##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546576_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 3774680 Sequences flagged as poor quality 0 Sequence length 51 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.409122892536587 31.0 31.0 33.0 30.0 34.0 2 31.770278540167645 31.0 31.0 34.0 30.0 34.0 3 31.806843758941156 31.0 31.0 34.0 30.0 34.0 4 35.6044284548624 37.0 35.0 37.0 33.0 37.0 5 35.54455450528257 37.0 35.0 37.0 33.0 37.0 6 35.59094333824324 37.0 35.0 37.0 33.0 37.0 7 36.0126241164814 37.0 35.0 37.0 35.0 37.0 8 34.70376137844797 37.0 35.0 37.0 33.0 37.0 9 36.98227319931756 39.0 37.0 39.0 33.0 39.0 10 36.858449457967296 39.0 37.0 39.0 32.0 39.0 11 36.79331678446915 39.0 37.0 39.0 32.0 39.0 12 36.61422186781396 39.0 35.0 39.0 32.0 39.0 13 36.54166631343584 39.0 35.0 39.0 32.0 39.0 14 37.64630061356194 40.0 36.0 41.0 32.0 41.0 15 37.79655546960272 40.0 36.0 41.0 33.0 41.0 16 37.83831371136096 40.0 36.0 41.0 33.0 41.0 17 37.72476050950014 40.0 36.0 41.0 33.0 41.0 18 37.62728337236534 39.0 36.0 41.0 33.0 41.0 19 37.52319905263492 39.0 36.0 41.0 33.0 41.0 20 37.3402155944345 39.0 35.0 41.0 32.0 41.0 21 37.23347700997171 39.0 35.0 41.0 32.0 41.0 22 37.15622410376509 39.0 35.0 41.0 32.0 41.0 23 37.093880275943924 39.0 35.0 41.0 32.0 41.0 24 36.96527122828955 39.0 35.0 41.0 32.0 41.0 25 36.85781443725031 38.0 35.0 41.0 31.0 41.0 26 36.77196504074517 38.0 35.0 41.0 31.0 41.0 27 36.66302123623724 38.0 35.0 41.0 31.0 41.0 28 36.64042329416004 38.0 35.0 41.0 31.0 41.0 29 36.599525787616436 38.0 35.0 41.0 31.0 41.0 30 36.52526147911876 38.0 35.0 41.0 31.0 41.0 31 36.401159303570104 38.0 35.0 41.0 30.0 41.0 32 36.213667383725245 38.0 35.0 41.0 30.0 41.0 33 35.99261500312609 38.0 35.0 41.0 29.0 41.0 34 35.775141204022596 38.0 35.0 41.0 27.0 41.0 35 35.60061780071423 38.0 35.0 41.0 27.0 41.0 36 35.46184418281815 38.0 35.0 41.0 26.0 41.0 37 35.4181035213581 38.0 35.0 41.0 25.0 41.0 38 35.319673720686254 38.0 35.0 41.0 25.0 41.0 39 35.224493996842114 38.0 35.0 40.0 25.0 41.0 40 35.117282524611355 38.0 34.0 40.0 24.0 41.0 41 35.03370802293175 38.0 34.0 40.0 24.0 41.0 42 34.966398741085335 38.0 34.0 40.0 24.0 41.0 43 34.873887322898895 38.0 34.0 40.0 23.0 41.0 44 34.75388642216029 38.0 34.0 40.0 23.0 41.0 45 34.65159669164009 38.0 34.0 40.0 23.0 41.0 46 34.58670854218106 37.0 34.0 40.0 23.0 41.0 47 34.527939322008756 37.0 34.0 40.0 23.0 41.0 48 34.45412723727574 37.0 34.0 40.0 23.0 41.0 49 34.39263619697564 37.0 34.0 40.0 23.0 41.0 50 34.29614430892155 37.0 34.0 40.0 23.0 41.0 51 33.961091801159306 36.0 33.0 40.0 22.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 1.0 8 1.0 9 3.0 10 5.0 11 7.0 12 5.0 13 19.0 14 53.0 15 103.0 16 314.0 17 773.0 18 1663.0 19 3330.0 20 5764.0 21 9236.0 22 14099.0 23 21107.0 24 31567.0 25 48083.0 26 66974.0 27 76737.0 28 77566.0 29 79452.0 30 88733.0 31 105405.0 32 128541.0 33 163970.0 34 251686.0 35 376412.0 36 292551.0 37 367825.0 38 549445.0 39 1012466.0 40 784.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 32.867819258851085 22.212240507804633 27.037682664490763 17.882257568853518 2 34.08641262305679 24.375152330793604 28.085586062924538 13.452848983225069 3 27.139731050049278 24.527615585956955 34.60182055167591 13.730832812317864 4 24.293291086926576 27.31908400182267 33.40288448292306 14.9847404283277 5 21.77326289910668 31.21938813356364 32.41445632477455 14.59289264255513 6 19.862478408765778 39.13174096877086 30.099531615925056 10.906249006538303 7 83.91911367321202 3.3678616465501707 10.776171754956712 1.9368529252810833 8 81.1575550775165 5.537025655154874 10.275493551771275 3.0299257155573454 9 77.91839308232751 5.229449913635063 13.310532283531321 3.541624720506109 10 35.28293789142391 32.852957071857745 19.143689001451776 12.720416035266565 11 27.4651361174987 24.33740078629182 31.963451206459887 16.234011889749596 12 26.497107039537127 21.992009918721585 32.90512043405004 18.605762607691247 13 22.029602509351786 27.426669280574778 33.78222789746415 16.761500312609282 14 18.08804984793413 30.59371920268738 33.59203959011095 17.72619135926754 15 16.782959085273454 24.932497589199613 41.05306939926033 17.231473926266595 16 19.992953045026333 23.067756736994923 38.79807029999894 18.141219917979804 17 18.76749817203048 23.175024108003857 33.36486801530196 24.692609704663706 18 21.08933737429398 23.3193807157163 35.60264711180815 19.988634798181568 19 23.346031981518962 26.126002734006594 30.638385240603178 19.88958004387127 20 24.72318183263217 25.239384530609215 30.07415198109509 19.963281655663526 21 22.122537539606007 27.135863172507342 32.08674642618712 18.654852861699535 22 21.517903504403023 23.01972617546388 31.785899731897803 23.676470588235293 23 18.769961957040067 27.909597634766392 31.04019413566183 22.280246272531713 24 19.293158625366917 25.435109731156018 35.9584123687306 19.31331927474647 25 19.718863585787403 26.248582661311687 33.389373403838206 20.6431803490627 26 18.710566193690592 28.496852713342584 30.994309451397207 21.798271641569617 27 19.280071423272965 26.813690167113503 32.33964203588119 21.566596373732345 28 17.940726101285406 27.012408998908516 35.09497493827291 19.951889961533162 29 18.5162980703 25.116433710937088 34.33446013966746 22.03280807909545 30 20.37152818252143 25.18679729142603 33.48516960378098 20.956504922271556 31 22.73435099134231 25.85869530662202 29.879910350016424 21.52704335201924 32 22.098985874299277 26.356830247862074 30.388827662212424 21.155356215626224 33 21.091430266936534 26.40115188572276 29.52287346212129 22.98454438521941 34 18.930955736645224 26.9135131984698 32.38274502739305 21.77278603749192 35 18.970747189165703 26.537216399800776 31.80084139582693 22.691195015206585 36 22.461506670764145 26.440466476628483 30.679660262591796 20.418366590015577 37 19.365032267635932 28.23513516377547 31.061493954454416 21.338338614134177 38 20.66522195258936 28.982774698782414 29.6378765882141 20.71412676041413 39 19.946485529899224 27.341920374707264 30.05102419277926 22.66056990261426 40 22.070877531340404 25.527885807538652 30.432301546091324 21.96893511502962 41 18.74768192270603 25.11227441796391 31.18200748142889 24.958036177901175 42 21.627184291118716 26.872715038095947 28.73070035075821 22.769400320027128 43 21.146428306505452 25.999475452223763 30.144912946263 22.70918329500779 44 20.601772865514427 27.928884037852214 29.985561689997564 21.483781406635792 45 19.81611686288639 28.07032649125224 29.023334428348896 23.090222217512476 46 21.896505134210052 27.639932391619954 29.05570803352867 21.407854440641323 47 20.740831010840655 27.13098858711202 30.209925079741858 21.918255322305466 48 21.00305191433446 26.48717242256297 30.334174022698612 22.175601640403954 49 21.098954083524962 25.052057392944565 30.79182871130798 23.057159812222494 50 20.039764960208547 26.44515561584028 31.898968919219644 21.616110504731527 51 19.77704070278805 27.01566755327604 29.75319762205008 23.45409412188583 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 3773.0 1 4860.5 2 5948.0 3 41392.0 4 76836.0 5 51780.0 6 26724.0 7 26574.0 8 26424.0 9 27830.5 10 29237.0 11 29179.5 12 29122.0 13 29209.5 14 29297.0 15 27983.0 16 26669.0 17 25837.5 18 25006.0 19 24548.5 20 24091.0 21 24028.0 22 23965.0 23 26275.0 24 28585.0 25 31680.5 26 39452.0 27 44128.0 28 49072.0 29 54016.0 30 62756.0 31 71496.0 32 78609.0 33 85722.0 34 97082.5 35 108443.0 36 119692.5 37 130942.0 38 145397.0 39 159852.0 40 179426.5 41 199001.0 42 222478.0 43 245955.0 44 265263.5 45 284572.0 46 301812.5 47 319053.0 48 329591.5 49 340130.0 50 322926.5 51 305723.0 52 273184.5 53 240646.0 54 216638.5 55 192631.0 56 171903.0 57 151175.0 58 135107.5 59 119040.0 60 107628.5 61 96217.0 62 84172.5 63 72128.0 64 62788.5 65 53449.0 66 45502.0 67 37555.0 68 31476.5 69 25398.0 70 21313.5 71 17229.0 72 14566.0 73 11903.0 74 10063.5 75 6727.0 76 5230.0 77 3850.0 78 2470.0 79 1763.0 80 1056.0 81 781.5 82 507.0 83 362.5 84 218.0 85 138.0 86 58.0 87 38.5 88 19.0 89 19.5 90 20.0 91 13.5 92 7.0 93 7.0 94 7.0 95 6.5 96 6.0 97 3.5 98 1.0 99 0.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 3774680.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 23.628765972959485 #Duplication Level Percentage of deduplicated Percentage of total 1 78.73557109336137 18.604243831123497 2 7.7144945927864335 3.6456797466522404 3 2.8839571859779127 2.0443304827052065 4 1.5608590765002897 1.4752469534158004 5 0.9475452236857274 1.11946621696328 6 0.6760465262530723 0.9584487093399633 7 0.5006412678096676 0.8280674747436259 8 0.41581202047927407 0.7860099936518563 9 0.3449086355673594 0.7334788888686515 >10 4.132120511938022 23.2036714621845 >50 1.5341839872123306 25.933459959346056 >100 0.5457343329138414 17.299946545468643 >500 0.005107485752074002 0.8208403783260334 >1k 0.0029019805409509925 1.2223875811426117 >5k 0.0 0.0 >10k+ 1.160792216380397E-4 1.324721776068074 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 48298 1.279525681647186 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC 4121 0.1091748174679708 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 7.94769357932328E-5 0.0 0.0 0.08660336770269268 0.0 2 7.94769357932328E-5 0.0 0.0 0.2844214608920491 0.0 3 7.94769357932328E-5 0.0 0.0 0.4703709983362828 0.0 4 7.94769357932328E-5 0.0 0.0 0.7433477804741064 0.0 5 7.94769357932328E-5 0.0 0.0 1.2400521368698803 0.0 6 7.94769357932328E-5 0.0 0.0 2.1353333262687166 0.0 7 7.94769357932328E-5 0.0 0.0 2.679644367204637 0.0 8 7.94769357932328E-5 0.0 0.0 3.947460446978287 0.0 9 7.94769357932328E-5 0.0 0.0 4.590322888297816 0.0 10 7.94769357932328E-5 0.0 0.0 5.4484088717454195 0.0 11 7.94769357932328E-5 0.0 0.0 6.032405395954094 0.0 12 7.94769357932328E-5 0.0 0.0 6.5733519132747675 0.0 13 7.94769357932328E-5 0.0 0.0 6.834089247300433 0.0 14 7.94769357932328E-5 0.0 0.0 6.954125912660146 0.0 15 7.94769357932328E-5 0.0 0.0 7.076679347653311 0.0 16 1.059692477243104E-4 0.0 0.0 7.298684921635742 0.0 17 1.059692477243104E-4 0.0 0.0 7.5589189017347165 0.0 18 1.059692477243104E-4 0.0 0.0 7.9513760106817 0.0 19 1.059692477243104E-4 0.0 0.0 8.130225608528406 0.0 20 1.059692477243104E-4 0.0 0.0 8.321526592982716 0.0 21 1.059692477243104E-4 0.0 0.0 8.543426197717423 0.0 22 1.059692477243104E-4 0.0 0.0 8.787181959795268 0.0 23 1.059692477243104E-4 0.0 0.0 9.056635264446257 0.0 24 1.32461559655388E-4 0.0 0.0 9.261367851049625 0.0 25 1.32461559655388E-4 0.0 0.0 9.440296925832124 0.0 26 1.32461559655388E-4 0.0 0.0 9.608841014337639 0.0 27 1.32461559655388E-4 0.0 0.0 9.79203535134104 0.0 28 1.32461559655388E-4 0.0 0.0 9.98919113673212 0.0 29 1.32461559655388E-4 0.0 0.0 10.198083016308667 0.0 30 1.32461559655388E-4 0.0 0.0 10.476066845401464 0.0 31 1.32461559655388E-4 0.0 0.0 10.68959487956595 0.0 32 1.32461559655388E-4 0.0 0.0 10.904023652336091 0.0 33 1.32461559655388E-4 0.0 0.0 11.12030688694141 0.0 34 1.32461559655388E-4 0.0 0.0 11.333887905729757 0.0 35 1.32461559655388E-4 0.0 0.0 11.56874225099876 0.0 36 1.32461559655388E-4 0.0 0.0 11.778746807676413 0.0 37 1.32461559655388E-4 0.0 0.0 12.005441520870644 0.0 38 1.32461559655388E-4 0.0 0.0 12.23939512753399 0.0 39 1.32461559655388E-4 0.0 0.0 12.512848771286572 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGTTTTT 27345 0.0 42.99232 1 TAATACG 80 0.0 42.1875 1 TCACGAC 530 0.0 38.632076 25 AGGGCGA 2840 0.0 38.34507 6 CGGTCTA 530 0.0 38.207546 31 CGACGGT 535 0.0 37.850468 28 CGAATAT 340 0.0 37.72059 14 TAGGGAC 3435 0.0 37.663757 5 ACGGGAT 1810 0.0 37.417126 5 TAGGGAT 5630 0.0 37.32682 5 CGAGACA 1870 0.0 37.29947 22 TATGGGA 3970 0.0 37.29219 4 GTAGGGA 4845 0.0 37.29102 4 GGGCGAT 6565 0.0 37.220108 7 CACGACC 1895 0.0 37.16359 27 TACGGGA 1400 0.0 37.125 4 CGTAAGG 420 0.0 36.964287 2 CACAACG 1330 0.0 36.879696 12 AACACGT 1770 0.0 36.864407 41 GCGAGAC 1880 0.0 36.861702 21 >>END_MODULE