##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546608_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 2387519 Sequences flagged as poor quality 0 Sequence length 50 %GC 42 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 30.937436728252216 31.0 31.0 33.0 30.0 34.0 2 31.307814094882595 31.0 31.0 34.0 30.0 34.0 3 31.463468981817527 31.0 31.0 34.0 30.0 34.0 4 35.23061093964069 37.0 35.0 37.0 33.0 37.0 5 35.00804977887087 35.0 35.0 37.0 32.0 37.0 6 35.088359506248956 37.0 35.0 37.0 32.0 37.0 7 35.68168462743124 37.0 35.0 37.0 35.0 37.0 8 35.72887461838 37.0 35.0 37.0 35.0 37.0 9 37.49409240303428 39.0 37.0 39.0 35.0 39.0 10 36.710447121049086 39.0 37.0 39.0 32.0 39.0 11 36.25917741387608 38.0 35.0 39.0 31.0 39.0 12 35.76528982596578 37.0 35.0 39.0 30.0 39.0 13 35.58100689460482 37.0 35.0 39.0 30.0 39.0 14 36.512789217593664 38.0 35.0 40.0 30.0 41.0 15 36.74135033061517 38.0 35.0 40.0 31.0 41.0 16 36.796363924224266 38.0 35.0 40.0 31.0 41.0 17 36.716829478634516 38.0 35.0 40.0 31.0 41.0 18 36.63803890147052 38.0 35.0 40.0 31.0 41.0 19 36.600741606663654 38.0 35.0 40.0 31.0 41.0 20 36.474245021715014 38.0 35.0 40.0 31.0 41.0 21 36.35033480361832 38.0 35.0 40.0 30.0 41.0 22 36.28900544875245 38.0 34.0 40.0 30.0 41.0 23 36.10877986730158 38.0 34.0 40.0 30.0 41.0 24 36.07353574987257 38.0 34.0 40.0 30.0 41.0 25 35.94188821115141 38.0 34.0 40.0 30.0 41.0 26 35.82182508285798 38.0 34.0 40.0 29.0 41.0 27 35.633281661842275 37.0 34.0 40.0 29.0 41.0 28 35.62777845956409 37.0 34.0 40.0 29.0 41.0 29 35.5548646942705 37.0 34.0 40.0 29.0 41.0 30 35.528022604218016 37.0 34.0 40.0 29.0 41.0 31 35.453587175641324 37.0 34.0 40.0 28.0 41.0 32 35.24231430200137 37.0 34.0 40.0 27.0 41.0 33 35.03498485247657 37.0 34.0 40.0 26.0 41.0 34 34.97645421879365 37.0 34.0 40.0 26.0 41.0 35 34.77637413566133 37.0 33.0 40.0 25.0 41.0 36 34.568245949037475 37.0 33.0 40.0 24.0 41.0 37 34.637171054973805 37.0 33.0 40.0 24.0 41.0 38 34.61486714870122 37.0 33.0 40.0 24.0 41.0 39 34.5433234248607 37.0 33.0 40.0 24.0 41.0 40 34.53317355799053 37.0 33.0 40.0 23.0 41.0 41 34.57373072214295 37.0 33.0 40.0 24.0 41.0 42 34.32460684082514 37.0 33.0 40.0 23.0 41.0 43 34.380538123466245 37.0 33.0 40.0 23.0 41.0 44 34.208331745213336 37.0 33.0 40.0 23.0 41.0 45 33.96716382152351 37.0 33.0 40.0 23.0 41.0 46 34.09117707544945 37.0 33.0 40.0 23.0 41.0 47 33.96208658444184 37.0 33.0 40.0 23.0 41.0 48 34.04028198309626 37.0 33.0 40.0 23.0 41.0 49 33.96478603939906 36.0 33.0 40.0 23.0 41.0 50 33.46116240331491 36.0 32.0 40.0 22.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 1.0 12 5.0 13 5.0 14 21.0 15 61.0 16 249.0 17 686.0 18 1470.0 19 2924.0 20 5012.0 21 7707.0 22 11751.0 23 16794.0 24 23328.0 25 31935.0 26 41120.0 27 48890.0 28 55555.0 29 63863.0 30 75958.0 31 91430.0 32 111279.0 33 137025.0 34 198230.0 35 260056.0 36 191434.0 37 231615.0 38 319830.0 39 459285.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 32.22416240457144 24.57668399706976 29.495513962401976 13.703639635956824 2 29.56298986521154 26.2340948909726 30.39037595093484 13.81253929288102 3 27.552911620808047 26.667264218630304 32.30181623685508 13.478007923706576 4 23.3465786031441 28.957968502030766 33.1869191407482 14.50853375407693 5 21.782653876262344 34.33660632648368 30.492867281893883 13.387872515360085 6 20.7269135868657 41.96272364743485 27.324976261969013 9.98538650373044 7 89.76975680612385 3.5803694127669767 5.5638510101909135 1.0860227709182628 8 90.6197186284172 2.735894457803268 5.092566802609738 1.5518201111697958 9 85.33071359850958 5.665420882514443 6.928824440768848 2.0750410782071262 10 39.77610230536385 39.67093036746514 11.443092180627673 9.109875146543336 11 29.841019066235702 25.124910000716227 30.83954515126372 14.194525781784353 12 29.90464159656949 24.617772675316928 29.627827045564874 15.849758682548703 13 20.604945971110595 34.70577616345671 30.169686607729613 14.51959125770308 14 17.04656591214562 36.785508303808264 29.68382659991397 16.48409918413215 15 15.41859981009575 27.403719090821895 41.49269597435664 15.684985124725708 16 17.73267563525149 24.654337829353402 40.659152869568786 16.953833665826323 17 18.137908012459796 24.573040047011144 31.146767837240247 26.14228410328881 18 19.656639381718012 26.20238833701428 35.15176214304472 18.989210138222983 19 24.087515115062956 27.207029556623425 29.639135856091613 19.066319472222002 20 26.217550520016804 26.295665081618196 29.568560501508053 17.918223896856947 21 21.635974415282142 30.195738756424557 30.706520031882466 17.461766796410835 22 21.847072211781352 26.980266963320503 28.48593037374781 22.686730451150336 23 17.619503761017192 31.5691309681724 29.33744192192816 21.47392334888225 24 17.443840237501774 27.573686324590508 38.01779169087241 16.96468174703531 25 17.05448207951434 28.938366563784413 35.12797175645513 18.87917960024611 26 17.444677927170424 33.875793239760604 30.141414581412757 18.538114251656218 27 17.285810081511393 34.10000087957415 30.653913120691396 17.960275918223058 28 16.218551559170837 30.813074157734448 35.20382455595118 17.76454972714353 29 16.25566121149193 27.100098470420548 36.229282363826215 20.414957954261308 30 17.932422736740524 31.614575632696535 32.45758463074011 17.995416999822826 31 23.154538246606624 29.84235936970554 28.829760098244243 18.173342285443592 32 24.454465074414067 28.29204709993931 29.373546346646872 17.879941478999747 33 23.663392835826645 29.45417397725421 28.710766280812845 18.171666906106296 34 18.93044620796735 29.763197696018334 29.18087772285791 22.1254783731564 35 18.54464823107167 28.376863178889884 31.78693028202079 21.291558308017652 36 24.460580208995193 28.224864388513765 28.503396203339115 18.811159199151923 37 18.93325246835732 32.43777327007659 30.197958634046472 18.431015627519614 38 19.106821767701117 32.99349659625746 27.707716671574133 20.1919649644673 39 19.390631027438943 32.61762524193525 28.494977422169203 19.496766308456603 40 22.52581026580312 28.624316707008408 28.30959669849748 20.540276328690997 41 18.291163337338887 27.941557742577128 29.42983909238 24.33743982770399 42 19.563530175047823 28.325052072884027 27.843212975477893 24.26820477659026 43 19.455719514692866 28.236340736974242 29.04387357755059 23.264066170782304 44 18.712772547569255 30.55100294489803 30.29864893221792 20.437575575314792 45 17.359024158551197 34.63197570364885 27.43953032415658 20.56946981364337 46 20.309660362912297 32.94352840752262 27.87931740019661 18.867493829368478 47 19.30271549671437 29.71017193999294 29.072313141801175 21.914799421491516 48 20.53893602522116 27.665036382956533 31.933651627484434 19.862375964337875 49 20.4124867697388 27.194003482275953 32.148895987843446 20.244613760141807 50 19.02359729912097 32.05494909150461 29.56625685491927 19.355196754455147 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 2495.0 1 2698.0 2 2901.0 3 9515.5 4 16130.0 5 12950.0 6 9770.0 7 10449.5 8 11129.0 9 12033.5 10 12938.0 11 13414.0 12 13890.0 13 13946.5 14 14003.0 15 14065.5 16 14128.0 17 13806.5 18 13485.0 19 14055.5 20 14626.0 21 16078.5 22 17531.0 23 20194.0 24 22857.0 25 26962.5 26 31068.0 27 33755.5 28 36443.0 29 45362.5 30 54282.0 31 63779.0 32 73276.0 33 83426.5 34 93577.0 35 104392.0 36 115207.0 37 125022.5 38 134838.0 39 148535.5 40 162233.0 41 181765.5 42 201298.0 43 221857.5 44 242417.0 45 235553.5 46 228690.0 47 217142.5 48 205595.0 49 192407.5 50 179220.0 51 155125.0 52 131030.0 53 111661.5 54 92293.0 55 80231.5 56 68170.0 57 60119.5 58 52069.0 59 46326.0 60 40583.0 61 35318.5 62 30054.0 63 25059.5 64 20065.0 65 15500.0 66 10935.0 67 9050.0 68 7165.0 69 5645.0 70 4125.0 71 3668.0 72 3211.0 73 2321.0 74 1431.0 75 1234.0 76 1037.0 77 891.5 78 746.0 79 536.5 80 327.0 81 233.5 82 140.0 83 103.5 84 67.0 85 44.5 86 22.0 87 16.0 88 10.0 89 7.5 90 5.0 91 6.0 92 7.0 93 3.5 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 2387519.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 21.767836111285973 #Duplication Level Percentage of deduplicated Percentage of total 1 80.25357075482006 17.469465755364162 2 6.703090713057221 2.9182356016182522 3 2.38630616904205 1.558341647971741 4 1.2842543303401115 1.1182175115221147 5 0.896865260431436 0.9761408001488656 6 0.6354317450696632 0.8299184451950927 7 0.5216989173211174 0.7949379572176989 8 0.40850955799983285 0.7113895286747387 9 0.37174337372016697 0.7282843951137415 >10 4.336361069910917 22.008914120730722 >50 1.3334380717216885 20.75256343069758 >100 0.8642470258522543 29.06452106896128 >500 0.003898270185678266 0.5193666963517235 >1k 3.898270185678266E-4 0.20611742593551774 >5k 1.949135092839133E-4 0.3435856144968758 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 8098 0.3391805468354388 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATA 2966 0.12422937786044845 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.036565154036470496 0.0 2 0.0 0.0 0.0 0.13449107630138232 0.0 3 0.0 0.0 0.0 0.19350631345761019 0.0 4 0.0 0.0 0.0 0.3195367241056511 0.0 5 0.0 0.0 0.0 0.5189906342106597 0.0 6 0.0 0.0 0.0 0.9000137799950493 0.0 7 0.0 0.0 0.0 1.0944834365716043 0.0 8 0.0 0.0 0.0 1.6404476781127186 0.0 9 0.0 0.0 0.0 1.908508372079971 0.0 10 0.0 0.0 0.0 2.310138683713093 0.0 11 0.0 0.0 0.0 2.611162466141631 0.0 12 0.0 0.0 0.0 2.8857152550409024 0.0 13 0.0 0.0 0.0 3.037420854032994 0.0 14 0.0 0.0 0.0 3.115786722534983 0.0 15 0.0 0.0 0.0 3.183346394311417 0.0 16 0.0 0.0 0.0 3.303722399696086 0.0 17 0.0 0.0 0.0 3.449564171007644 0.0 18 0.0 0.0 0.0 3.6486411207617615 0.0 19 0.0 0.0 0.0 3.744472818855054 0.0 20 0.0 0.0 0.0 3.8468384963637985 0.0 21 0.0 0.0 0.0 3.9668794258810087 0.0 22 0.0 0.0 0.0 4.10995682128603 0.0 23 0.0 0.0 0.0 4.270500046282354 0.0 24 0.0 0.0 0.0 4.397074955215016 0.0 25 0.0 0.0 0.0 4.504718077636241 0.0 26 0.0 0.0 0.0 4.611649163839115 0.0 27 0.0 0.0 0.0 4.720129975928987 0.0 28 0.0 0.0 0.0 4.831417048408829 0.0 29 0.0 0.0 0.0 4.959206607361031 0.0 30 0.0 0.0 0.0 5.121132020310624 0.0 31 0.0 0.0 0.0 5.268774824409775 0.0 32 0.0 0.0 0.0 5.409632342192879 0.0 33 0.0 0.0 0.0 5.550154784108525 0.0 34 0.0 0.0 0.0 5.689755767388657 0.0 35 0.0 0.0 0.0 5.854990054529409 0.0 36 0.0 0.0 0.0 6.009711336328633 0.0 37 0.0 0.0 0.0 6.170966597543307 0.0 38 0.0 0.0 0.0 6.331174746672173 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGACGGT 160 0.0 44.000004 28 CGTTCGA 40 8.3182385E-9 44.000004 14 CTAGTCG 40 8.3182385E-9 44.000004 1 CTACGCG 40 8.3182385E-9 44.000004 1 CGCGCGA 25 4.4442855E-5 44.0 16 TACGTCG 25 4.4442855E-5 44.0 1 CGGTCTA 160 0.0 42.625004 31 CGTTTTT 8100 0.0 41.990124 1 TCACGAC 175 0.0 41.485714 25 GTTAGCG 150 0.0 41.066666 1 GCTAGCG 200 0.0 40.7 1 CGTTTGG 140 0.0 39.285713 2 GGCGATA 975 0.0 39.26154 8 CACGACG 180 0.0 39.111107 26 GACGGTC 180 0.0 39.111107 29 GCGTAAG 300 0.0 38.866665 1 AAGCGAC 40 4.1270323E-7 38.500004 15 CGCACGA 40 4.1270323E-7 38.500004 39 TCGACAG 80 0.0 38.500004 1 CGTAAGG 490 0.0 38.163265 2 >>END_MODULE