##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546606_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1502997 Sequences flagged as poor quality 0 Sequence length 50 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 30.960224804174594 31.0 31.0 33.0 30.0 34.0 2 31.3297764400062 31.0 31.0 34.0 30.0 34.0 3 31.47194505378254 31.0 31.0 34.0 30.0 34.0 4 35.23131716164437 37.0 35.0 37.0 33.0 37.0 5 35.012896898663136 37.0 35.0 37.0 32.0 37.0 6 35.068654162317024 37.0 35.0 37.0 32.0 37.0 7 35.613207478125375 37.0 35.0 37.0 35.0 37.0 8 35.656358595526136 37.0 35.0 37.0 35.0 37.0 9 37.41241599284629 39.0 37.0 39.0 35.0 39.0 10 36.725060662130396 39.0 37.0 39.0 32.0 39.0 11 36.271165544575275 38.0 35.0 39.0 32.0 39.0 12 35.10737879050989 37.0 34.0 39.0 30.0 39.0 13 34.57617613341876 35.0 33.0 39.0 27.0 39.0 14 35.41368944848193 37.0 33.0 40.0 27.0 41.0 15 35.87428052085267 37.0 34.0 40.0 30.0 41.0 16 36.087440626960664 37.0 34.0 40.0 31.0 41.0 17 36.02908788241094 37.0 34.0 40.0 31.0 41.0 18 35.969700538324425 36.0 34.0 40.0 30.0 41.0 19 35.865207981120385 36.0 34.0 40.0 30.0 41.0 20 35.658919478881195 36.0 34.0 40.0 30.0 41.0 21 35.482253790260394 35.0 34.0 40.0 30.0 41.0 22 35.35881508745526 35.0 34.0 40.0 29.0 41.0 23 35.247446934358486 35.0 34.0 40.0 29.0 41.0 24 35.1799431402724 35.0 34.0 40.0 29.0 41.0 25 35.04751107287639 35.0 34.0 40.0 29.0 41.0 26 34.88377288843557 35.0 34.0 39.0 29.0 41.0 27 34.697113167890556 35.0 33.0 39.0 27.0 41.0 28 34.730455882480136 35.0 33.0 39.0 27.0 41.0 29 34.682449133298334 35.0 34.0 39.0 27.0 41.0 30 34.62862600524153 35.0 33.0 39.0 27.0 41.0 31 34.410330825676965 35.0 33.0 39.0 26.0 41.0 32 34.117992916818864 35.0 33.0 39.0 25.0 41.0 33 33.82130436720765 35.0 33.0 39.0 23.0 41.0 34 33.72704336735203 35.0 33.0 39.0 23.0 41.0 35 33.40929023810427 35.0 32.0 39.0 23.0 41.0 36 33.05750577013793 35.0 32.0 39.0 21.0 41.0 37 33.071396682761176 35.0 32.0 39.0 21.0 41.0 38 33.06710658770443 35.0 32.0 39.0 21.0 41.0 39 32.994315357914886 35.0 32.0 39.0 21.0 41.0 40 32.86476553180079 35.0 31.0 39.0 19.0 41.0 41 32.909739008128426 35.0 32.0 39.0 19.0 41.0 42 32.68358486410818 35.0 32.0 39.0 18.0 41.0 43 32.712703352035966 35.0 32.0 39.0 18.0 41.0 44 32.54546416260312 35.0 31.0 39.0 18.0 41.0 45 32.33020824392863 35.0 31.0 38.0 18.0 41.0 46 32.40888637834939 35.0 31.0 38.0 18.0 41.0 47 32.26175967084432 35.0 31.0 38.0 18.0 40.0 48 32.31792145959041 35.0 31.0 38.0 18.0 40.0 49 32.288824927794266 35.0 31.0 38.0 18.0 40.0 50 31.73216646473679 35.0 30.0 38.0 17.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 1.0 12 2.0 13 6.0 14 13.0 15 65.0 16 208.0 17 611.0 18 1322.0 19 2635.0 20 4473.0 21 7196.0 22 10508.0 23 15043.0 24 20926.0 25 27967.0 26 33912.0 27 38678.0 28 43427.0 29 48598.0 30 56383.0 31 65928.0 32 80135.0 33 101844.0 34 165528.0 35 231171.0 36 99399.0 37 113434.0 38 146120.0 39 187464.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 30.400726016086526 25.35733604258691 30.268257355137766 13.973680586188793 2 28.70750906355768 28.698127807307667 29.692607503541257 12.901755625593397 3 27.768585033769195 26.405708061958872 32.272386438562414 13.553320465709511 4 23.608629957345222 30.07544259902049 31.75329025939506 14.562637184239225 5 22.91155604435671 33.66147770088696 30.068922293258073 13.35804396149826 6 20.942091035444516 41.661427135250435 27.35554362383957 10.04093820546548 7 86.58067847108146 5.345253516806753 6.730885025053277 1.3431829870585237 8 86.6910579329167 4.5065958215485455 6.005467742117915 2.7968785034168397 9 82.02058952878815 6.472468008918182 8.633550166766799 2.8733922955268705 10 54.16091981554189 23.042095227069648 12.081527774173868 10.715457183214603 11 48.312937417706095 20.39797817294379 20.091324200913242 11.197760208436877 12 43.39117110679529 21.671101139922435 21.863383626181555 13.074344127100721 13 19.84215537356362 43.91459197856017 23.79372680051923 12.44952584735698 14 13.791444693502383 46.15152259119613 26.56691929524809 13.490113420053401 15 12.015060575636545 23.377026035314774 51.10030159740838 13.507611791640302 16 13.215062970850907 18.81846736886368 49.91666650033233 18.049803159953083 17 14.037286834238524 19.56337903535403 29.039512387582946 37.35982174282451 18 18.285864842045594 23.54861653083805 37.794952351867636 20.37056627524872 19 29.435321560854742 24.094791939039133 25.87916010477732 20.590726395328797 20 30.507446122646954 23.46924178824043 26.12899426944964 19.89431781966298 21 20.32858349018661 32.92455008226896 27.65521155398181 19.09165487356262 22 22.22965182232566 25.610763028801784 23.071503136732808 29.088082012139743 23 17.127712164428804 34.03493154011618 23.56884278544801 25.268513510007008 24 16.775748720722664 24.07915651195578 42.4634247440281 16.68167002329346 25 15.15059577630561 25.230389681416533 39.109259699121154 20.509754843156706 26 14.556383013405883 37.34019429180498 27.639842261827535 20.46358043296161 27 16.102959620012548 38.755300243446925 26.87749875748255 18.264241379057975 28 14.216661776437345 30.782829240510797 39.2367383301497 15.763770652902167 29 14.68213176739541 25.0341817049535 38.26514623781684 22.018540289834245 30 17.966037191025663 33.982769094016824 29.56260059068648 18.48859312427104 31 29.276106339533612 27.435849838688963 24.82792713491777 18.460116686859653 32 31.872319106425362 25.07110792636313 27.140306999947438 15.916265967264073 33 30.503720233639854 27.212096897066328 23.82772553770899 18.456457331584826 34 20.974958699185695 26.509301083102628 26.040105203137465 26.475635014574213 35 19.85639359226931 24.79146664963403 33.04870202668402 22.303437731412636 36 33.31576842801416 23.481350927513496 25.67210712995435 17.530773514517996 37 20.033439853838697 33.93692735248307 29.156079486519264 16.873553307158964 38 20.682609479593104 34.218498107447985 24.31115963637985 20.787732776579062 39 20.868704328751157 33.80745270948645 26.864990415815864 18.458852545946534 40 27.15654123062122 24.34662211567954 25.51116203159421 22.985674622105034 41 16.76789774031485 22.578887383008748 29.101056089932314 31.552158786744084 42 20.3625156936441 24.39845189311755 25.73371736603599 29.50531504720236 43 20.650007950781006 24.229988483010946 27.81329570185436 27.306707864353687 44 19.01327813694904 28.44676336679315 30.454751406689436 22.085207089568375 45 16.443811930429668 37.94997594805579 24.043960167585166 21.562251953929383 46 21.8151466702861 33.460346228235984 25.926066386027387 18.79844071545053 47 21.380814466030206 26.062460537180048 27.02107855172033 25.535646445069414 48 21.693988743823176 23.598716431237055 33.713706680718595 20.993588144221178 49 22.450876482122055 22.087602303930083 34.195943172208594 21.26557804173927 50 19.859254542756904 33.01230807513255 26.548822120070763 20.579615262039777 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 3212.0 1 3334.0 2 3456.0 3 7063.5 4 10671.0 5 8733.5 6 6796.0 7 7713.0 8 8630.0 9 9766.5 10 10903.0 11 11412.5 12 11922.0 13 12092.0 14 12262.0 15 11911.5 16 11561.0 17 11194.5 18 10828.0 19 10714.5 20 10601.0 21 10304.5 22 10008.0 23 9685.5 24 9363.0 25 9278.5 26 9194.0 27 11147.0 28 13100.0 29 15627.0 30 18154.0 31 21226.0 32 24298.0 33 26171.5 34 28045.0 35 32386.0 36 36727.0 37 40216.5 38 43706.0 39 54409.0 40 65112.0 41 94606.5 42 124101.0 43 148258.0 44 172415.0 45 173739.0 46 175063.0 47 164024.0 48 152985.0 49 135489.5 50 117994.0 51 103945.5 52 89897.0 53 76534.0 54 63171.0 55 56593.0 56 50015.0 57 46009.5 58 42004.0 59 39785.5 60 37567.0 61 36207.5 62 34848.0 63 31411.5 64 27975.0 65 23142.0 66 18309.0 67 16006.0 68 13703.0 69 11264.5 70 8826.0 71 7260.5 72 5695.0 73 5104.0 74 4513.0 75 3497.0 76 2481.0 77 1901.0 78 1321.0 79 1105.0 80 889.0 81 636.0 82 383.0 83 296.0 84 209.0 85 127.0 86 45.0 87 34.0 88 23.0 89 17.0 90 11.0 91 7.5 92 4.0 93 2.5 94 1.0 95 0.5 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 1502997.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 22.50388051692653 #Duplication Level Percentage of deduplicated Percentage of total 1 83.57442873607064 18.807489585469252 2 6.451580960563391 2.9037121416359333 3 2.0861583864020767 1.4083997720092973 4 1.054476538035194 0.9491925607938536 5 0.6634078222013845 0.7464625182407199 6 0.4934517365967862 0.6662747352746387 7 0.3829368553771275 0.6032295667254116 8 0.28155316524182966 0.5068831031811686 9 0.23951479144148452 0.48510110237721715 >10 2.721935881204195 14.413990300456131 >50 1.0681406940688638 17.580105564250463 >100 0.9689730677998736 38.258168072453294 >500 0.011947879997528867 1.6926269326347851 >1k 0.0011947879997528865 0.6160567823993409 >5k 2.986969999382216E-4 0.36230726209846675 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 5390 0.358616816933101 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATA 4028 0.2679978735819167 No Hit AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 2411 0.16041282850198638 No Hit GAGCGAGGGATATTCTCCATTCATTTCTTTTTCATAAGTATTTCTTGCTC 1559 0.10372608860829396 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.04344652717204359 0.0 2 0.0 0.0 0.0 0.203526687012682 0.0 3 0.0 0.0 0.0 0.3103133273053772 0.0 4 0.0 0.0 0.0 0.5975394495132059 0.0 5 0.0 0.0 0.0 0.9662028600190153 0.0 6 0.0 0.0 0.0 1.746909674470408 0.0 7 0.0 0.0 0.0 2.104395417954926 0.0 8 0.0 0.0 0.0 3.08390502442786 0.0 9 0.0 0.0 0.0 3.6085900371058623 0.0 10 0.0 0.0 0.0 4.426622275360496 0.0 11 0.0 0.0 0.0 5.011719916939288 0.0 12 0.0 0.0 0.0 5.506930486221862 0.0 13 0.0 0.0 0.0 5.747849130770055 0.0 14 0.0 0.0 0.0 5.844456110025503 0.0 15 0.0 0.0 0.0 5.9323471703536335 0.0 16 0.0 0.0 0.0 6.119240424298917 0.0 17 0.0 0.0 0.0 6.28344567554027 0.0 18 0.0 0.0 0.0 6.556034376648789 0.0 19 0.0 0.0 0.0 6.66508316383865 0.0 20 0.0 0.0 0.0 6.795023542961164 0.0 21 0.0 0.0 0.0 6.940399747970222 0.0 22 0.0 0.0 0.0 7.079521782145939 0.0 23 0.0 0.0 0.0 7.242529426206439 0.0 24 0.0 0.0 0.0 7.361425205772201 0.0 25 0.0 0.0 0.0 7.462290343892902 0.0 26 0.0 0.0 0.0 7.5655506963753085 0.0 27 0.0 0.0 0.0 7.670807060825803 0.0 28 0.0 0.0 0.0 7.76588376423905 0.0 29 0.0 0.0 0.0 7.866283166233865 0.0 30 0.0 0.0 0.0 8.026097191145425 0.0 31 0.0 0.0 0.0 8.149716865702327 0.0 32 0.0 0.0 0.0 8.259231389018074 0.0 33 0.0 0.0 0.0 8.357634779044801 0.0 34 0.0 0.0 0.0 8.466883167431472 0.0 35 0.0 0.0 0.0 8.613856182015 0.0 36 0.0 0.0 0.0 8.725300183566567 0.0 37 0.0 0.0 0.0 8.845327036580912 0.0 38 0.0 0.0 0.0 8.958767050100565 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CATACCG 65 0.0 44.000004 33 ACGCCTA 20 7.857257E-4 44.0 21 AATCACG 25 4.4434957E-5 44.0 44 CAACGCG 25 4.4434957E-5 44.0 1 GACAACG 30 2.5282388E-6 44.0 1 ACCGAAT 30 2.5282388E-6 44.0 36 ATGCTCG 20 7.857257E-4 44.0 12 GTTAGGT 25 4.4434957E-5 44.0 27 TATGCGA 25 4.4434957E-5 44.0 43 CGTTCGA 30 2.5282388E-6 44.0 14 TATGATC 20 7.857257E-4 44.0 15 ATCCGTC 20 7.857257E-4 44.0 34 ATCCGAT 20 7.857257E-4 44.0 31 CTAACGG 50 2.7284841E-11 44.0 2 TACGCAA 20 7.857257E-4 44.0 15 TATCTAG 20 7.857257E-4 44.0 1 TATTCGA 40 8.314601E-9 44.0 11 CGTACTA 25 4.4434957E-5 44.0 24 GCCTACT 25 4.4434957E-5 44.0 36 ACCGTTC 35 1.4464786E-7 44.0 33 >>END_MODULE