SRR1546574_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1546574_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	716905
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4438	0.6190499438558805	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	1211	0.16892056827613144	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCAGGGAAGCTCGTATGCCG	732	0.10210557884238497	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CCGGATT	30	2.1643536E-6	45.000004	42
TTTACGG	85	0.0	45.0	2
CGACGGT	55	1.8189894E-12	45.0	28
GCGCGTC	35	1.211065E-7	45.0	38
CGCATCG	35	1.211065E-7	45.0	21
TTCGTAC	25	3.8893326E-5	45.0	33
TAAGTCG	25	3.8893326E-5	45.0	1
TCAGGCG	20	7.031509E-4	45.0	1
TCTACGT	20	7.031509E-4	45.0	29
GTTCGCG	20	7.031509E-4	45.0	1
AATTCGT	25	3.8893326E-5	45.0	31
TATAGCG	20	7.031509E-4	45.0	1
CGGTCTA	55	1.8189894E-12	45.0	31
TAAATCG	20	7.031509E-4	45.0	23
TACGTTG	25	3.8893326E-5	45.0	1
TACGTCC	20	7.031509E-4	45.0	31
TGATTCG	105	0.0	42.857147	15
CGTTTTT	2855	0.0	42.084064	1
CGGGTTT	70	0.0	41.785713	6
ACGGTCT	60	3.6379788E-12	41.250004	30