SRR1546580_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1546580_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1642884
Sequences flagged as poor quality	0
Sequence length	51
%GC	40

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	58802	3.579193661877528	No Hit
CGTTTCTGTCTCTTATACACATCTGACGCCACTTCCGTCGTATGCCGTCTT	4836	0.29436040523859264	No Hit
CGTTTTCTGTCTCTTATACACATCTGACGCCACTTCCGTCGTATGCCGTCT	3844	0.233978783651189	No Hit
CGTTCTGTCTCTTATACACATCTGACGCCACTTCCGTCGTATGCCGTCTTC	3230	0.1966054815799533	No Hit
CGTTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2043	0.1243544888135742	No Hit
CGTTTTTCTGTCTCTTATACACATCTGACGCCACTTCCGTCGTATGCCGTC	1850	0.11260685477489586	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1718	0.10457220351528167	No Hit
CTGTCTCTTATACACATCTGACGCCACTTCCGTCGTATGCCGTCTTCTGCT	1654	0.10067661502577176	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGCATCG	110	0.0	45.0	21
CCCGTAC	25	3.89154E-5	45.0	40
ACTCGTC	25	3.89154E-5	45.0	16
ACGTCGG	25	3.89154E-5	45.0	2
TATCGCG	40	6.8175723E-9	45.0	1
CAATACG	20	7.0341735E-4	45.0	1
ATCGATC	20	7.0341735E-4	45.0	37
CGTTTTT	27830	0.0	44.029823	1
AATACGG	115	0.0	43.04348	2
CGTTGAT	75	0.0	42.000004	25
CGTTCGG	370	0.0	40.743244	45
CGGGTAC	145	0.0	40.344826	6
TATACGG	95	0.0	40.26316	2
CGACGGT	185	0.0	40.135136	28
GTTTACG	45	1.9292202E-8	40.0	1
CGTTAGG	220	0.0	39.886364	2
CGTTCTG	435	0.0	39.827583	1
GTTTTTT	30045	0.0	39.59311	2
GTATACG	40	3.4594268E-7	39.375	1
GGTACGT	150	0.0	39.000004	9