SRR1546602_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1546602_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	3198307
Sequences flagged as poor quality	0
Sequence length	51
%GC	42

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	54838	1.714594627720228	No Hit
CGTTTCTGTCTCTTATACACATCTGACGCAGCCACTTTCGTATGCCGTCTT	5561	0.17387323981093747	No Hit
CGTTTTCTGTCTCTTATACACATCTGACGCAGCCACTTTCGTATGCCGTCT	4196	0.13119441004256313	No Hit
CGTTCTGTCTCTTATACACATCTGACGCAGCCACTTTCGTATGCCGTCTTC	4194	0.13113187695865344	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	3926	0.12275244371475283	No Hit
CTGTCTCTTATACACATCTGACGCAGCCACTTTCGTATGCCGTCTTCTGCT	3791	0.11853146055084768	TruSeq Adapter, Index 16 (95% over 22bp)
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	3536	0.11055849235236018	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGTTTTT	37230	43.990734	1
CGACGGT	260	41.53846	28
TAACGCG	65	41.53846	1
TACGGGA	520	39.375	4
CACGACG	275	39.272728	26
AGGGCGA	3150	39.214287	6
CTTGCGG	320	38.67188	2
CGAGGGT	740	38.61487	4
TCACGAC	280	38.57143	25
AGTACGG	245	38.57143	2
AAGGGCG	1295	38.571426	5
GTTTTTT	41620	38.523544	2
CGTTCGG	370	38.310814	45
TATAGCG	100	38.25	1
TGCGGGT	750	38.100002	4
ATACGAA	460	37.663044	19
GCGGGTA	545	37.56881	5
TCTTGCG	150	37.5	1
AGCGGGT	790	37.310127	4
CGGTCTA	290	37.24138	31