##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546578_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 2914800 Sequences flagged as poor quality 0 Sequence length 51 %GC 42 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.422691093728556 31.0 31.0 33.0 30.0 34.0 2 31.77692397420063 31.0 31.0 34.0 30.0 34.0 3 31.661957938795116 31.0 31.0 34.0 30.0 34.0 4 35.569366680389734 37.0 35.0 37.0 33.0 37.0 5 35.54670646356525 37.0 35.0 37.0 33.0 37.0 6 35.599726910937285 37.0 35.0 37.0 33.0 37.0 7 36.012086935638806 37.0 35.0 37.0 35.0 37.0 8 34.70096473171401 37.0 35.0 37.0 33.0 37.0 9 36.973302113352545 39.0 37.0 39.0 33.0 39.0 10 36.88714079868259 39.0 37.0 39.0 32.0 39.0 11 36.87822835185948 39.0 37.0 39.0 32.0 39.0 12 36.80736036777824 39.0 35.0 39.0 32.0 39.0 13 36.82637024838754 39.0 37.0 39.0 33.0 39.0 14 38.00721250171539 40.0 37.0 41.0 33.0 41.0 15 38.094011252916154 40.0 37.0 41.0 33.0 41.0 16 38.07133731302319 40.0 37.0 41.0 33.0 41.0 17 37.94547447509263 40.0 37.0 41.0 33.0 41.0 18 37.70192088651022 39.0 36.0 41.0 33.0 41.0 19 37.46261904761905 39.0 36.0 41.0 33.0 41.0 20 37.141127693152185 39.0 35.0 41.0 32.0 41.0 21 37.070858377933305 39.0 35.0 41.0 32.0 41.0 22 36.9951118430081 38.0 35.0 41.0 32.0 41.0 23 36.90600555784273 38.0 35.0 41.0 32.0 41.0 24 36.745078221490324 38.0 35.0 41.0 32.0 41.0 25 36.64980135858378 38.0 35.0 40.0 31.0 41.0 26 36.56201008645533 38.0 35.0 40.0 31.0 41.0 27 36.44900644984219 38.0 35.0 40.0 31.0 41.0 28 36.39576368876081 38.0 35.0 40.0 31.0 41.0 29 36.28850693014958 38.0 35.0 40.0 31.0 41.0 30 36.14436942500343 38.0 35.0 40.0 30.0 41.0 31 35.87639117606697 38.0 35.0 40.0 30.0 41.0 32 35.42377864690545 38.0 35.0 40.0 25.0 41.0 33 34.86673836969946 38.0 34.0 40.0 22.0 41.0 34 34.30076677645121 38.0 33.0 40.0 18.0 41.0 35 33.92826163030053 38.0 33.0 40.0 15.0 41.0 36 33.72835666254974 38.0 33.0 40.0 15.0 41.0 37 33.650661451900646 38.0 33.0 40.0 14.0 41.0 38 33.5326320845341 38.0 33.0 40.0 12.0 41.0 39 33.41853437628654 38.0 33.0 40.0 12.0 41.0 40 33.31585975024015 38.0 33.0 40.0 10.0 41.0 41 33.18238198161109 38.0 33.0 40.0 10.0 41.0 42 33.11024152600522 37.0 32.0 40.0 10.0 41.0 43 33.01080691642651 37.0 32.0 40.0 10.0 41.0 44 32.88404796212433 37.0 32.0 40.0 10.0 41.0 45 32.78762659530671 37.0 32.0 40.0 10.0 41.0 46 32.7139724852477 37.0 31.0 40.0 10.0 41.0 47 32.66239570467957 37.0 31.0 40.0 10.0 41.0 48 32.578403320982574 36.0 31.0 40.0 10.0 41.0 49 32.50097159324825 36.0 31.0 40.0 10.0 41.0 50 32.402369630849456 36.0 31.0 40.0 10.0 41.0 51 32.04530259365994 35.0 31.0 40.0 10.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 1.0 9 2.0 10 1.0 11 5.0 12 7.0 13 15.0 14 32.0 15 119.0 16 283.0 17 783.0 18 1919.0 19 3792.0 20 6526.0 21 10275.0 22 15837.0 23 24053.0 24 38106.0 25 63443.0 26 92280.0 27 99511.0 28 88519.0 29 78288.0 30 76877.0 31 83638.0 32 97043.0 33 118486.0 34 171078.0 35 233532.0 36 222395.0 37 276764.0 38 403704.0 39 707021.0 40 465.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 30.352374090846713 20.85072732262934 24.09853163167284 24.698366954851107 2 42.119871003156305 21.607520241526004 24.28393028681213 11.988678468505558 3 26.0966447097571 22.039796898586523 39.61822423493893 12.245334156717442 4 22.339028406751748 24.52260875531769 39.48157678056813 13.656786057362428 5 20.149375600384246 28.228935089886097 38.37237546315356 13.249313846576094 6 17.68337450253877 36.30245642925758 36.23469877864691 9.779470289556745 7 76.24101139014684 3.1124605461781254 18.791272128447922 1.8552559352271167 8 73.71051187045423 5.580897488678469 18.060312885961302 2.648277754905997 9 70.3997186770962 5.057568272265678 20.964697406340058 3.5780156442980653 10 30.303211198023877 27.900713599560863 28.097433786194593 13.698641416220667 11 24.252881844380404 24.037463976945244 36.07163441745575 15.638019761218608 12 22.31727734321394 20.8364896390833 39.43618773157678 17.41004528612598 13 21.101550706738024 21.692671881432688 40.82420749279539 16.381569919033893 14 18.453684643886373 25.16923974200631 39.59825717030328 16.778818443804035 15 18.02041306436119 23.346335940716344 42.74722107863318 15.886029916289282 16 20.58292164127899 22.248147385755455 40.8320982571703 16.336832715795254 17 19.906854672704817 22.61788115822698 38.85851516399067 18.616749005077533 18 20.8888088376561 22.698675723891863 39.44527926444353 16.96723617400851 19 22.014546452586796 25.11599423631124 36.2107863318238 16.658672979278165 20 22.880986688623576 23.852579936873887 35.624365308082886 17.642068066419654 21 22.06923288047207 24.98960477562783 37.01684506655688 15.924317277343214 22 20.659290517359683 22.452998490462466 37.07702072183341 19.81069027034445 23 18.896699602031013 25.52428983120626 36.67243035542747 18.906580211335257 24 19.41155482365857 24.07108549471662 38.77278029367366 17.744579387951145 25 20.151262522299987 24.539316591189788 36.68766296143818 18.621757925072046 26 18.5414093591327 24.948572800878278 37.28863043776588 19.221387402223137 27 19.07451626183615 23.71233017702758 37.67088651022368 19.542267050912585 28 18.88496637848223 25.059695347879785 38.131432688349115 17.92390558528887 29 20.13160422670509 24.19449018800604 37.1547962124331 18.519109372855773 30 21.38997529847674 23.543364896390834 37.43526142445451 17.631398380677922 31 22.602339783175516 23.665911897900372 35.163887745299846 18.567860573624262 32 22.96445725264169 24.375120076849182 34.69277480444627 17.96764786606285 33 22.307499656923287 24.598634554686427 33.80564704267874 19.288218745711543 34 20.459860024701523 26.870660079593794 34.077501029230135 18.59197886647454 35 20.300603815013037 26.937388500068614 33.24303554274736 19.51897214217099 36 21.87398792369974 28.779676135583916 30.626801152737755 18.719534787978592 37 21.143989296006588 27.91285851516399 31.581858103471937 19.361294085357486 38 21.479964320021956 29.008096610402085 30.436496500617537 19.07544256895842 39 21.006792918896664 27.111602854398242 30.603163167284205 21.278441059420885 40 22.071600109784548 26.267085220255247 31.598943323727184 20.062371346233018 41 20.15829559489502 26.43797173047894 31.744167695896802 21.659564978729243 42 21.714079868258544 27.45244956772334 29.997426924660353 20.83604363935776 43 21.028989982160013 26.727425552353505 31.17740496775079 21.066179497735693 44 21.387539453821873 27.517256758611225 30.75785645670372 20.33734733086318 45 20.950974337861947 26.793330588719638 31.266913681899272 20.988781391519144 46 21.630609304240426 27.651777137367915 30.083436256346918 20.634177302044737 47 21.038184438040346 27.131741457389875 31.08460271716756 20.745471387402223 48 21.082372718539865 26.53911074516262 31.41141759297379 20.967098943323727 49 21.37048854123782 25.60412378207767 31.304926581583643 21.720461095100866 50 20.368430080966103 25.885343762865375 32.673974200631264 21.072251955537258 51 20.349595169479894 26.533175518045837 31.620145464525866 21.4970838479484 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 2129.0 1 3330.5 2 4532.0 3 54721.5 4 104911.0 5 73369.5 6 41828.0 7 41550.5 8 41273.0 9 42534.0 10 43795.0 11 44294.0 12 44793.0 13 44300.0 14 43807.0 15 42303.0 16 40799.0 17 38531.0 18 36263.0 19 34551.0 20 32839.0 21 31060.5 22 29282.0 23 28701.0 24 28120.0 25 28961.0 26 31041.0 27 32280.0 28 35445.0 29 38610.0 30 43542.5 31 48475.0 32 53351.0 33 58227.0 34 66171.0 35 74115.0 36 81411.5 37 88708.0 38 95803.0 39 102898.0 40 114281.5 41 125665.0 42 137593.0 43 149521.0 44 163699.0 45 177877.0 46 198410.5 47 218944.0 48 224865.5 49 230787.0 50 221052.0 51 211317.0 52 193080.5 53 174844.0 54 159286.5 55 143729.0 56 132318.5 57 120908.0 58 112336.5 59 103765.0 60 94806.0 61 85847.0 62 75491.5 63 65136.0 64 57783.0 65 50430.0 66 41174.0 67 31918.0 68 26363.0 69 20808.0 70 17460.5 71 14113.0 72 11707.0 73 9301.0 74 7559.5 75 4639.5 76 3461.0 77 2581.0 78 1701.0 79 1219.0 80 737.0 81 568.0 82 399.0 83 271.0 84 143.0 85 111.5 86 80.0 87 58.0 88 36.0 89 24.0 90 12.0 91 11.0 92 10.0 93 6.5 94 3.0 95 2.5 96 2.0 97 1.5 98 1.0 99 1.0 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 2914800.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 34.313173605029185 #Duplication Level Percentage of deduplicated Percentage of total 1 74.62940468599216 25.607717190304278 2 7.270847494862366 4.989717046938078 3 3.5723285619446083 3.6773379036062885 4 2.233993313402233 3.0662160158098075 5 1.6605910298051054 2.8490074146328386 6 1.2566747381623813 2.5872299073372234 7 1.0394286844923308 2.4966267830722715 8 0.8867066371141606 2.434057502082385 9 0.7963040129725324 2.4591346055557124 >10 6.498010811367648 41.463977367736796 >50 0.11776010483264997 2.6022293705237187 >100 0.03405967957895663 2.1087223885417514 >500 0.0023546222599518875 0.6078912617328955 >1k 0.0014332483321440044 0.8704735894675708 >5k 0.0 0.0 >10k+ 1.0237488086742889E-4 2.1796616526583255 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 62049 2.128756689995883 No Hit CGTTTCTGTCTCTTATACACATCTGACGCGGATACGTTCGTATGCCGTCTT 4339 0.14886098531631672 No Hit CGTTTTCTGTCTCTTATACACATCTGACGCGGATACGTTCGTATGCCGTCT 3216 0.11033347056401811 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 3.430767119527926E-5 0.0 0.0 0.05338273637985454 0.0 2 3.430767119527926E-5 0.0 0.0 0.16224097708247565 0.0 3 3.430767119527926E-5 0.0 0.0 0.31751749691230957 0.0 4 3.430767119527926E-5 0.0 0.0 0.4779744750926307 0.0 5 3.430767119527926E-5 0.0 0.0 0.8410525593522712 0.0 6 3.430767119527926E-5 0.0 0.0 1.6439892960065872 0.0 7 3.430767119527926E-5 0.0 0.0 2.181796349663785 0.0 8 3.430767119527926E-5 0.0 0.0 3.29731027857829 0.0 9 3.430767119527926E-5 0.0 0.0 4.021030602442706 0.0 10 3.430767119527926E-5 0.0 0.0 4.93735419239742 0.0 11 3.430767119527926E-5 0.0 0.0 5.347811170577741 0.0 12 3.430767119527926E-5 0.0 0.0 5.762487992315082 0.0 13 3.430767119527926E-5 0.0 0.0 6.032969672018663 0.0 14 3.430767119527926E-5 0.0 0.0 6.176341429943736 0.0 15 3.430767119527926E-5 0.0 0.0 6.283449979415397 0.0 16 3.430767119527926E-5 0.0 0.0 6.434575271030602 0.0 17 3.430767119527926E-5 0.0 0.0 6.584122409770825 0.0 18 3.430767119527926E-5 0.0 0.0 6.854123782077672 0.0 19 3.430767119527926E-5 0.0 0.0 6.96257033072595 0.0 20 6.861534239055853E-5 0.0 0.0 7.101241937697269 0.0 21 6.861534239055853E-5 0.0 0.0 7.2283518594757785 0.0 22 6.861534239055853E-5 0.0 0.0 7.365925620968849 0.0 23 6.861534239055853E-5 0.0 0.0 7.52274598600247 0.0 24 6.861534239055853E-5 0.0 0.0 7.6570605187319885 0.0 25 6.861534239055853E-5 6.861534239055853E-5 0.0 7.776622752847537 0.0 26 6.861534239055853E-5 6.861534239055853E-5 0.0 7.897557293810896 0.0 27 1.029230135858378E-4 6.861534239055853E-5 0.0 8.042335666254974 0.0 28 1.029230135858378E-4 6.861534239055853E-5 0.0 8.180046658432826 0.0 29 1.029230135858378E-4 6.861534239055853E-5 0.0 8.326917798819816 0.0 30 1.029230135858378E-4 6.861534239055853E-5 0.0 8.53067105804858 0.0 31 1.029230135858378E-4 6.861534239055853E-5 0.0 8.687319884726225 0.0 32 1.029230135858378E-4 6.861534239055853E-5 0.0 8.848360093316865 0.0 33 1.029230135858378E-4 6.861534239055853E-5 0.0 9.020069987649238 0.0 34 1.029230135858378E-4 6.861534239055853E-5 0.0 9.18917249897077 0.0 35 1.029230135858378E-4 6.861534239055853E-5 0.0 9.368361465623714 0.0 36 1.029230135858378E-4 6.861534239055853E-5 0.0 9.544359818855495 0.0 37 1.3723068478111705E-4 6.861534239055853E-5 0.0 9.71679017428297 0.0 38 1.3723068478111705E-4 6.861534239055853E-5 0.0 9.927748044462742 0.0 39 1.3723068478111705E-4 6.861534239055853E-5 0.0 10.168965280636751 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGTTTTT 44700 0.0 43.716442 1 AGGGCGA 3205 0.0 38.541344 6 GTTTTTT 49740 0.0 38.468033 2 TAGGGCG 1345 0.0 38.308548 5 GACCGAT 1325 0.0 37.18868 9 ATAGGGA 3105 0.0 37.173912 4 GGGCGAT 6295 0.0 36.92216 7 GGCGATA 1110 0.0 36.68919 8 CGTTCGG 565 0.0 36.63717 45 CGTAAGG 295 0.0 36.61017 2 TAATGCG 130 0.0 36.346157 1 GCGTTAG 180 0.0 36.250004 1 TACGGGA 805 0.0 36.0559 4 TGGGCGA 2010 0.0 36.044777 6 CACGACC 625 0.0 36.0 27 GCGCAAC 25 0.0021076386 36.0 9 TAGGGAC 2260 0.0 35.940266 5 CGGGTAC 415 0.0 35.78313 6 AAGGGAC 2240 0.0 35.758926 5 ATAGCGG 455 0.0 35.6044 2 >>END_MODULE