SRR1546570_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1546570_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1296591
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Sequence	Count	Percentage	Possible Source
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	5693	0.43907446527085253	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	5631	0.4342926952292589	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1539	0.11869587248407555	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACTATCG	25	3.8910825E-5	45.000004	31
TCGATAG	50	2.1827873E-11	45.000004	1
TATTCGA	25	3.8910825E-5	45.000004	29
CGTCGAG	25	3.8910825E-5	45.000004	13
ATACGAT	25	3.8910825E-5	45.000004	14
CACAACG	50	2.1827873E-11	45.000004	12
TACACCG	25	3.8910825E-5	45.000004	42
TACGTTC	25	3.8910825E-5	45.000004	20
AGTCGGT	25	3.8910825E-5	45.000004	16
CTAGACG	20	7.033621E-4	45.0	1
CGAACTA	20	7.033621E-4	45.0	43
CGTATAT	20	7.033621E-4	45.0	27
CCCTAGT	20	7.033621E-4	45.0	13
TCACACG	20	7.033621E-4	45.0	43
GTTTAGT	20	7.033621E-4	45.0	24
TAGCGAT	40	6.8157533E-9	45.0	12
CGACCGT	35	1.2120836E-7	45.0	8
CCGCTTC	20	7.033621E-4	45.0	16
TACGGAT	20	7.033621E-4	45.0	27
TCTAGCG	35	1.2120836E-7	45.0	1