FastQCFastQC Report
Thu 26 May 2016
SRR1546580_1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1546580_1.fastq.gz
File typeConventional base calls
EncodingIllumina 1.5
Total Sequences1642884
Sequences flagged as poor quality0
Sequence length51
%GC40

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT588023.579193661877528No Hit
CGTTTCTGTCTCTTATACACATCTGACGCCACTTCCGTCGTATGCCGTCTT48360.29436040523859264No Hit
CGTTTTCTGTCTCTTATACACATCTGACGCCACTTCCGTCGTATGCCGTCT38440.233978783651189No Hit
CGTTCTGTCTCTTATACACATCTGACGCCACTTCCGTCGTATGCCGTCTTC32300.1966054815799533No Hit
CGTTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT20430.1243544888135742No Hit
CGTTTTTCTGTCTCTTATACACATCTGACGCCACTTCCGTCGTATGCCGTC18500.11260685477489586No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA17180.10457220351528167No Hit
CTGTCTCTTATACACATCTGACGCCACTTCCGTCGTATGCCGTCTTCTGCT16540.10067661502577176No Hit

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGCATCG1100.045.021
CCCGTAC253.89154E-545.040
ACTCGTC253.89154E-545.016
ACGTCGG253.89154E-545.02
TATCGCG406.8175723E-945.01
CAATACG207.0341735E-445.01
ATCGATC207.0341735E-445.037
CGTTTTT278300.044.0298231
AATACGG1150.043.043482
CGTTGAT750.042.00000425
CGTTCGG3700.040.74324445
CGGGTAC1450.040.3448266
TATACGG950.040.263162
CGACGGT1850.040.13513628
GTTTACG451.9292202E-840.01
CGTTAGG2200.039.8863642
CGTTCTG4350.039.8275831
GTTTTTT300450.039.593112
GTATACG403.4594268E-739.3751
GGTACGT1500.039.0000049