SRR1546597_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1546597_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	2107415
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	12281	0.582751854760453	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	4336	0.20574969808983992	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	3465	0.1644194427770515	No Hit
CTGTCTCTTATACACATCTGACGCATGTGCTTTCGTATGCCGTCTTCTGCT	3259	0.15464443405783865	TruSeq Adapter, Index 13 (95% over 22bp)
GAGCTGTCTCTTATACACATCTGACGCATGTGCTTTCGTATGCCGTCTTCT	2816	0.13362342016166726	No Hit
CCTGTCTCTTATACACATCTGACGCATGTGCTTTCGTATGCCGTCTTCTGC	2802	0.13295909918074988	TruSeq Adapter, Index 19 (95% over 21bp)
AAGCTGTCTCTTATACACATCTGACGCATGTGCTTTCGTATGCCGTCTTCT	2316	0.10989767084318941	No Hit
GCTGTCTCTTATACACATCTGACGCATGTGCTTTCGTATGCCGTCTTCTGC	2258	0.10714548392224596	TruSeq Adapter, Index 19 (95% over 21bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AACCGTA	20	7.034625E-4	45.000004	16
ATCCGAT	20	7.034625E-4	45.000004	19
TACGATA	20	7.034625E-4	45.000004	27
CGCTATA	20	7.034625E-4	45.000004	30
CCGAAAC	20	7.034625E-4	45.000004	40
TCACGAC	150	0.0	45.0	25
AATCCCG	25	3.891917E-5	45.0	36
CATCTCG	25	3.891917E-5	45.0	34
GTCGACG	30	2.1663673E-6	44.999996	1
ACGTATC	30	2.1663673E-6	44.999996	34
CTCCGAT	80	0.0	42.187504	38
TGCGAAG	230	0.0	41.08696	1
CGTTTTT	8140	0.0	40.85381	1
ACGTTAG	50	1.0822987E-9	40.5	1
TAGGGCG	860	0.0	40.2907	5
ACGTAGG	285	0.0	40.263157	2
CGTAAGG	365	0.0	40.068493	2
TCCGATT	85	0.0	39.705883	39
ATTCGGC	285	0.0	39.473686	17
AGGGCGA	2175	0.0	38.68966	6