SRR1546603_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1546603_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1178200
Sequences flagged as poor quality	0
Sequence length	51
%GC	44

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	7612	0.6460702766932609	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	3640	0.3089458496010864	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	3602	0.3057205907316245	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCTTGGTACATCGTATGCCG	2944	0.24987268714988967	No Hit
GAATCTGTCTCTTATACACATCTGACGCTTGGTACATCGTATGCCGTCTTC	2771	0.23518927177049737	No Hit
CTGTCTCTTATACACATCTGACGCTTGGTACATCGTATGCCGTCTTCTGCT	2742	0.2327278900016975	No Hit
GCTGTCTCTTATACACATCTGACGCTTGGTACATCGTATGCCGTCTTCTGC	2579	0.21889322695637414	No Hit
GAGCTGTCTCTTATACACATCTGACGCTTGGTACATCGTATGCCGTCTTCT	2516	0.21354608725173996	No Hit
CCTGTCTCTTATACACATCTGACGCTTGGTACATCGTATGCCGTCTTCTGC	2150	0.18248175182481752	No Hit
AAGCTGTCTCTTATACACATCTGACGCTTGGTACATCGTATGCCGTCTTCT	1698	0.14411814632490239	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCTTGGTACATCGTATGC	1690	0.14343914445764724	No Hit
TAGAGCTGTCTCTTATACACATCTGACGCTTGGTACATCGTATGCCGTCTT	1351	0.11466644033271091	No Hit
AAGAGCTGTCTCTTATACACATCTGACGCTTGGTACATCGTATGCCGTCTT	1312	0.11135630622984213	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGGACAA	20	7.033358E-4	45.000004	18
AGCGTTG	20	7.033358E-4	45.000004	1
CGGGTAT	20	7.033358E-4	45.000004	6
CGGGTAC	55	1.8189894E-12	45.000004	6
CGTGGAC	20	7.033358E-4	45.000004	25
CCTTACG	20	7.033358E-4	45.000004	44
CTACTTT	20	7.033358E-4	45.000004	21
CGAGTTA	20	7.033358E-4	45.000004	29
CGTGCTA	20	7.033358E-4	45.000004	24
CTATCCG	20	7.033358E-4	45.000004	18
TTGTCGA	20	7.033358E-4	45.000004	16
CCGTGTT	20	7.033358E-4	45.000004	19
CGCGCCA	20	7.033358E-4	45.000004	38
TATGCGC	20	7.033358E-4	45.000004	17
GTTCGCG	20	7.033358E-4	45.000004	1
TGATTCG	40	6.8157533E-9	45.000004	15
TACGAGT	20	7.033358E-4	45.000004	42
GGACGTA	20	7.033358E-4	45.000004	28
CGTACTG	20	7.033358E-4	45.000004	30
CGGCTAA	20	7.033358E-4	45.000004	33