##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546603_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1178200 Sequences flagged as poor quality 0 Sequence length 51 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.411442878967918 31.0 31.0 33.0 30.0 34.0 2 31.75253182821253 31.0 31.0 34.0 30.0 34.0 3 31.812736377525038 31.0 31.0 34.0 30.0 34.0 4 35.58114751315566 37.0 35.0 37.0 33.0 37.0 5 35.49402478356816 37.0 35.0 37.0 33.0 37.0 6 35.55252843320319 37.0 35.0 37.0 33.0 37.0 7 35.91585723985741 37.0 35.0 37.0 35.0 37.0 8 34.573887285690034 37.0 35.0 37.0 32.0 37.0 9 36.87362586997114 39.0 37.0 39.0 33.0 39.0 10 36.92086063486675 39.0 37.0 39.0 32.0 39.0 11 36.80478102189781 39.0 35.0 39.0 33.0 39.0 12 36.03289594296384 37.0 35.0 39.0 32.0 39.0 13 35.62944491597352 37.0 35.0 39.0 31.0 39.0 14 36.60332286538788 38.0 35.0 41.0 31.0 41.0 15 36.943338142929896 38.0 35.0 41.0 32.0 41.0 16 37.122786453912745 38.0 35.0 41.0 32.0 41.0 17 37.01409607876422 38.0 35.0 41.0 32.0 41.0 18 36.93654303174334 38.0 35.0 40.0 32.0 41.0 19 36.82681293498557 37.0 35.0 40.0 32.0 41.0 20 36.581175521982686 37.0 35.0 40.0 32.0 41.0 21 36.48377270412494 37.0 35.0 40.0 32.0 41.0 22 36.38906212867085 37.0 35.0 40.0 31.0 41.0 23 36.33073077575963 37.0 35.0 40.0 32.0 41.0 24 36.20261755219827 37.0 35.0 40.0 31.0 41.0 25 36.12944067221185 36.0 35.0 40.0 31.0 41.0 26 36.01356391105075 36.0 35.0 40.0 31.0 41.0 27 35.90971736547276 36.0 35.0 40.0 31.0 41.0 28 35.96201408928874 36.0 35.0 40.0 31.0 41.0 29 35.94542522491937 36.0 35.0 40.0 31.0 41.0 30 35.89542946868104 36.0 35.0 40.0 31.0 41.0 31 35.7088142929893 36.0 35.0 40.0 30.0 41.0 32 35.41071804447462 36.0 34.0 40.0 30.0 41.0 33 35.16881089797997 36.0 34.0 40.0 29.0 41.0 34 34.959373620777455 36.0 34.0 40.0 27.0 41.0 35 34.771407231369885 36.0 34.0 40.0 26.0 41.0 36 34.54664573077576 36.0 34.0 40.0 24.0 41.0 37 34.43767187234765 36.0 34.0 40.0 24.0 41.0 38 34.35087081989475 35.0 34.0 40.0 24.0 41.0 39 34.295864878628414 36.0 34.0 40.0 23.0 41.0 40 34.082366321507386 35.0 34.0 40.0 23.0 41.0 41 34.06016720420981 36.0 34.0 40.0 23.0 41.0 42 34.00794941436089 35.0 34.0 40.0 22.0 41.0 43 33.85432354438975 35.0 33.0 40.0 22.0 41.0 44 33.730935325072146 35.0 33.0 40.0 21.0 41.0 45 33.61141402138856 35.0 33.0 40.0 21.0 41.0 46 33.55040485486335 35.0 33.0 40.0 20.0 41.0 47 33.49655746053302 35.0 33.0 40.0 20.0 41.0 48 33.499040061110165 35.0 33.0 40.0 20.0 41.0 49 33.508462909523004 35.0 33.0 40.0 20.0 41.0 50 33.34534968596164 35.0 33.0 39.0 20.0 41.0 51 32.95292564929554 35.0 33.0 39.0 18.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 1.0 11 1.0 12 1.0 13 5.0 14 19.0 15 28.0 16 99.0 17 282.0 18 651.0 19 1305.0 20 2297.0 21 3930.0 22 6253.0 23 8805.0 24 12738.0 25 17450.0 26 21852.0 27 23998.0 28 24624.0 29 26507.0 30 30680.0 31 36886.0 32 46194.0 33 60658.0 34 109292.0 35 205682.0 36 80855.0 37 94861.0 38 134899.0 39 227137.0 40 210.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 30.93914445764726 25.112374809030726 29.07867934136819 14.869801391953827 2 29.739093532507216 28.89543371244271 28.774656255304702 12.590816499745374 3 27.55457477508063 26.65693430656934 32.77431675437107 13.01417416397895 4 23.659650314038362 29.339246307927347 32.57222882362926 14.428874554405024 5 23.516211169580718 31.69309115600068 30.952384994058736 13.838312680359872 6 19.42132065863181 41.27669326090647 28.193345781700902 11.108640298760822 7 79.65260566966559 6.201154303174334 11.418774401629603 2.72746562553047 8 75.82371414021388 8.98226107621796 9.307163469699542 5.886861313868613 9 73.30826684773383 7.100237650653539 13.834153793922932 5.757341707689696 10 49.084960108640296 19.756832456289256 16.913597012391783 14.244610422678663 11 44.05270751994568 21.237735528772706 22.51145815650993 12.198098794771687 12 38.23162451196741 20.914870140892887 25.365472755050078 15.48803259208963 13 19.909268375488033 40.201748429808184 28.351043965370902 11.53793922933288 14 13.280597521643184 43.90315735868274 28.53191308776099 14.284332031913088 15 10.327873026650822 24.906976744186046 51.550925140044136 13.214225089118994 16 11.36131386861314 19.714479714819216 48.86139874384654 20.0628076727211 17 12.35664573077576 21.83092853505347 29.982430826684777 35.829994907486 18 17.807672721099983 24.43532507214395 36.238414530639965 21.51858767611611 19 24.078254965201154 27.364963503649637 27.58606348667459 20.970718044474623 20 26.13766762858598 24.872941775589883 26.238669156340176 22.75072143948396 21 18.66576133084366 31.957222882362927 29.66661008317773 19.710405703615685 22 18.912663384824306 25.717789848922084 26.743846545578 28.62570022067561 23 15.916313019860803 32.98260057715159 24.28017314547615 26.820913257511457 24 17.810813104736038 26.074775080631476 37.25819046002377 18.856221354608728 25 14.425055168901716 27.412154133423865 35.32235613647938 22.840434561195046 26 13.244355796978441 33.72899337973179 31.473349176710236 21.553301646579527 27 16.754625700220675 33.63647937531829 29.44517059921915 20.163724325241894 28 14.449414360889493 30.217450347988457 38.246647428280426 17.086487862841622 29 14.74113053810898 25.062468171787472 37.3152266168732 22.88117467323035 30 17.770412493634357 29.633084365982004 34.26141571889323 18.33508742149041 31 26.698438295705312 27.02130368358513 25.65124766593108 20.629010354778476 32 28.405703615684942 27.937362077745714 26.964691902902732 16.69224240366661 33 25.779154642675266 27.801137328127652 27.030215583092854 19.389492446104224 34 20.15625530470209 27.809709726701747 29.75131556611781 22.282719402478357 35 19.887879816669496 26.612374809030726 30.44669835342047 23.05304702087931 36 28.136649125785095 22.857324732643015 30.340349685961638 18.665676455610253 37 20.911135630622983 30.861483619079955 30.24435579697844 17.983024953318623 38 20.57808521473434 30.75564420302156 24.98472245798676 23.681548124257343 39 19.85494822610762 31.659141062637925 27.0295365812256 21.45637413002886 40 21.887879816669496 26.150314038363604 27.848497708368697 24.113308436598203 41 15.814547615005942 25.673909353250725 27.913342386691564 30.598200645051776 42 23.322101510779156 25.111271430996435 25.92199966049907 25.644627397725344 43 22.77355287727041 25.021133933118318 28.353250721439483 23.852062468171788 44 21.42743167543711 29.435409947377355 27.553810897979968 21.583347479205568 45 17.586233237141403 32.8706501442879 25.383805805465965 24.159310813104735 46 23.836105924291292 29.280852147343406 27.77609913427262 19.106942794092685 47 21.987353590222373 26.00458326260397 28.483788830419282 23.524274316754372 48 23.174927856051607 22.000679001867255 30.78585978611441 24.038533355966727 49 22.53191308776099 20.407231369886265 32.153963673400106 24.90689186895264 50 20.038448480733322 27.609319300628076 29.434476319809878 22.91775589882872 51 18.14029876082159 29.463249023934818 25.471736547275505 26.924715667968087 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 4374.0 1 4118.5 2 3863.0 3 8190.5 4 12518.0 5 9127.0 6 5736.0 7 6724.0 8 7712.0 9 8811.0 10 9910.0 11 10443.5 12 10977.0 13 10851.0 14 10725.0 15 10527.0 16 10329.0 17 9858.5 18 9388.0 19 8936.0 20 8484.0 21 8160.0 22 7836.0 23 7300.0 24 6764.0 25 6950.5 26 7216.0 27 7295.0 28 7382.5 29 7470.0 30 8994.0 31 10518.0 32 12298.5 33 14079.0 34 16033.0 35 17987.0 36 18961.5 37 19936.0 38 26905.0 39 33874.0 40 54488.5 41 75103.0 42 98437.0 43 121771.0 44 137792.0 45 153813.0 46 152787.0 47 151761.0 48 134231.5 49 116702.0 50 99543.5 51 82385.0 52 72469.0 53 62553.0 54 54548.5 55 46544.0 56 41156.0 57 35768.0 58 32554.0 59 29340.0 60 25794.5 61 22249.0 62 20037.0 63 17825.0 64 15589.5 65 13354.0 66 10112.0 67 6870.0 68 5892.5 69 4915.0 70 4577.0 71 4239.0 72 3433.0 73 2627.0 74 2281.0 75 1326.0 76 717.0 77 612.0 78 507.0 79 364.0 80 221.0 81 134.5 82 48.0 83 36.0 84 24.0 85 16.0 86 8.0 87 5.5 88 3.0 89 3.5 90 4.0 91 3.0 92 2.0 93 1.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 1178200.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 26.123182535066746 #Duplication Level Percentage of deduplicated Percentage of total 1 80.6433032863324 21.066597319796095 2 8.137555282361552 4.251576840606549 3 2.83974214505385 2.225493072232912 4 1.4451374970354667 1.510063624933079 5 0.8760473018630868 1.1442571787961067 6 0.6332827441975968 0.9926016433789082 7 0.4413990854964536 0.8071524216864775 8 0.34369564666825353 0.7182739291538074 9 0.2696926485131966 0.6340707256928247 >10 2.5540090618648166 15.249253845693259 >50 1.1153530799442106 21.275388225861537 >100 0.6907279563840371 25.755485867773242 >500 0.00435684785686192 0.7851465501245464 >1k 0.005362274285368516 2.918209724437041 >5k 3.3514214283553227E-4 0.6664290298336359 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 7612 0.6460702766932609 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC 3640 0.3089458496010864 No Hit AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 3602 0.3057205907316245 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCTTGGTACATCGTATGCCG 2944 0.24987268714988967 No Hit GAATCTGTCTCTTATACACATCTGACGCTTGGTACATCGTATGCCGTCTTC 2771 0.23518927177049737 No Hit CTGTCTCTTATACACATCTGACGCTTGGTACATCGTATGCCGTCTTCTGCT 2742 0.2327278900016975 No Hit GCTGTCTCTTATACACATCTGACGCTTGGTACATCGTATGCCGTCTTCTGC 2579 0.21889322695637414 No Hit GAGCTGTCTCTTATACACATCTGACGCTTGGTACATCGTATGCCGTCTTCT 2516 0.21354608725173996 No Hit CCTGTCTCTTATACACATCTGACGCTTGGTACATCGTATGCCGTCTTCTGC 2150 0.18248175182481752 No Hit AAGCTGTCTCTTATACACATCTGACGCTTGGTACATCGTATGCCGTCTTCT 1698 0.14411814632490239 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCTTGGTACATCGTATGC 1690 0.14343914445764724 No Hit TAGAGCTGTCTCTTATACACATCTGACGCTTGGTACATCGTATGCCGTCTT 1351 0.11466644033271091 No Hit AAGAGCTGTCTCTTATACACATCTGACGCTTGGTACATCGTATGCCGTCTT 1312 0.11135630622984213 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 1.6975046681378373E-4 0.0 0.0 0.2422339161432694 0.0 2 1.6975046681378373E-4 0.0 0.0 0.8603802410456629 0.0 3 1.6975046681378373E-4 0.0 0.0 1.2099813274486504 0.0 4 1.6975046681378373E-4 0.0 0.0 2.034713970463419 0.0 5 1.6975046681378373E-4 0.0 0.0 3.311916482770328 0.0 6 1.6975046681378373E-4 0.0 0.0 4.928789679171618 0.0 7 1.6975046681378373E-4 0.0 0.0 5.777117637073502 0.0 8 1.6975046681378373E-4 0.0 0.0 8.21464946528603 0.0 9 1.6975046681378373E-4 0.0 0.0 9.325157019181804 0.0 10 1.6975046681378373E-4 0.0 0.0 11.349091835002547 0.0 11 1.6975046681378373E-4 0.0 0.0 12.760566966559159 0.0 12 1.6975046681378373E-4 0.0 0.0 14.128331352911221 0.0 13 1.6975046681378373E-4 0.0 0.0 14.61195043286369 0.0 14 1.6975046681378373E-4 0.0 0.0 14.804107961296893 0.0 15 1.6975046681378373E-4 0.0 0.0 15.07044644372772 0.0 16 1.6975046681378373E-4 0.0 0.0 15.603717535223222 0.0 17 1.6975046681378373E-4 0.0 0.0 16.141911390256322 0.0 18 1.6975046681378373E-4 0.0 0.0 17.051349516211168 0.0 19 1.6975046681378373E-4 0.0 0.0 17.406127991851978 0.0 20 1.6975046681378373E-4 0.0 0.0 17.760057715158716 0.0 21 1.6975046681378373E-4 0.0 0.0 18.115854693600408 0.0 22 1.6975046681378373E-4 0.0 0.0 18.443303344084196 0.0 23 1.6975046681378373E-4 0.0 0.0 18.79876082159226 0.0 24 1.6975046681378373E-4 0.0 0.0 19.065353929723308 0.0 25 1.6975046681378373E-4 0.0 0.0 19.263367849261584 0.0 26 1.6975046681378373E-4 0.0 0.0 19.465201154303173 0.0 27 1.6975046681378373E-4 0.0 0.0 19.697674418604652 0.0 28 1.6975046681378373E-4 0.0 0.0 19.886861313868614 0.0 29 1.6975046681378373E-4 0.0 0.0 20.09039212357834 0.0 30 1.6975046681378373E-4 0.0 0.0 20.416313019860805 0.0 31 2.5462570022067563E-4 0.0 0.0 20.67229672381599 0.0 32 2.5462570022067563E-4 0.0 0.0 20.88007129519606 0.0 33 2.5462570022067563E-4 0.0 0.0 21.096078764216603 0.0 34 2.5462570022067563E-4 0.0 0.0 21.30071295196062 0.0 35 2.5462570022067563E-4 0.0 0.0 21.561619419453404 0.0 36 2.5462570022067563E-4 0.0 0.0 21.773468002037006 0.0 37 2.5462570022067563E-4 0.0 0.0 21.975640808012223 0.0 38 2.5462570022067563E-4 0.0 0.0 22.167204209811576 0.0 39 2.5462570022067563E-4 0.0 0.0 22.38117467323035 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGGACAA 20 7.033358E-4 45.000004 18 AGCGTTG 20 7.033358E-4 45.000004 1 CGGGTAT 20 7.033358E-4 45.000004 6 CGGGTAC 55 1.8189894E-12 45.000004 6 CGTGGAC 20 7.033358E-4 45.000004 25 CCTTACG 20 7.033358E-4 45.000004 44 CTACTTT 20 7.033358E-4 45.000004 21 CGAGTTA 20 7.033358E-4 45.000004 29 CGTGCTA 20 7.033358E-4 45.000004 24 CTATCCG 20 7.033358E-4 45.000004 18 TTGTCGA 20 7.033358E-4 45.000004 16 CCGTGTT 20 7.033358E-4 45.000004 19 CGCGCCA 20 7.033358E-4 45.000004 38 TATGCGC 20 7.033358E-4 45.000004 17 GTTCGCG 20 7.033358E-4 45.000004 1 TGATTCG 40 6.8157533E-9 45.000004 15 TACGAGT 20 7.033358E-4 45.000004 42 GGACGTA 20 7.033358E-4 45.000004 28 CGTACTG 20 7.033358E-4 45.000004 30 CGGCTAA 20 7.033358E-4 45.000004 33 >>END_MODULE