##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546607_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 2414063 Sequences flagged as poor quality 0 Sequence length 50 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 30.99194304373995 31.0 31.0 33.0 30.0 34.0 2 31.378853410205117 31.0 31.0 34.0 30.0 34.0 3 31.52763494573257 31.0 31.0 34.0 30.0 34.0 4 35.289378529060755 37.0 35.0 37.0 33.0 37.0 5 35.076539841752265 37.0 35.0 37.0 32.0 37.0 6 35.1464029729133 37.0 35.0 37.0 32.0 37.0 7 35.69984751847819 37.0 35.0 37.0 35.0 37.0 8 35.74869752777786 37.0 35.0 37.0 35.0 37.0 9 37.523620965981415 39.0 37.0 39.0 35.0 39.0 10 36.7539906787851 39.0 37.0 39.0 32.0 39.0 11 36.29742015846314 38.0 35.0 39.0 31.0 39.0 12 35.658699876515236 37.0 35.0 39.0 30.0 39.0 13 35.39102210671387 37.0 35.0 39.0 30.0 39.0 14 36.33111687640298 38.0 35.0 40.0 30.0 41.0 15 36.59142946973629 38.0 35.0 40.0 31.0 41.0 16 36.68602600677779 38.0 35.0 40.0 31.0 41.0 17 36.60179208247672 38.0 35.0 40.0 31.0 41.0 18 36.54567548568534 38.0 35.0 40.0 31.0 41.0 19 36.49501607870217 38.0 35.0 40.0 31.0 41.0 20 36.3528375191534 38.0 35.0 40.0 31.0 41.0 21 36.218930077632606 38.0 34.0 40.0 30.0 41.0 22 36.128598963655875 38.0 34.0 40.0 30.0 41.0 23 35.96409580031673 37.0 34.0 40.0 30.0 41.0 24 35.93521337264189 37.0 34.0 40.0 30.0 41.0 25 35.8082858649505 37.0 34.0 40.0 30.0 41.0 26 35.67778719942272 37.0 34.0 40.0 29.0 41.0 27 35.483838657069015 37.0 34.0 40.0 29.0 41.0 28 35.46708888707544 37.0 34.0 40.0 29.0 41.0 29 35.39451538754374 37.0 34.0 40.0 29.0 41.0 30 35.37991262034172 37.0 34.0 40.0 29.0 41.0 31 35.28140814883456 37.0 34.0 40.0 28.0 41.0 32 35.063857902631376 37.0 34.0 40.0 27.0 41.0 33 34.84364989646086 37.0 33.0 40.0 25.0 41.0 34 34.7660964109056 37.0 34.0 40.0 25.0 41.0 35 34.516114119639795 37.0 33.0 40.0 24.0 41.0 36 34.29544589349988 37.0 33.0 40.0 23.0 41.0 37 34.34137592929431 37.0 33.0 40.0 23.0 41.0 38 34.318069578134455 37.0 33.0 40.0 23.0 41.0 39 34.256022315904765 37.0 33.0 40.0 23.0 41.0 40 34.22389100864393 37.0 33.0 40.0 23.0 41.0 41 34.26729791227486 37.0 33.0 40.0 23.0 41.0 42 34.027728770955854 36.0 33.0 40.0 23.0 41.0 43 34.09052373529605 36.0 33.0 40.0 23.0 41.0 44 33.88909941455546 36.0 33.0 40.0 23.0 41.0 45 33.715036848665505 36.0 33.0 40.0 23.0 41.0 46 33.80020985367822 36.0 33.0 40.0 23.0 41.0 47 33.6606505298329 36.0 33.0 40.0 22.0 41.0 48 33.73500608724793 36.0 33.0 40.0 23.0 41.0 49 33.67302510332166 36.0 32.0 40.0 23.0 41.0 50 33.15741842694246 35.0 32.0 39.0 20.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 1.0 11 0.0 12 1.0 13 9.0 14 28.0 15 67.0 16 250.0 17 667.0 18 1610.0 19 3203.0 20 5444.0 21 8528.0 22 12435.0 23 17730.0 24 25040.0 25 34260.0 26 43480.0 27 51334.0 28 58571.0 29 66655.0 30 78126.0 31 93813.0 32 113585.0 33 142879.0 34 214522.0 35 286504.0 36 186970.0 37 224423.0 38 308815.0 39 435113.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 29.367957671361516 24.905398077846353 30.936143754326213 14.790500496465917 2 29.03789172030722 26.82050965529897 30.355048729051397 13.786549895342418 3 27.274433185877918 26.62598283474789 32.143568746963105 13.956015232411085 4 23.822534871707987 29.753366005775327 31.502077617692663 14.922021504824027 5 22.062887339725602 33.45674905750181 30.847662219254428 13.632701383518159 6 20.41305467172978 41.79907483773207 27.25222995423069 10.535640536307461 7 89.59484487355964 3.75470731294088 5.697034418737208 0.9534133947622743 8 90.55877994899056 2.8763126728672783 5.146013173641284 1.4188942045008768 9 85.40294930165452 5.427116028040693 6.915105363861672 2.254829306443121 10 43.69355729324379 35.07373254136284 11.563948413939487 9.668761751453877 11 34.30457283012084 24.112999536466116 28.291018088591724 13.291409544821326 12 33.75114899652578 23.083034701248476 27.770609134890016 15.39520716733573 13 21.038680432117967 35.70925862332508 28.95612086345717 14.29594008109979 14 17.346398996215097 37.90041933454098 28.746805696454487 16.006375972789442 15 15.44118774033652 25.66482316327287 43.77089578855233 15.123093307838278 16 17.765443569616863 22.83660368432804 41.61511112178928 17.782841624265814 17 17.843154880382162 22.677452908229817 30.647046079576217 28.832346131811804 18 20.11455376268142 25.519880798471288 34.944282729986746 19.42128270886054 19 25.76863155601159 25.831678792144196 28.670834191154082 19.72885546069013 20 27.65797744300791 25.617102784807187 28.369475030270543 18.355444741914358 21 21.754693228801404 29.6983135899933 29.941927779018197 18.6050654021871 22 22.29444716231515 25.814322161434895 27.635981331058883 24.255249345191075 23 18.513767039219772 31.308503547753308 27.719284873675626 22.458444539351294 24 17.960923140779673 25.876085255438653 38.92479193790717 17.238199665874504 25 17.60202612773569 27.25330697666134 35.60702434029269 19.53764255531028 26 18.029231217246608 33.440386601343874 29.00483541647422 19.5255467649353 27 17.502732944417772 34.74080833847336 29.56923659407397 18.1872221230349 28 16.26096750581903 30.542574903803256 35.9780585676513 17.218399022726416 29 16.865964144266325 25.916266476889792 36.071096736083526 21.146672642760358 30 18.60610100067811 31.615289244729738 31.69784715643295 18.080762598159204 31 25.17096695488063 28.34884590832965 28.468105430554214 18.012081706235506 32 26.681076674469555 27.187028673236778 28.855543538010398 17.276351114283266 33 25.94708588798221 28.095455669549636 27.31494579884618 18.642512643621977 34 20.126898096694244 27.909089365107704 29.442562186653788 22.521450351544264 35 20.096410077118946 26.94859247666693 32.60362302060882 20.351374425605297 36 27.094114776623478 26.827303181399987 27.757104930567262 18.32147711140927 37 20.467320032658634 32.47404893741381 29.876519378326083 17.18211165160147 38 20.4206766766236 32.630465733495775 26.916944586781703 20.031913003098925 39 20.498470835268176 31.886988864830784 28.53981027007166 19.07473002982938 40 23.62212585172798 27.45723703151078 27.720817559442317 21.19981955731893 41 18.274626635676036 26.000812737695746 29.844581520863372 25.879979105764843 42 20.604184729230347 26.85468440550226 27.93796185103703 24.603169014230367 43 21.1134506431688 26.82353360289272 28.54921350437002 23.513802249568467 44 19.6444334717031 29.712439153410664 30.361842255152418 20.281285119733827 45 18.087100460924177 34.89411833908228 26.398358286424173 20.620422913569364 46 21.091703074857616 32.67930455833174 27.59865836144293 18.630334005367715 47 20.488363393995932 28.35746208777484 28.855129298613996 22.29904521961523 48 21.159886879505628 26.5229200729227 32.38614733749699 19.931045710074674 49 21.109639640721888 26.3920204236592 32.16784317559235 20.330496760026563 50 19.978766088540358 31.88752737604611 28.76407947928451 19.369627056129023 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 2579.0 1 3081.0 2 3583.0 3 10079.0 4 16575.0 5 13440.0 6 10305.0 7 11104.0 8 11903.0 9 12774.0 10 13645.0 11 14138.5 12 14632.0 13 14644.0 14 14656.0 15 14079.5 16 13503.0 17 13575.0 18 13647.0 19 14754.0 20 15861.0 21 15907.0 22 15953.0 23 17431.0 24 18909.0 25 22283.5 26 25658.0 27 31053.5 28 36449.0 29 43537.0 30 50625.0 31 57413.0 32 64201.0 33 74366.0 34 84531.0 35 94706.0 36 104881.0 37 110280.5 38 115680.0 39 129947.0 40 144214.0 41 169752.5 42 195291.0 43 215504.5 44 235718.0 45 235036.0 46 234354.0 47 218428.0 48 202502.0 49 188310.5 50 174119.0 51 153115.0 52 132111.0 53 118505.0 54 104899.0 55 91953.5 56 79008.0 57 73558.0 58 68108.0 59 63351.5 60 58595.0 61 52370.5 62 46146.0 63 38936.5 64 31727.0 65 26446.5 66 21166.0 67 17229.5 68 13293.0 69 11160.0 70 9027.0 71 7824.5 72 6622.0 73 5282.0 74 3942.0 75 3082.0 76 2222.0 77 1924.0 78 1626.0 79 1250.5 80 875.0 81 667.0 82 459.0 83 298.0 84 137.0 85 94.0 86 51.0 87 46.0 88 41.0 89 36.5 90 32.0 91 17.0 92 2.0 93 1.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 2414063.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 20.327403577123977 #Duplication Level Percentage of deduplicated Percentage of total 1 80.93334738896712 16.451648152231076 2 6.495513407312033 2.640738449421027 3 2.1877813718003902 1.3341574464930137 4 1.1949167329431716 0.9715821868637725 5 0.8002549309968642 0.8133552473478377 6 0.601067639348754 0.7330886689314795 7 0.4728818878092255 0.6728722684467272 8 0.39908407639729926 0.6489874465705343 9 0.33817911697221825 0.6186873052844727 >10 4.103068494723807 19.776053939077315 >50 1.4622089929707025 21.452464041763474 >100 1.0061201715491872 32.67865035862742 >500 0.004543234837148387 0.552391899895234 >1k 8.26042697663343E-4 0.3257093055161578 >5k 2.0651067441583576E-4 0.3296132835304641 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 7852 0.3252607740560209 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATA 3667 0.15190158666116005 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.021167633156218377 0.0 2 0.0 0.0 0.0 0.09999739029180266 0.0 3 0.0 0.0 0.0 0.16026922246851055 0.0 4 0.0 0.0 0.0 0.2792387771155931 0.0 5 0.0 0.0 0.0 0.4586458596979449 0.0 6 0.0 0.0 0.0 0.7927299328973602 0.0 7 0.0 0.0 0.0 0.9688645242481244 0.0 8 0.0 0.0 0.0 1.420344042388289 0.0 9 0.0 0.0 0.0 1.671207420850243 0.0 10 0.0 0.0 0.0 2.0653976304678046 0.0 11 0.0 0.0 0.0 2.380385267493019 0.0 12 0.0 0.0 0.0 2.643551556028157 0.0 13 0.0 0.0 0.0 2.780167708962028 0.0 14 0.0 0.0 0.0 2.8425521620603935 0.0 15 0.0 0.0 0.0 2.897563153902777 0.0 16 0.0 0.0 0.0 3.004809733631641 0.0 17 0.0 0.0 0.0 3.1241106797958462 0.0 18 2.0711969820174535E-4 0.0 0.0 3.293161777468111 0.0 19 2.0711969820174535E-4 0.0 0.0 3.3708730882334055 0.0 20 2.0711969820174535E-4 0.0 0.0 3.453596695695183 0.0 21 2.0711969820174535E-4 0.0 0.0 3.556866577218573 0.0 22 2.0711969820174535E-4 0.0 0.0 3.667799887575428 0.0 23 2.0711969820174535E-4 0.0 0.0 3.7914089234622295 0.0 24 2.0711969820174535E-4 0.0 0.0 3.885358418566541 0.0 25 2.0711969820174535E-4 0.0 0.0 3.9652651981327747 0.0 26 2.0711969820174535E-4 0.0 0.0 4.046456119827859 0.0 27 2.0711969820174535E-4 0.0 0.0 4.13439914368432 0.0 28 2.485436378420944E-4 0.0 0.0 4.218903980550632 0.0 29 2.485436378420944E-4 0.0 0.0 4.318155739928908 0.0 30 2.485436378420944E-4 0.0 0.0 4.456843089844797 0.0 31 2.485436378420944E-4 0.0 0.0 4.566616529891722 0.0 32 2.485436378420944E-4 0.0 0.0 4.6707977380872 0.0 33 2.485436378420944E-4 0.0 0.0 4.77402619567095 0.0 34 2.485436378420944E-4 0.0 0.0 4.8762604787033315 0.0 35 2.485436378420944E-4 0.0 0.0 5.004384724010931 0.0 36 2.485436378420944E-4 0.0 0.0 5.120330331064268 0.0 37 2.485436378420944E-4 0.0 0.0 5.241785322089772 0.0 38 2.485436378420944E-4 0.0 0.0 5.363033193417073 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CCAACGA 30 2.5288791E-6 44.000004 18 ATCGGAT 30 2.5288791E-6 44.000004 10 TCGTTGC 20 7.8582065E-4 44.0 16 TCGACTA 20 7.8582065E-4 44.0 44 CTTACCG 25 4.444301E-5 44.0 44 CGTTTTT 8410 0.0 41.69798 1 GCGTAAG 160 0.0 41.25 1 TCGTTAG 135 0.0 40.74074 1 GTTTACG 200 0.0 40.699997 1 TACGGGA 1010 0.0 38.9901 4 GCACGAG 165 0.0 38.666668 1 CGCTATA 40 4.1270505E-7 38.5 16 CCGACCA 40 4.1270505E-7 38.5 36 CGCGTAA 40 4.1270505E-7 38.5 31 TTCGAAT 40 4.1270505E-7 38.5 16 GCGTAAC 40 4.1270505E-7 38.5 32 GGCGATA 805 0.0 38.26087 8 AGGGCGA 2265 0.0 37.686535 6 AGGGACC 2390 0.0 37.648533 6 GCGGGAT 1695 0.0 37.640118 5 >>END_MODULE