SRR1546581_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1546581_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1328796
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	7560	0.5689360895126114	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCCTTTACCTTCGTATGCCG	4724	0.35550979984888575	No Hit
GAATCTGTCTCTTATACACATCTGACGCCTTTACCTTCGTATGCCGTCTTC	4687	0.35272532427851977	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCCTTTACCTTCGTATGC	2636	0.19837507036445023	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	2344	0.17640029018750808	No Hit
GCTGTCTCTTATACACATCTGACGCCTTTACCTTCGTATGCCGTCTTCTGC	1837	0.13824544926384486	No Hit
GAACTGTCTCTTATACACATCTGACGCCTTTACCTTCGTATGCCGTCTTCT	1509	0.11356144961303316	No Hit
CTGTCTCTTATACACATCTGACGCCTTTACCTTCGTATGCCGTCTTCTGCT	1498	0.11273363255157301	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TTTAGCG	85	0.0	45.000004	1
CGCACAT	25	3.8911356E-5	45.0	28
TAAATCG	20	7.0336845E-4	45.0	35
TTCGACT	20	7.0336845E-4	45.0	27
CGGTCTA	210	0.0	43.92857	31
CGTAAGG	230	0.0	42.06522	2
CGTTTTT	5045	0.0	41.43211	1
GCGTAAG	120	0.0	41.250004	1
CACGACG	225	0.0	40.0	26
ATAGGGT	405	0.0	39.444447	4
ATAGACG	40	3.458772E-7	39.375	1
TCACGAC	245	0.0	38.57143	25
CTCACGA	245	0.0	38.57143	24
TAATCGG	35	6.249027E-6	38.571426	2
TACGGGT	100	0.0	38.25	4
TAAGGGA	915	0.0	38.11475	4
GCGCGAC	480	0.0	37.968754	9
GATGAAT	1055	0.0	37.962086	20
CGATGAA	1030	0.0	37.79126	19
ACCCGCT	460	0.0	37.663044	34