SRR1546604_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1546604_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	2616738
Sequences flagged as poor quality	0
Sequence length	51
%GC	42

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	64135	2.450952292510752	No Hit
CGTTCTGTCTCTTATACACATCTGACGCTCTAGTTGTCGTATGCCGTCTTC	3534	0.1350536431236142	No Hit
CGCTGTCTCTTATACACATCTGACGCTCTAGTTGTCGTATGCCGTCTTCTG	3004	0.11479941820694314	No Hit
CGTTTCTGTCTCTTATACACATCTGACGCTCTAGTTGTCGTATGCCGTCTT	2825	0.10795884035772782	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGTTTTT	42510	43.61856	1
TAACGGG	510	39.705883	3
GTTTTTT	47385	38.404556	2
TATACGG	170	38.38235	2
CGTAAGG	350	37.92857	2
ACGGGAT	625	37.8	5
AGGGCGA	2500	37.71	6
ATAACGC	175	37.285713	11
GGCGATA	970	36.649487	8
TAGCACG	80	36.5625	1
GCGATAA	185	36.48649	9
CGTTCGG	735	36.42857	45
TAGGGAT	2070	36.413044	5
GGGCGAT	5145	36.078716	7
GCCAGTA	1750	35.742855	25
GGTACCT	1870	35.735294	8
AACGGGA	675	35.666668	4
TAGGGCG	1150	35.608696	5
GTAACGG	215	35.581398	2
ACGGGAC	545	35.504585	5