##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546571_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1202898 Sequences flagged as poor quality 0 Sequence length 51 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.522743408003006 31.0 31.0 33.0 30.0 34.0 2 31.88116781306478 31.0 31.0 34.0 30.0 34.0 3 31.96547587576004 33.0 31.0 34.0 30.0 34.0 4 35.6980932714162 37.0 35.0 37.0 33.0 37.0 5 35.6305705055624 37.0 35.0 37.0 33.0 37.0 6 35.6731692961498 37.0 35.0 37.0 33.0 37.0 7 36.03051879710499 37.0 35.0 37.0 35.0 37.0 8 34.69609642712849 37.0 35.0 37.0 33.0 37.0 9 37.02439525213276 39.0 37.0 39.0 34.0 39.0 10 37.035853414005174 39.0 37.0 39.0 32.0 39.0 11 36.87101649516418 39.0 35.0 39.0 33.0 39.0 12 35.92599123117671 37.0 35.0 39.0 32.0 39.0 13 35.432527945012794 37.0 35.0 39.0 31.0 39.0 14 36.39870545964828 38.0 35.0 41.0 31.0 41.0 15 36.806055043736045 38.0 35.0 41.0 32.0 41.0 16 37.00104830168476 38.0 35.0 41.0 33.0 41.0 17 36.95552823265148 38.0 35.0 41.0 32.0 41.0 18 36.92803296705124 38.0 35.0 41.0 32.0 41.0 19 36.81983925486617 37.0 35.0 40.0 32.0 41.0 20 36.6396161603062 37.0 35.0 40.0 32.0 41.0 21 36.48309998021445 37.0 35.0 40.0 32.0 41.0 22 36.3745255208671 37.0 35.0 40.0 32.0 41.0 23 36.35410566814476 37.0 35.0 40.0 32.0 41.0 24 36.20237792398026 36.0 35.0 40.0 31.0 41.0 25 36.09333459694837 36.0 35.0 40.0 31.0 41.0 26 35.98486987259103 36.0 35.0 40.0 31.0 41.0 27 35.8586472003445 35.0 35.0 40.0 31.0 41.0 28 35.916174937525874 36.0 35.0 40.0 31.0 41.0 29 35.92929242545918 36.0 35.0 40.0 31.0 41.0 30 35.89198917946493 36.0 35.0 40.0 31.0 41.0 31 35.720425173206706 36.0 35.0 40.0 31.0 41.0 32 35.520750720343706 36.0 34.0 40.0 30.0 41.0 33 35.35282210129205 36.0 34.0 40.0 30.0 41.0 34 35.23375049256047 36.0 34.0 40.0 29.0 41.0 35 35.10879725463007 36.0 34.0 40.0 29.0 41.0 36 34.90659640302004 35.0 34.0 40.0 27.0 41.0 37 34.818927290593216 35.0 34.0 40.0 27.0 41.0 38 34.717138942786505 35.0 34.0 40.0 27.0 41.0 39 34.710536554221555 35.0 34.0 40.0 27.0 41.0 40 34.5143794403183 35.0 34.0 40.0 25.0 41.0 41 34.495840877613894 35.0 34.0 40.0 25.0 41.0 42 34.424715146255124 35.0 34.0 40.0 25.0 41.0 43 34.31243629966963 35.0 34.0 40.0 25.0 41.0 44 34.18739992917105 35.0 34.0 40.0 24.0 41.0 45 34.06440861984973 35.0 34.0 40.0 24.0 41.0 46 34.01837063491668 35.0 34.0 40.0 24.0 41.0 47 33.96290541675188 35.0 33.0 40.0 23.0 41.0 48 33.94903059112244 35.0 34.0 39.0 23.0 41.0 49 33.956260630577155 35.0 34.0 39.0 24.0 41.0 50 33.805372525351274 35.0 34.0 39.0 24.0 41.0 51 33.40958585017184 35.0 33.0 39.0 23.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 12 4.0 13 3.0 14 14.0 15 36.0 16 90.0 17 234.0 18 563.0 19 1053.0 20 1836.0 21 3022.0 22 4705.0 23 7096.0 24 10466.0 25 14806.0 26 19382.0 27 22111.0 28 23241.0 29 25906.0 30 29961.0 31 36686.0 32 46565.0 33 62054.0 34 117772.0 35 230900.0 36 80461.0 37 94571.0 38 135515.0 39 233599.0 40 246.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 32.84808853285981 23.523440890250047 29.15317840747927 14.475292169410872 2 30.626370648217886 26.89903882124669 29.441897816772496 13.032692713762927 3 27.745328365331055 25.638915352756424 31.96979295002569 14.645963331886827 4 24.464501562060956 28.66386011116487 31.58089879607415 15.290739530700026 5 22.600835648575355 32.44772208449927 30.35311389660636 14.598328370319013 6 20.22889721323005 40.93322958388824 27.66751628151348 11.17035692136823 7 84.37207477275712 5.559823027388855 7.879637342484566 2.188464857369453 8 82.3990063995451 7.0016742899231685 7.196537029739845 3.4027822807918877 9 80.39509584353786 5.8409773729775925 10.322737256192962 3.441189527291591 10 55.8343267675231 17.93236001722507 13.836584648074899 12.396728567176934 11 50.402527895133254 18.544631381879427 19.065540054102676 11.987300668884645 12 43.69913325984414 20.328822560183823 22.537821161894026 13.43422301807801 13 20.36889245804715 43.947699638705856 23.35842274241041 12.32498516083658 14 14.111504051050048 45.857753525236554 27.661530736604433 12.369211687108965 15 11.471795613593173 22.14285833046526 53.289056927520036 13.096289128421528 16 13.08573129226252 16.35350628232818 51.33776928717148 19.222993138237822 17 13.822867774325005 17.58312009829595 29.3985857487501 39.195426378628945 18 20.31809845888845 21.96320885062574 35.855076656541115 21.86361603394469 19 28.15267794941882 24.5795570364237 25.772592522391758 21.495172491765718 20 30.675169465740236 22.483203064598996 23.91100492311069 22.93062254655008 21 20.86585895063422 29.6799063594752 27.779662115989883 21.674572573900697 22 22.177192081124087 24.61397391965071 24.7871390591721 28.421694940053104 23 18.11974082590544 31.618391584323856 23.193238329434415 27.068629260336287 24 19.132628036624887 24.059230292177723 39.23815651867407 17.569985152523323 25 15.784879515968935 25.04867411867008 37.24904355980308 21.917402805557913 26 15.294813026540904 34.64142429366414 27.546724659946232 22.51703801984873 27 16.945908963187236 33.982848088532855 28.384700947212483 20.686542001067423 28 13.987802789596456 28.361922623530837 40.495952275255256 17.15432231161744 29 14.353752354729993 24.072614635654894 38.74468159395061 22.828951415664502 30 17.648545429454536 29.87984018595093 32.52644862656684 19.9451657580277 31 28.89671443464034 26.658286903794004 23.298401028183605 21.14659763338205 32 29.53841472843084 26.961970175359838 25.552124951575276 17.947490144634042 33 26.29807348586497 28.483711835916264 23.86470008263377 21.353514595584997 34 18.425502411675804 28.368656361553512 27.963883887079373 25.24195733969131 35 18.876080931217775 26.452700062681956 30.55462724187753 24.116591764222736 36 29.730866623770265 24.02007485256439 26.509396474181518 19.73966204948383 37 20.66110343520398 30.672509223558443 28.545063671233972 20.12132367000361 38 20.09746462293561 32.59794263520266 23.423848073568998 23.88074466829274 39 19.74340301505198 31.757222973186423 26.496344660977073 22.003029350784523 40 23.55212162627255 25.777497343914447 25.625531009279257 25.044850020533744 41 16.685537759643793 23.51670715222737 27.991068236874618 31.806686851254224 42 22.83385623718719 25.133053675373972 24.412709972084084 27.620380115354752 43 22.194816185578496 26.332157838819253 25.86719738498193 25.605828590620316 44 20.09887787659469 30.463597079719147 27.43241737869711 22.00510766498905 45 17.179760877480884 36.238899723833605 22.721461005006244 23.859878393679264 46 23.52793004893183 30.927559942738288 26.10587098823009 19.438639020099792 47 22.59485010366631 26.153505949797907 27.03479430508655 24.216849641449233 48 23.490187862977578 22.449284976781072 30.850911714875245 23.209615445366108 49 21.641319546628228 20.403974401819607 32.24787139059172 25.70683466096045 50 19.082748495716178 30.764786374239545 27.128983504835823 23.023481625208454 51 17.696762318999614 33.20788628794794 23.774501246157197 25.320850146895246 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 2455.0 1 2616.5 2 2778.0 3 6807.5 4 10837.0 5 7763.5 6 4690.0 7 5486.0 8 6282.0 9 7110.0 10 7938.0 11 8167.0 12 8396.0 13 8262.0 14 8128.0 15 7945.5 16 7763.0 17 7269.5 18 6776.0 19 6430.0 20 6084.0 21 5887.5 22 5691.0 23 5547.0 24 5403.0 25 5346.5 26 5635.0 27 5980.0 28 6172.0 29 6364.0 30 7151.0 31 7938.0 32 10849.0 33 13760.0 34 16614.0 35 19468.0 36 22309.0 37 25150.0 38 33192.5 39 41235.0 40 62780.5 41 84326.0 42 102494.5 43 120663.0 44 130841.0 45 141019.0 46 135851.0 47 130683.0 48 117647.0 49 104611.0 50 96991.5 51 89372.0 52 79096.0 53 68820.0 54 60320.0 55 51820.0 56 48061.0 57 44302.0 58 40460.0 59 36618.0 60 35304.0 61 33990.0 62 30956.0 63 27922.0 64 24491.5 65 21061.0 66 17186.0 67 13311.0 68 11064.5 69 8818.0 70 8059.5 71 7301.0 72 5799.0 73 4297.0 74 3397.0 75 2031.5 76 1566.0 77 1188.5 78 811.0 79 605.0 80 399.0 81 303.5 82 208.0 83 124.5 84 41.0 85 32.0 86 23.0 87 15.5 88 8.0 89 6.0 90 4.0 91 2.0 92 0.0 93 0.0 94 0.0 95 0.5 96 1.0 97 0.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 1202898.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 22.477509669033466 #Duplication Level Percentage of deduplicated Percentage of total 1 81.69371388764867 18.362712438088764 2 7.3888972080341535 3.3216801687416413 3 2.419810428515093 1.6317393691252804 4 1.1968642983614453 1.0761011535576137 5 0.743582789250473 0.8356944667552191 6 0.5256083172565934 0.7088619619955693 7 0.3677550249746782 0.5786351990792782 8 0.3021995618932841 0.5434154859547177 9 0.24610553846033859 0.49786556583104535 >10 2.5249920487002644 13.87061005865874 >50 1.631447125418 27.233717014811493 >100 0.9536810206709326 29.460560851663793 >500 0.003816250582916897 0.6670237977153122 >1k 0.0011448751748750691 0.6466939828929704 >5k 3.816250582916897E-4 0.5646884851285879 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 6583 0.5472616963366803 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC 4599 0.38232668106522744 No Hit AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 1867 0.1552085047942552 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 8.313256818117579E-5 0.0 0.0 0.07947473518120406 0.0 2 8.313256818117579E-5 0.0 0.0 0.2641121691115955 0.0 3 8.313256818117579E-5 0.0 0.0 0.41433271981498015 0.0 4 8.313256818117579E-5 0.0 0.0 0.7848545761984806 0.0 5 8.313256818117579E-5 0.0 0.0 1.2903005907400296 0.0 6 8.313256818117579E-5 0.0 0.0 2.118633500097265 0.0 7 8.313256818117579E-5 0.0 0.0 2.5419445372758123 0.0 8 8.313256818117579E-5 0.0 0.0 3.739219784221106 0.0 9 8.313256818117579E-5 0.0 0.0 4.3569778983754235 0.0 10 8.313256818117579E-5 0.0 0.0 5.301114475209037 0.0 11 8.313256818117579E-5 0.0 0.0 5.971079842181132 0.0 12 8.313256818117579E-5 0.0 0.0 6.5763680711082735 8.313256818117579E-5 13 8.313256818117579E-5 0.0 0.0 6.826763366469975 8.313256818117579E-5 14 8.313256818117579E-5 0.0 0.0 6.918458589173812 8.313256818117579E-5 15 8.313256818117579E-5 0.0 0.0 7.029440567695682 8.313256818117579E-5 16 8.313256818117579E-5 0.0 0.0 7.281249116716463 8.313256818117579E-5 17 8.313256818117579E-5 0.0 0.0 7.5320600749190705 8.313256818117579E-5 18 8.313256818117579E-5 0.0 0.0 7.971581962892947 8.313256818117579E-5 19 8.313256818117579E-5 0.0 0.0 8.135602519914407 8.313256818117579E-5 20 8.313256818117579E-5 0.0 0.0 8.324562847390219 8.313256818117579E-5 21 8.313256818117579E-5 0.0 0.0 8.540707524661276 8.313256818117579E-5 22 8.313256818117579E-5 0.0 0.0 8.739560627750649 8.313256818117579E-5 23 8.313256818117579E-5 0.0 0.0 8.975158325976102 8.313256818117579E-5 24 8.313256818117579E-5 0.0 0.0 9.150069249429295 8.313256818117579E-5 25 8.313256818117579E-5 0.0 0.0 9.285907865837336 8.313256818117579E-5 26 8.313256818117579E-5 0.0 0.0 9.432470583540749 8.313256818117579E-5 27 8.313256818117579E-5 0.0 0.0 9.569306790766964 8.313256818117579E-5 28 8.313256818117579E-5 0.0 0.0 9.700074320515954 8.313256818117579E-5 29 8.313256818117579E-5 0.0 0.0 9.835912936923995 8.313256818117579E-5 30 8.313256818117579E-5 0.0 0.0 10.043162429399667 8.313256818117579E-5 31 1.6626513636235158E-4 0.0 0.0 10.22505648858008 8.313256818117579E-5 32 1.6626513636235158E-4 0.0 0.0 10.365633661374448 8.313256818117579E-5 33 1.6626513636235158E-4 0.0 0.0 10.51493975382784 8.313256818117579E-5 34 1.6626513636235158E-4 0.0 0.0 10.673806091622065 8.313256818117579E-5 35 1.6626513636235158E-4 0.0 0.0 10.889784503756761 8.313256818117579E-5 36 1.6626513636235158E-4 0.0 0.0 11.045824334232828 8.313256818117579E-5 37 1.6626513636235158E-4 0.0 0.0 11.206270190822497 8.313256818117579E-5 38 1.6626513636235158E-4 0.0 0.0 11.355908813548613 8.313256818117579E-5 39 1.6626513636235158E-4 0.0 0.0 11.5034691220702 8.313256818117579E-5 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position AGCGTTG 25 3.8909136E-5 45.000004 1 CGGAATA 20 7.0334174E-4 45.000004 45 CTATGCG 50 2.1827873E-11 45.000004 1 TAATACG 50 2.1827873E-11 45.000004 1 AGGTACG 25 3.8909136E-5 45.000004 1 CAAACGT 20 7.0334174E-4 45.000004 45 GTCGACA 20 7.0334174E-4 45.000004 33 CACGGTT 20 7.0334174E-4 45.000004 4 TTTACGA 20 7.0334174E-4 45.000004 39 ACGTTAT 20 7.0334174E-4 45.000004 29 GCGAAGT 20 7.0334174E-4 45.000004 39 ACGCACT 20 7.0334174E-4 45.000004 35 ACCGCGT 20 7.0334174E-4 45.000004 38 GACGTAG 90 0.0 45.000004 1 TGGCGAT 25 3.8909136E-5 45.000004 6 CGCGAGA 80 0.0 45.000004 20 TAACGGC 20 7.0334174E-4 45.000004 35 CCAGACG 25 3.8909136E-5 45.000004 21 TGCGCGA 25 3.8909136E-5 45.000004 2 GTCAACG 20 7.0334174E-4 45.000004 1 >>END_MODULE