SRR1546571_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1546571_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1202898
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	6583	0.5472616963366803	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	4599	0.38232668106522744	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1867	0.1552085047942552	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AGCGTTG	25	3.8909136E-5	45.000004	1
CGGAATA	20	7.0334174E-4	45.000004	45
CTATGCG	50	2.1827873E-11	45.000004	1
TAATACG	50	2.1827873E-11	45.000004	1
AGGTACG	25	3.8909136E-5	45.000004	1
CAAACGT	20	7.0334174E-4	45.000004	45
GTCGACA	20	7.0334174E-4	45.000004	33
CACGGTT	20	7.0334174E-4	45.000004	4
TTTACGA	20	7.0334174E-4	45.000004	39
ACGTTAT	20	7.0334174E-4	45.000004	29
GCGAAGT	20	7.0334174E-4	45.000004	39
ACGCACT	20	7.0334174E-4	45.000004	35
ACCGCGT	20	7.0334174E-4	45.000004	38
GACGTAG	90	0.0	45.000004	1
TGGCGAT	25	3.8909136E-5	45.000004	6
CGCGAGA	80	0.0	45.000004	20
TAACGGC	20	7.0334174E-4	45.000004	35
CCAGACG	25	3.8909136E-5	45.000004	21
TGCGCGA	25	3.8909136E-5	45.000004	2
GTCAACG	20	7.0334174E-4	45.000004	1