##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546587_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 887301 Sequences flagged as poor quality 0 Sequence length 51 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.422246791111473 31.0 31.0 33.0 30.0 34.0 2 31.77382083419268 31.0 31.0 34.0 30.0 34.0 3 31.812523596840304 31.0 31.0 34.0 30.0 34.0 4 35.599905781690765 37.0 35.0 37.0 33.0 37.0 5 35.5364707128697 37.0 35.0 37.0 33.0 37.0 6 35.59448372085684 37.0 35.0 37.0 33.0 37.0 7 36.01866108569696 37.0 35.0 37.0 35.0 37.0 8 34.73553506645434 37.0 35.0 37.0 33.0 37.0 9 37.02935982265319 39.0 37.0 39.0 34.0 39.0 10 36.85219559089869 39.0 37.0 39.0 32.0 39.0 11 36.80706997963487 39.0 37.0 39.0 32.0 39.0 12 36.43475776540317 39.0 35.0 39.0 32.0 39.0 13 36.25943394631585 39.0 35.0 39.0 32.0 39.0 14 37.356499091063796 39.0 35.0 41.0 32.0 41.0 15 37.56630500810886 40.0 35.0 41.0 33.0 41.0 16 37.631761938733305 40.0 35.0 41.0 33.0 41.0 17 37.54445785590234 39.0 35.0 41.0 33.0 41.0 18 37.45974139553545 39.0 36.0 41.0 32.0 41.0 19 37.365422782122415 39.0 36.0 41.0 32.0 41.0 20 37.19468139898411 39.0 35.0 41.0 32.0 41.0 21 37.074961033516246 39.0 35.0 41.0 32.0 41.0 22 36.98564297797478 39.0 35.0 41.0 32.0 41.0 23 36.928918146153336 38.0 35.0 41.0 32.0 41.0 24 36.790261703751035 38.0 35.0 41.0 32.0 41.0 25 36.72004765012098 38.0 35.0 41.0 31.0 41.0 26 36.60742972227012 38.0 35.0 41.0 31.0 41.0 27 36.5054710859111 38.0 35.0 40.0 31.0 41.0 28 36.50231094070671 38.0 35.0 40.0 31.0 41.0 29 36.48233012247253 38.0 35.0 40.0 31.0 41.0 30 36.41916215579606 38.0 35.0 40.0 31.0 41.0 31 36.27858979083761 38.0 35.0 40.0 30.0 41.0 32 36.066775536148384 38.0 35.0 41.0 30.0 41.0 33 35.85778783073613 38.0 35.0 41.0 29.0 41.0 34 35.677422881299584 38.0 35.0 41.0 28.0 41.0 35 35.50506986918757 38.0 35.0 41.0 27.0 41.0 36 35.34954203815842 38.0 35.0 41.0 26.0 41.0 37 35.294416438164724 38.0 35.0 41.0 26.0 41.0 38 35.212651625547586 38.0 34.0 40.0 25.0 41.0 39 35.15518860003539 38.0 35.0 40.0 25.0 41.0 40 35.0366752657779 38.0 34.0 40.0 24.0 41.0 41 34.975520144798665 38.0 34.0 40.0 24.0 41.0 42 34.918805456096635 38.0 34.0 40.0 24.0 41.0 43 34.84106069980762 38.0 34.0 40.0 24.0 41.0 44 34.73759975476191 38.0 34.0 40.0 23.0 41.0 45 34.62521624567086 37.0 34.0 40.0 23.0 41.0 46 34.56970408012614 37.0 34.0 40.0 23.0 41.0 47 34.51452551050883 37.0 34.0 40.0 23.0 41.0 48 34.47401163753901 37.0 34.0 40.0 23.0 41.0 49 34.42472396627525 37.0 34.0 40.0 23.0 41.0 50 34.31496977913921 37.0 34.0 40.0 23.0 41.0 51 33.929450096415984 36.0 33.0 40.0 22.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 1.0 12 3.0 13 6.0 14 12.0 15 9.0 16 70.0 17 190.0 18 430.0 19 909.0 20 1486.0 21 2270.0 22 3458.0 23 5307.0 24 8026.0 25 11741.0 26 15665.0 27 17187.0 28 17508.0 29 18303.0 30 20573.0 31 24663.0 32 30462.0 33 39430.0 34 63706.0 35 106872.0 36 64479.0 37 80629.0 38 121897.0 39 231816.0 40 193.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 32.12156866722792 24.37064761563438 28.411102883914253 15.09668083322345 2 33.255118612511424 25.457313808955472 28.53642675935224 12.751140819180865 3 27.84094687146752 24.695340138239448 33.772868507980945 13.69084448231209 4 23.83881005431077 28.012478290906916 33.63345696668887 14.515254688093442 5 21.989155878332156 31.74075088386016 32.48446693962928 13.785626298178407 6 19.09171746678974 40.70163338032979 29.64236487956173 10.56428427331875 7 85.27354302542204 3.9063406893489354 9.151347738816929 1.6687685464120967 8 83.75106080123881 5.7112524385749595 8.312399061874155 2.225287698312072 9 81.43189289767508 4.688487897568018 10.880862300391863 2.998756904365035 10 38.70546747946864 29.319588279512814 17.968648744901675 14.006295496116875 11 33.31293439317661 28.244304920201824 24.695227436912614 13.74753324970895 12 30.68564106205222 25.003803669780606 28.618022519979124 15.692532748188045 13 21.2449890172557 34.14433208122159 29.815699520230453 14.794979381292256 14 17.17726002788231 37.07152364304785 30.528648113774242 15.222568215295599 15 15.210509173324496 26.847146571456587 42.98620197655587 14.956142278663046 16 17.612850656090774 23.740872601293134 41.426528314517846 17.219748428098246 17 17.340000743828757 23.830357454798314 31.36996351858051 27.45967828279242 18 20.79350750196382 25.442437233813553 34.298958301636084 19.46509696258654 19 24.207230691726934 27.202381153633322 29.51332186033826 19.077066294301485 20 26.062970739354512 25.75743744231101 28.456070713320507 19.72352110501397 21 21.589742376036995 28.786623704920878 30.858186793433116 18.76544712560901 22 21.545901559899065 25.897750594217744 29.24486729982272 23.31148054606047 23 19.152125377972073 30.14523819988933 28.20767698898119 22.49495943315741 24 19.111665601639128 27.341567292271733 36.202145607860245 17.3446214982289 25 17.820784604097145 27.554121994678244 34.537772413194624 20.08732098802999 26 17.065347610337415 32.54059220039198 30.21545112650611 20.178609062764497 27 18.303258984268023 31.4746630512081 30.500585483392896 19.72149248113098 28 16.739302671810353 29.632447162800446 35.72834922985548 17.899900935533715 29 16.800161388300026 26.933588489137282 35.14297853828633 21.123271584276363 30 18.65646494256177 29.57711081132558 32.6454044343464 19.121019811766242 31 24.754508334826625 28.578577055587672 27.750560407347674 18.916354202238022 32 24.224023189425008 28.647099462301966 28.230329955674566 18.898547392598452 33 22.833739621616566 29.20711235533376 27.440519057230862 20.518628965818813 34 19.39995559567723 29.736132383486552 29.04842888715329 21.815483133682932 35 19.420579938487617 28.66952702634168 30.03253687305661 21.877356162114097 36 24.893130966830874 28.865289231050117 27.0355831899209 19.205996612198113 37 20.03164653257463 32.212856741962426 28.625122703569588 19.13037402189336 38 20.39510831161015 32.149518596282434 26.56685837162361 20.888514720483805 39 20.234959726180858 31.95060075442268 27.376504703589877 20.437934815806585 40 22.325456637600993 29.004362668361694 27.043923088106514 21.626257605930796 41 18.884910532051695 28.085621452021353 28.06026365348399 24.96920436244296 42 21.585797829597848 28.768816895281308 26.26121237325327 23.384172901867572 43 21.645754935472855 28.410764779933757 27.45156378726047 22.491916497332923 44 20.496201401779103 30.918482003288624 27.888056026083596 20.697260568848677 45 19.05452602893494 32.93065149256002 25.900680828715394 22.114141649789644 46 22.020486847191652 31.166424922320612 26.8992145844533 19.913873646034435 47 21.400066042977524 29.560318313627505 27.672120283872104 21.367495359522866 48 22.22549056070037 27.40941349102503 28.822575428180514 21.542520520094083 49 20.90587072481604 26.89087468626768 29.88771566807656 22.315538920839714 50 20.058131344380318 30.538453129208694 28.225934603928092 21.1774809224829 51 19.505782141573153 31.319247921505777 26.38326791021311 22.79170202670796 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 1140.0 1 1258.5 2 1377.0 3 6833.0 4 12289.0 5 8577.5 6 4866.0 7 5137.0 8 5408.0 9 5915.0 10 6422.0 11 6847.5 12 7273.0 13 7224.5 14 7176.0 15 7124.0 16 7072.0 17 6703.0 18 6334.0 19 6243.0 20 6152.0 21 6215.5 22 6279.0 23 6486.5 24 6694.0 25 7072.5 26 9046.5 27 10642.0 28 12197.5 29 13753.0 30 14993.5 31 16234.0 32 18911.0 33 21588.0 34 23737.0 35 25886.0 36 28599.5 37 31313.0 38 35069.0 39 38825.0 40 47558.0 41 56291.0 42 63438.0 43 70585.0 44 73978.0 45 77371.0 46 79466.0 47 81561.0 48 81103.5 49 80646.0 50 76233.0 51 71820.0 52 64325.0 53 56830.0 54 49979.5 55 43129.0 56 37758.5 57 32388.0 58 27663.0 59 22938.0 60 20072.0 61 17206.0 62 14526.5 63 11847.0 64 9945.0 65 8043.0 66 6350.5 67 4658.0 68 3649.5 69 2641.0 70 2244.0 71 1847.0 72 1555.5 73 1264.0 74 1085.5 75 735.0 76 563.0 77 464.5 78 366.0 79 231.0 80 96.0 81 90.0 82 84.0 83 56.0 84 28.0 85 18.5 86 9.0 87 6.0 88 3.0 89 2.0 90 1.0 91 2.0 92 3.0 93 2.0 94 1.0 95 0.5 96 0.0 97 0.0 98 0.0 99 0.5 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 887301.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 31.767969394594726 #Duplication Level Percentage of deduplicated Percentage of total 1 78.16399986657107 24.83111555520336 2 6.796719918394927 4.318359807024048 3 2.8214700691335897 2.6889712441200277 4 1.638383807466128 2.0819250660873414 5 1.1645035546646672 1.8496956642241955 6 0.903842347696574 1.7227941623498042 7 0.7391589902544574 1.64371061261002 8 0.5865874956743633 1.4907754887868112 9 0.5165369612176227 1.4768397337624561 >10 6.100689761321458 44.279324025914676 >50 0.5282849218287203 10.408191868529752 >100 0.038360936757086614 1.9328934786632161 >500 7.306845096587903E-4 0.18813620324925345 >1k 3.6534225482939516E-4 0.17351241447108817 >5k 3.6534225482939516E-4 0.9137546750039311 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 7873 0.8872975461540108 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC 1495 0.16848848361491758 No Hit AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 937 0.1056011432422594 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 1.127013268327208E-4 0.0 0.0 0.08159576062688986 0.0 2 1.127013268327208E-4 0.0 0.0 0.24580159382216407 0.0 3 1.127013268327208E-4 0.0 0.0 0.3985118916805008 0.0 4 1.127013268327208E-4 0.0 0.0 0.5839055743203265 0.0 5 1.127013268327208E-4 0.0 0.0 0.9291097384089503 0.0 6 1.127013268327208E-4 0.0 0.0 1.4905877486895653 0.0 7 1.127013268327208E-4 0.0 0.0 1.809194399645667 0.0 8 1.127013268327208E-4 0.0 0.0 2.634618917368514 0.0 9 1.127013268327208E-4 0.0 0.0 3.057812399625381 0.0 10 1.127013268327208E-4 0.0 0.0 3.7006607678792203 0.0 11 1.127013268327208E-4 0.0 0.0 4.204999205455646 0.0 12 1.127013268327208E-4 0.0 0.0 4.6449851854105875 0.0 13 1.127013268327208E-4 0.0 0.0 4.854835055973114 0.0 14 1.127013268327208E-4 0.0 0.0 4.9391356484439894 0.0 15 1.127013268327208E-4 0.0 0.0 5.047216220876568 0.0 16 1.127013268327208E-4 0.0 0.0 5.260559832570909 0.0 17 1.127013268327208E-4 0.0 0.0 5.5242809373594755 0.0 18 1.127013268327208E-4 0.0 0.0 5.92831519405478 0.0 19 1.127013268327208E-4 0.0 0.0 6.089027286118239 0.0 20 1.127013268327208E-4 0.0 0.0 6.281183048368028 0.0 21 1.127013268327208E-4 0.0 0.0 6.522927394424214 0.0 22 1.127013268327208E-4 0.0 0.0 6.768841689573211 0.0 23 1.127013268327208E-4 0.0 0.0 7.050144201347682 0.0 24 1.127013268327208E-4 0.0 0.0 7.258078149354052 0.0 25 1.127013268327208E-4 0.0 0.0 7.44313372801338 0.0 26 1.127013268327208E-4 0.0 0.0 7.619849408487086 0.0 27 1.127013268327208E-4 0.0 0.0 7.807384416336734 0.0 28 1.127013268327208E-4 0.0 0.0 7.99987828256702 0.0 29 1.127013268327208E-4 0.0 0.0 8.21029165976371 0.0 30 1.127013268327208E-4 0.0 0.0 8.484381286620888 0.0 31 1.127013268327208E-4 0.0 0.0 8.709896641613161 0.0 32 1.127013268327208E-4 0.0 0.0 8.933270671395615 0.0 33 1.127013268327208E-4 0.0 0.0 9.150333426875434 0.0 34 1.127013268327208E-4 0.0 0.0 9.382160056170342 0.0 35 1.127013268327208E-4 0.0 0.0 9.631004585816989 0.0 36 1.127013268327208E-4 0.0 0.0 9.854491316926275 0.0 37 1.127013268327208E-4 0.0 0.0 10.081584490494206 0.0 38 1.127013268327208E-4 0.0 0.0 10.322652628589397 0.0 39 1.127013268327208E-4 0.0 0.0 10.554930063191634 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TCGGACA 20 7.0324156E-4 45.000004 13 TCTCGTC 20 7.0324156E-4 45.000004 41 GGACGTT 20 7.0324156E-4 45.000004 8 ATCGACT 20 7.0324156E-4 45.000004 33 AATCGAC 20 7.0324156E-4 45.000004 32 CAGGTCG 25 3.890085E-5 45.0 2 ACGTTAG 55 1.8189894E-12 45.0 1 ACGCTAG 35 1.2115015E-7 45.0 1 CGTCGTT 25 3.890085E-5 45.0 24 ATCGCCG 25 3.890085E-5 45.0 44 CATACGA 125 0.0 44.999996 18 CGTTTTT 5300 0.0 43.04717 1 AGGGTCG 65 0.0 41.538464 6 TGCGTAG 65 0.0 41.538464 1 TATTACG 50 1.0804797E-9 40.5 1 GCGGCTA 200 0.0 40.5 24 TAGGGCG 370 0.0 40.135136 5 GATTCGC 45 1.9274012E-8 40.0 1 AGGGCGC 130 0.0 39.807693 6 CGGCTAC 205 0.0 39.512196 25 >>END_MODULE