SRR1546596_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1546596_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1026168
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	6116	0.5960037732612984	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGTGGCAACTCGTATGCCG	2717	0.26477146042363436	No Hit
GAATCTGTCTCTTATACACATCTGACGCGTGGCAACTCGTATGCCGTCTTC	2367	0.23066398484458683	RNA PCR Primer, Index 34 (95% over 22bp)
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	1846	0.17989257119691904	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGTGGCAACTCGTATGC	1693	0.16498273187236398	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1116	0.10875412213204856	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTATGCG	30	2.1652722E-6	45.000004	1
CGAACCC	40	6.8139343E-9	45.000004	34
CGGCATA	20	7.0329313E-4	45.000004	14
TAACGCC	60	0.0	45.000004	12
TAACACG	20	7.0329313E-4	45.000004	1
ACGCTAG	20	7.0329313E-4	45.000004	1
TACGTAT	20	7.0329313E-4	45.000004	45
TACGTAG	60	0.0	45.000004	1
CAAACGA	25	3.8905127E-5	45.0	15
CGTTCGA	25	3.8905127E-5	45.0	14
TACGACG	35	1.2117562E-7	45.0	1
CGGTCTA	75	0.0	45.0	31
TTCGCTA	25	3.8905127E-5	45.0	1
AATGTCG	25	3.8905127E-5	45.0	1
ATAGTAG	110	0.0	42.954544	1
GCGATAA	150	0.0	42.0	9
TGATTCG	145	0.0	41.896553	15
CGTTCGG	140	0.0	41.785713	45
TCGATAG	70	0.0	41.785713	1
GTGTAAG	185	0.0	41.351353	1