Basic Statistics
Measure | Value |
---|---|
Filename | SRR1546600_1.fastq.gz |
File type | Conventional base calls |
Encoding | Illumina 1.5 |
Total Sequences | 2198952 |
Sequences flagged as poor quality | 0 |
Sequence length | 51 |
%GC | 46 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 20137 | 0.9157544139208131 | No Hit |
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC | 2670 | 0.12142147714001943 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CGGTCTA | 385 | 0.0 | 42.662334 | 31 |
CGTTTTT | 10680 | 0.0 | 41.945225 | 1 |
CGTAAGG | 275 | 0.0 | 40.090908 | 2 |
TCACGAC | 405 | 0.0 | 40.0 | 25 |
TAGTACG | 80 | 0.0 | 39.375 | 1 |
CGACGGT | 420 | 0.0 | 39.107143 | 28 |
TACGGGA | 565 | 0.0 | 38.62832 | 4 |
CACGACG | 420 | 0.0 | 38.57143 | 26 |
GTACGGG | 730 | 0.0 | 38.527397 | 3 |
AGGGCGA | 2410 | 0.0 | 38.184647 | 6 |
CGTTCGG | 800 | 0.0 | 37.6875 | 45 |
CTCACGA | 430 | 0.0 | 37.67442 | 24 |
TAGGGTA | 1135 | 0.0 | 37.665195 | 5 |
ACATACG | 550 | 0.0 | 37.636364 | 17 |
CTTAACG | 60 | 1.5643309E-10 | 37.499996 | 1 |
ATCGCTA | 30 | 1.1402612E-4 | 37.499996 | 42 |
TAGGGAC | 1955 | 0.0 | 37.404095 | 5 |
GCGATAT | 205 | 0.0 | 37.317074 | 9 |
CATACGA | 555 | 0.0 | 37.2973 | 18 |
GGCGATA | 960 | 0.0 | 37.26562 | 8 |