SRR1546590_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1546590_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1372260
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	6011	0.4380365236908458	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	3633	0.2647457478903415	No Hit
CTGTCTCTTATACACATCTGACGCAGTCCACCTCGTATGCCGTCTTCTGCT	1807	0.13168058531182136	RNA PCR Primer, Index 16 (96% over 26bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AACGTAA	40	6.8175723E-9	45.0	12
CGTATCG	20	7.033766E-4	45.0	35
CTATCGG	25	3.891203E-5	45.0	2
CGTGAGC	20	7.033766E-4	45.0	33
CCTGTCG	25	3.891203E-5	45.0	17
TCGATAG	40	6.8175723E-9	45.0	1
ACTACGG	20	7.033766E-4	45.0	2
CGAATCG	20	7.033766E-4	45.0	37
CGTCGTT	20	7.033766E-4	45.0	37
CGACTAA	20	7.033766E-4	45.0	13
GTGACCG	20	7.033766E-4	45.0	17
TCGACAG	25	3.891203E-5	45.0	1
TATCGTG	25	3.891203E-5	45.0	1
GCCGTAT	20	7.033766E-4	45.0	42
AATCGTC	20	7.033766E-4	45.0	39
CGCATCG	30	2.1658125E-6	44.999996	21
ACGGATC	30	2.1658125E-6	44.999996	41
TGCACGG	130	0.0	41.538464	2
GTAGGGT	600	0.0	40.875	4
TTTAGCG	50	1.0822987E-9	40.5	1