SRR1546573_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1546573_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	2101652
Sequences flagged as poor quality	0
Sequence length	51
%GC	40

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	50797	2.4170033859078477	No Hit
CGTTTCTGTCTCTTATACACATCTGACGCGTCAATCCTCGTATGCCGTCTT	6600	0.31403867053156276	No Hit
CGTTCTGTCTCTTATACACATCTGACGCGTCAATCCTCGTATGCCGTCTTC	4512	0.21468825476339565	No Hit
CGTTTTCTGTCTCTTATACACATCTGACGCGTCAATCCTCGTATGCCGTCT	4388	0.20878813428674203	No Hit
CGCTGTCTCTTATACACATCTGACGCGTCAATCCTCGTATGCCGTCTTCTG	3618	0.17215028939139304	No Hit
CTGTCTCTTATACACATCTGACGCGTCAATCCTCGTATGCCGTCTTCTGCT	2406	0.1144813698937788	TruSeq Adapter, Index 22 (95% over 22bp)
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2268	0.10791510678266429	No Hit
CCTGTCTCTTATACACATCTGACGCGTCAATCCTCGTATGCCGTCTTCTGC	2252	0.107153800914709	TruSeq Adapter, Index 20 (95% over 21bp)
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	2237	0.1064400766635009	No Hit
CGTCTGTCTCTTATACACATCTGACGCGTCAATCCTCGTATGCCGTCTTCT	2225	0.10586909726253443	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TGCGCGA	20	7.0346217E-4	45.000004	2
CGAGTAG	30	2.1663636E-6	44.999996	1
CGTTTTT	29410	0.0	44.257908	1
CGACGGT	125	0.0	41.4	28
AATCGGT	50	1.0822987E-9	40.5	26
CGTTTCT	955	0.0	40.28796	1
CGATTAC	45	1.929584E-8	40.0	10
GACGGTC	130	0.0	39.80769	29
AGTGCGG	330	0.0	39.545452	2
GCTACGC	40	3.4600453E-7	39.375004	43
CGTTCGG	420	0.0	39.107143	45
GTTTTTT	32515	0.0	39.02122	2
ACGCCGA	110	0.0	38.863636	12
CCGCTCG	105	0.0	38.57143	19
CGACAGG	140	0.0	38.571426	2
TCTAGCG	35	6.2507625E-6	38.571426	1
CGTTTTC	580	0.0	38.40517	1
TGGGCGA	1125	0.0	38.2	6
AGGGCGA	2120	0.0	37.995285	6
TATACGG	190	0.0	37.894737	2