##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546582_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 2928545 Sequences flagged as poor quality 0 Sequence length 51 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.398311448176482 31.0 31.0 33.0 30.0 34.0 2 31.757006636401353 31.0 31.0 34.0 30.0 34.0 3 31.814300616859224 31.0 31.0 34.0 30.0 34.0 4 35.60695942865826 37.0 35.0 37.0 33.0 37.0 5 35.54871480547507 37.0 35.0 37.0 33.0 37.0 6 35.590770502075266 37.0 35.0 37.0 33.0 37.0 7 35.97363127423345 37.0 35.0 37.0 35.0 37.0 8 34.65162836835357 37.0 35.0 37.0 33.0 37.0 9 36.91242613652855 39.0 37.0 39.0 33.0 39.0 10 36.85255749868962 39.0 37.0 39.0 32.0 39.0 11 36.79785183427265 39.0 37.0 39.0 32.0 39.0 12 36.526612362111564 39.0 35.0 39.0 32.0 39.0 13 36.450587919939764 39.0 35.0 39.0 32.0 39.0 14 37.52333667401389 40.0 36.0 41.0 32.0 41.0 15 37.67502394533804 40.0 36.0 41.0 32.0 41.0 16 37.71298477571627 40.0 36.0 41.0 33.0 41.0 17 37.608141585667966 40.0 36.0 41.0 32.0 41.0 18 37.49745624533685 39.0 36.0 41.0 32.0 41.0 19 37.40277134208284 39.0 36.0 41.0 32.0 41.0 20 37.225757500738425 39.0 35.0 41.0 32.0 41.0 21 37.11302882489427 39.0 35.0 41.0 32.0 41.0 22 37.04879283056945 39.0 35.0 41.0 32.0 41.0 23 36.96606574254451 39.0 35.0 41.0 32.0 41.0 24 36.81694937246995 38.0 35.0 41.0 31.0 41.0 25 36.707918778779224 38.0 35.0 41.0 31.0 41.0 26 36.60396954801787 38.0 35.0 41.0 31.0 41.0 27 36.472262847250086 38.0 35.0 40.0 31.0 41.0 28 36.48055536110935 38.0 35.0 40.0 31.0 41.0 29 36.41658605211803 38.0 35.0 40.0 30.0 41.0 30 36.331428747039915 38.0 35.0 40.0 30.0 41.0 31 36.18612314306251 38.0 35.0 40.0 30.0 41.0 32 36.02309884259931 38.0 35.0 41.0 30.0 41.0 33 35.82322040467194 38.0 35.0 41.0 29.0 41.0 34 35.5737955196181 38.0 35.0 41.0 27.0 41.0 35 35.4295310469875 38.0 35.0 41.0 26.0 41.0 36 35.29395382348572 38.0 35.0 41.0 25.0 41.0 37 35.24457093881091 38.0 34.0 40.0 25.0 41.0 38 35.14289655784699 38.0 34.0 40.0 25.0 41.0 39 35.0636688184747 38.0 34.0 40.0 24.0 41.0 40 34.92058172232286 38.0 34.0 40.0 24.0 41.0 41 34.82721112361258 38.0 34.0 40.0 23.0 41.0 42 34.743231877946215 38.0 34.0 40.0 23.0 41.0 43 34.64641963842113 37.0 34.0 40.0 23.0 41.0 44 34.509491573460544 37.0 34.0 40.0 23.0 41.0 45 34.39638523567164 37.0 34.0 40.0 23.0 41.0 46 34.34237308970837 37.0 34.0 40.0 23.0 41.0 47 34.26826837217799 37.0 33.0 40.0 23.0 41.0 48 34.186511390468645 36.0 33.0 40.0 23.0 41.0 49 34.11280960340374 36.0 33.0 40.0 23.0 41.0 50 34.003842181014804 36.0 33.0 40.0 23.0 41.0 51 33.63875917904625 35.0 33.0 40.0 22.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 1.0 9 2.0 10 5.0 11 8.0 12 9.0 13 22.0 14 42.0 15 92.0 16 268.0 17 645.0 18 1439.0 19 3070.0 20 5029.0 21 8012.0 22 11791.0 23 17217.0 24 25723.0 25 38226.0 26 51281.0 27 59466.0 28 61434.0 29 64875.0 30 73285.0 31 85588.0 32 104525.0 33 132221.0 34 207449.0 35 298482.0 36 235361.0 37 300099.0 38 428677.0 39 713681.0 40 520.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 34.3673735592248 23.062647150718192 26.194031507113603 16.375947782943406 2 35.66617552402302 23.74097034534214 26.905920858310182 13.686933272324653 3 29.65964326995146 24.266521429583634 32.512220232231364 13.561615068233543 4 25.65731446844764 26.676762692736496 31.841580033771038 15.824342805044825 5 22.610886976297103 30.888786069532827 30.93519136636111 15.565135587808962 6 20.593878530123323 39.20352939770432 29.499905243047316 10.702686829125044 7 82.59644294350949 4.378454147025229 10.698384351273415 2.3267185581918666 8 79.7375488510506 6.518663705013923 10.233306983502047 3.510480460433423 9 76.35778176534764 5.546713470341074 13.655006154933593 4.440498609377695 10 39.94837026578045 25.252403497299852 19.72955853504044 15.069667701879261 11 32.182773356735176 24.780052893160256 26.86491073212124 16.172263017983333 12 28.453651898809817 22.01011082295133 30.973299027332686 18.562938250906168 13 23.898966893115865 26.026576337396218 32.380140991516264 17.694315777971656 14 19.852827940154583 28.940890442182038 33.31674944383644 17.889532173826936 15 19.282988651361 23.21384851521831 39.86795490593452 17.635207927486174 16 22.090833502643804 21.74929871318351 36.9907582092814 19.169109574891287 17 21.95677375625097 22.173263514817084 31.603407152698693 24.266555576233248 18 23.796902557413325 22.765059099313824 33.47150205989664 19.966536283376215 19 26.479702377801946 24.695266762163463 29.039949872718363 19.785080987316228 20 27.165059782246814 24.314121859148486 28.113756148531095 20.407062210073605 21 25.131831677505385 25.69958802067238 30.692442834240214 18.476137467582024 22 24.166096133062666 22.926504458698773 29.921479779207765 22.9859196290308 23 22.4773052829989 26.03118613509439 29.22116614223104 22.270342439675677 24 22.209561403359007 24.12877384503226 33.29742244015373 20.364242311455005 25 22.445412312257453 24.4867331729579 31.224379341959914 21.843475172824732 26 20.266617040202558 26.65262101145791 30.17006738841302 22.91069455992652 27 20.716806468741304 25.664382824918174 31.19460346349467 22.42420724284585 28 20.476857961888925 25.948619536322642 33.03848839611479 20.536034105673636 29 21.888241430471446 25.125958453771414 31.446981350807313 21.53881876494983 30 23.13674538038514 24.712169353723436 31.306228861089725 20.8448564048017 31 26.073323100720664 24.65128587745792 28.197347146791323 21.07804387503009 32 25.858233354788812 24.949761741752305 28.235010901317892 20.956994002140995 33 25.4952544693696 24.56916318513118 27.848231801116253 22.08735054438296 34 21.46635957446445 26.894789050535334 30.09077886800442 21.548072506995794 35 22.05641367983077 26.494009823991092 29.287820402281678 22.161756093896457 36 25.257491348092653 26.720982603989352 27.66728870480051 20.354237343117486 37 22.91940195557862 28.173956691804293 28.342197234462844 20.56444411815424 38 22.674877797677688 28.60598010274727 27.456296556822586 21.26284554275246 39 22.45514410739804 27.082527330124684 27.56358532991639 22.89874323256088 40 23.718331116646663 24.828711868863206 29.092740593024864 22.360216421465267 41 21.116117389352052 24.438279077152647 29.122994524584733 25.322609008910568 42 23.236419450614555 25.724310194994445 27.72479166275403 23.31447869163697 43 22.645853145503995 25.270569514895623 28.5269647555356 23.55661258406478 44 21.981222757376102 26.662660126445044 28.600858105304855 22.755259010874003 45 21.189191219530517 27.221026140967613 28.14240518755901 23.44737745194286 46 23.00108074146035 26.58156183360679 28.367295021930683 22.050062403002173 47 22.036642769703043 26.13167972491459 29.31633285471113 22.51534465067124 48 22.65281906202568 25.525918160724864 29.721756025603156 22.099506751646295 49 22.876957670105806 24.56294849490105 29.656672511434863 22.903421323558284 50 21.58918507313359 26.163743428904112 29.661009135936105 22.586062362026194 51 21.469057159784125 26.882018203578912 28.27096732336365 23.377957313273313 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 3133.0 1 4346.0 2 5559.0 3 28694.5 4 51830.0 5 35572.0 6 19314.0 7 19189.5 8 19065.0 9 19593.5 10 20122.0 11 20311.0 12 20500.0 13 20341.0 14 20182.0 15 19474.0 16 18766.0 17 18144.5 18 17523.0 19 16928.5 20 16334.0 21 16040.5 22 15747.0 23 16861.0 24 17975.0 25 19609.5 26 24107.0 27 26970.0 28 30122.5 29 33275.0 30 37430.0 31 41585.0 32 47177.5 33 52770.0 34 59913.0 35 67056.0 36 72140.5 37 77225.0 38 88787.0 39 100349.0 40 114856.5 41 129364.0 42 150556.0 43 171748.0 44 185677.0 45 199606.0 46 211868.5 47 224131.0 48 230706.0 49 237281.0 50 230693.5 51 224106.0 52 206109.5 53 188113.0 54 177049.5 55 165986.0 56 154609.5 57 143233.0 58 136013.0 59 128793.0 60 121113.5 61 113434.0 62 104543.5 63 95653.0 64 85471.5 65 75290.0 66 64713.5 67 54137.0 68 47182.5 69 40228.0 70 33647.5 71 27067.0 72 23141.5 73 19216.0 74 15548.0 75 9315.5 76 6751.0 77 5083.5 78 3416.0 79 2445.0 80 1474.0 81 1005.0 82 536.0 83 441.0 84 346.0 85 248.5 86 151.0 87 97.5 88 44.0 89 28.5 90 13.0 91 13.0 92 13.0 93 10.0 94 7.0 95 5.0 96 3.0 97 2.0 98 1.0 99 0.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 2928545.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 24.887085079513476 #Duplication Level Percentage of deduplicated Percentage of total 1 79.67602374440942 19.82903981724453 2 6.6979648842645805 3.333856438685725 3 2.2781148230595227 1.7008691226714938 4 1.2861582755417342 1.280349217165099 5 0.8776717973843209 1.0921346346696554 6 0.6490210934917066 0.9691345903276182 7 0.5303829118597939 0.923977925652235 8 0.4365282625983655 0.8691132808718178 9 0.36128981237663266 0.8092305269080845 >10 5.397902102976515 33.743786296594756 >50 1.6467284956139288 27.805676288123827 >100 0.15608609713107527 5.309182966776179 >500 0.004560148310620515 0.755622609719448 >1k 0.001425046347068911 0.4976129182846886 >5k 0.0 0.0 >10k+ 1.425046347068911E-4 1.08041336630495 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 30464 1.040243533905062 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 6.829329923221258E-5 0.0 0.0 0.05975663682818601 0.0 2 6.829329923221258E-5 0.0 0.0 0.19668470178877223 0.0 3 6.829329923221258E-5 0.0 0.0 0.32364194506145544 0.0 4 6.829329923221258E-5 0.0 0.0 0.5097753321188508 0.0 5 6.829329923221258E-5 0.0 0.0 0.8763054690981358 0.0 6 6.829329923221258E-5 0.0 0.0 1.5409017105764125 0.0 7 6.829329923221258E-5 0.0 0.0 1.9307881558931141 0.0 8 1.0243994884831887E-4 0.0 0.0 2.8982651794662537 0.0 9 1.0243994884831887E-4 0.0 0.0 3.4352895379787576 0.0 10 1.0243994884831887E-4 0.0 0.0 4.192901253011308 0.0 11 1.0243994884831887E-4 0.0 0.0 4.680856876025467 0.0 12 1.0243994884831887E-4 0.0 0.0 5.1002118799608676 0.0 13 1.0243994884831887E-4 0.0 0.0 5.3062869103940695 0.0 14 1.0243994884831887E-4 0.0 0.0 5.405243900981546 0.0 15 1.0243994884831887E-4 0.0 0.0 5.504610651364414 0.0 16 1.0243994884831887E-4 0.0 0.0 5.696753848754245 0.0 17 1.0243994884831887E-4 0.0 0.0 5.8955556428192155 0.0 18 1.0243994884831887E-4 0.0 0.0 6.209704819287394 0.0 19 1.0243994884831887E-4 0.0 0.0 6.341032833710939 0.0 20 1.0243994884831887E-4 0.0 0.0 6.491380531970655 0.0 21 1.0243994884831887E-4 0.0 0.0 6.664947951969323 0.0 22 1.0243994884831887E-4 0.0 0.0 6.8531642846533005 0.0 23 1.0243994884831887E-4 0.0 0.0 7.05592709007374 0.0 24 1.0243994884831887E-4 0.0 0.0 7.224031046133831 0.0 25 1.0243994884831887E-4 0.0 0.0 7.37058846628616 0.0 26 1.0243994884831887E-4 0.0 0.0 7.5127068219883935 0.0 27 1.0243994884831887E-4 0.0 0.0 7.669508237025553 0.0 28 1.0243994884831887E-4 0.0 0.0 7.820231548431047 0.0 29 1.0243994884831887E-4 0.0 0.0 7.99455019472127 0.0 30 1.0243994884831887E-4 0.0 0.0 8.217493670064828 0.0 31 1.3658659846442516E-4 0.0 0.0 8.398880672825584 0.0 32 1.3658659846442516E-4 0.0 0.0 8.57948230264517 0.0 33 1.3658659846442516E-4 0.0 0.0 8.762098584792106 0.0 34 1.7073324808053147E-4 0.0 0.0 8.960763792258613 0.0 35 1.7073324808053147E-4 0.0 0.0 9.169741287909183 0.0 36 1.7073324808053147E-4 0.0 0.0 9.358947873432028 0.0 37 1.7073324808053147E-4 0.0 0.0 9.55081789762493 0.0 38 1.7073324808053147E-4 0.0 0.0 9.779054103658984 0.0 39 1.7073324808053147E-4 0.0 0.0 10.097164291482631 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGTTTTT 18360 0.0 42.132355 1 TACGGGA 685 0.0 41.386864 4 CGTTCGG 795 0.0 39.905663 45 GCGATAT 265 0.0 39.056602 9 GGGCGAT 6105 0.0 38.144962 7 CGGTCTA 250 0.0 37.800003 31 AGGGCGA 3070 0.0 37.52443 6 ACGGGAT 610 0.0 37.2541 5 GGCGATT 1620 0.0 37.22222 8 AGGGTAC 1240 0.0 36.471775 6 TTACGGG 715 0.0 36.188812 3 GGCGATA 1215 0.0 36.11111 8 TACGAAC 25 0.0021076398 36.0 34 GCGTAAG 150 0.0 36.0 1 GTACGGG 945 0.0 35.95238 3 CTCACGA 265 0.0 35.660378 24 CGTAAGG 330 0.0 35.454544 2 TAAGGGA 2090 0.0 35.20335 4 TAGCGGG 1555 0.0 35.160774 3 TAGGGAC 1620 0.0 35.13889 5 >>END_MODULE