##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546570_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1296591 Sequences flagged as poor quality 0 Sequence length 51 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.538527569603676 31.0 31.0 33.0 30.0 34.0 2 31.891575678066562 31.0 31.0 34.0 30.0 34.0 3 31.975101631894713 33.0 31.0 34.0 30.0 34.0 4 35.71995332375437 37.0 35.0 37.0 33.0 37.0 5 35.64205520476388 37.0 35.0 37.0 33.0 37.0 6 35.70056478874217 37.0 35.0 37.0 33.0 37.0 7 36.04766190726297 37.0 35.0 37.0 35.0 37.0 8 34.739334917487476 37.0 35.0 37.0 33.0 37.0 9 37.06520946080915 39.0 37.0 39.0 34.0 39.0 10 37.063285183994026 39.0 37.0 39.0 32.0 39.0 11 36.9036666149927 39.0 37.0 39.0 33.0 39.0 12 35.858799729444364 37.0 35.0 39.0 32.0 39.0 13 35.3173383125442 37.0 35.0 39.0 30.0 39.0 14 36.2429077480871 38.0 35.0 41.0 31.0 41.0 15 36.676982178651556 38.0 35.0 41.0 32.0 41.0 16 36.89737550237508 38.0 35.0 41.0 33.0 41.0 17 36.851739677353926 38.0 35.0 41.0 32.0 41.0 18 36.81907864546337 38.0 35.0 40.0 32.0 41.0 19 36.727710588767 37.0 35.0 40.0 32.0 41.0 20 36.5324084464569 36.0 35.0 40.0 32.0 41.0 21 36.38108856223744 36.0 35.0 40.0 32.0 41.0 22 36.27829670266105 36.0 35.0 40.0 32.0 41.0 23 36.26505197089907 36.0 35.0 40.0 32.0 41.0 24 36.12747813304272 35.0 35.0 40.0 31.0 41.0 25 36.02525854336487 35.0 35.0 40.0 31.0 41.0 26 35.911184020250026 35.0 35.0 40.0 31.0 41.0 27 35.810152160550246 35.0 35.0 40.0 31.0 41.0 28 35.87065466288136 36.0 35.0 40.0 31.0 41.0 29 35.8978814444956 36.0 35.0 40.0 31.0 41.0 30 35.87323141993119 36.0 35.0 40.0 31.0 41.0 31 35.67738785785186 36.0 35.0 40.0 31.0 41.0 32 35.452458022614685 35.0 34.0 40.0 30.0 41.0 33 35.29862308160399 35.0 34.0 40.0 30.0 41.0 34 35.15640938430083 35.0 34.0 40.0 29.0 41.0 35 35.040206202264244 35.0 34.0 40.0 29.0 41.0 36 34.839293963940825 35.0 34.0 40.0 27.0 41.0 37 34.71921137814469 35.0 34.0 40.0 27.0 41.0 38 34.66577895419604 35.0 34.0 40.0 27.0 41.0 39 34.65291367902446 35.0 34.0 40.0 27.0 41.0 40 34.43921251959947 35.0 34.0 40.0 25.0 41.0 41 34.43961665629331 35.0 34.0 40.0 25.0 41.0 42 34.39373325898452 35.0 34.0 40.0 25.0 41.0 43 34.29212373061359 35.0 34.0 40.0 26.0 41.0 44 34.16080938399233 35.0 34.0 40.0 25.0 41.0 45 34.02982667626106 35.0 34.0 40.0 24.0 41.0 46 34.002963926172555 35.0 34.0 40.0 24.0 41.0 47 33.956673307157 35.0 34.0 39.0 24.0 41.0 48 33.950774762434726 35.0 34.0 39.0 24.0 41.0 49 33.96197181686438 35.0 34.0 39.0 24.0 41.0 50 33.79731773550796 35.0 34.0 39.0 24.0 41.0 51 33.39938191765946 35.0 33.0 39.0 24.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 2.0 11 2.0 12 3.0 13 6.0 14 10.0 15 24.0 16 83.0 17 251.0 18 568.0 19 1061.0 20 1862.0 21 3148.0 22 4898.0 23 7313.0 24 11363.0 25 16140.0 26 20577.0 27 23789.0 28 24801.0 29 27379.0 30 32070.0 31 40051.0 32 50656.0 33 68419.0 34 133558.0 35 263162.0 36 83191.0 37 96642.0 38 141280.0 39 244014.0 40 268.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 33.51349808844886 23.822855472543 28.4523801260382 14.211266312969933 2 31.057056542888233 26.234795706587505 29.75548958769573 12.952658162828525 3 28.14395595835541 25.612625723917564 32.367107283638404 13.876311034088621 4 25.618487248484676 27.878953347663217 31.259819017716456 15.242740386135644 5 22.847451509381138 32.829396471207964 29.71646417413047 14.60668784528043 6 20.18007220472763 40.67319609653314 27.740821893719765 11.405909805019471 7 84.64450239127065 5.807691091485287 7.805622590315682 1.7421839269283836 8 82.91735790237631 7.143887316817716 6.8363115276906905 3.1024432531152843 9 81.05362446600354 5.503585941904579 10.013951970976198 3.4288376211156795 10 56.90090398591383 18.402333503780298 13.339056032318593 11.357706477987275 11 52.89995071691844 18.61681902774275 17.849884813329727 10.633345442009084 12 46.71797043169357 19.876198431116674 21.548738191148946 11.85709294604081 13 21.232292989847995 44.53655778884783 22.679935307278857 11.551213914025316 14 14.06966421948016 47.81469252833006 25.84508144819762 12.27056180399216 15 11.399199901896589 22.705849415891365 53.611894575853135 12.283056106358906 16 12.611918484703349 16.232104032806028 53.3700295621364 17.78594792035422 17 14.1201813062099 16.819876121305793 29.26227314550232 39.79766942698198 18 19.579034560628603 21.97161633853698 36.6519588675226 21.797390233311813 19 29.148590419029595 23.659504037896298 26.302511740402334 20.889393802671776 20 31.258816388514187 22.129106248616566 23.910469839756715 22.701607523112532 21 21.203525244275177 29.677207384595448 28.024180331345818 21.095087039783557 22 22.308654001146085 25.501719509081894 24.13467315444886 28.05495333532317 23 18.013930375885685 32.59092497171429 22.845677626946355 26.549467025453673 24 18.798526289323313 23.613305969268644 40.39153441601862 17.196633325389424 25 14.90007257492918 24.2106415978516 38.64780798262521 22.241477844594016 26 14.823410003617177 34.977028222469535 28.85489718808784 21.344664585825445 27 17.31795145886405 35.20701593640555 28.228099686022812 19.246932918707596 28 13.585625690753677 29.414595658924053 40.6276150304915 16.372163619830772 29 13.760545923888104 24.186501371673874 39.72648275362084 22.32646995081718 30 17.133313434999934 30.353210842894946 33.12632896572627 19.387146756378844 31 28.761806922923267 26.052085815804677 24.338206882509596 20.847900378762464 32 30.24739489939387 26.93493939106472 26.11609983410343 16.701565875437975 33 28.992180263475532 26.728012148780916 24.19868717274761 20.08112041499594 34 19.46967085225796 27.999268851935575 28.488706153289666 24.0423541425168 35 19.168882091577068 25.34800873984163 31.359464935357412 24.123644233223892 36 33.397887228894845 22.591086934893116 25.502413636991157 18.50861219922088 37 20.681772432478706 30.661635010577736 29.01500935915798 19.64158319778558 38 22.491363891928913 31.675370259395603 22.669677639286405 23.163588209389083 39 20.314038891215503 30.47738261332988 26.629137484372485 22.57944101108214 40 24.549761644188493 24.018599542955336 25.368601201149783 26.06303761170639 41 16.788948866681938 23.038645185721634 27.071374087896643 33.10103185969978 42 22.873211367347142 25.104986846276116 24.137603916732417 27.88419786964432 43 23.235083384043236 25.879710718337552 25.393821181853028 25.49138471576619 44 20.999683014921438 30.840565760521244 27.277838578240942 20.881912646316376 45 16.90255446783141 37.331510090691665 21.984419142196728 23.781516299280188 46 23.310820451476218 32.18254638509754 25.960538057105133 18.546095106321115 47 23.451574166410225 25.506269903153733 26.77513572128759 24.267020209148452 48 24.970171781232477 21.755973934725752 30.38691460915586 22.886939674885912 49 22.62795283940734 20.24339209511712 32.42124926056096 24.707405804914583 50 19.256265082821027 31.836176558375 26.17417520251182 22.733383156292152 51 18.377576275016562 33.83464793446815 22.954270082084484 24.8335057084308 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 1955.0 1 2243.0 2 2531.0 3 6091.5 4 9652.0 5 7377.5 6 5103.0 7 5738.0 8 6373.0 9 7223.5 10 8074.0 11 8414.5 12 8755.0 13 8691.5 14 8628.0 15 8512.0 16 8396.0 17 7818.0 18 7240.0 19 6763.0 20 6286.0 21 5977.0 22 5668.0 23 5477.5 24 5287.0 25 5597.0 26 6076.0 27 6245.0 28 6725.5 29 7206.0 30 8836.0 31 10466.0 32 12325.0 33 14184.0 34 17944.5 35 21705.0 36 22790.5 37 23876.0 38 31934.5 39 39993.0 40 62341.0 41 84689.0 42 108883.0 43 133077.0 44 134066.5 45 135056.0 46 132820.5 47 130585.0 48 125862.5 49 121140.0 50 120120.0 51 119100.0 52 110484.0 53 101868.0 54 85237.5 55 68607.0 56 58345.0 57 48083.0 58 42994.0 59 37905.0 60 33744.5 61 29584.0 62 26601.0 63 23618.0 64 20450.0 65 17282.0 66 14449.0 67 11616.0 68 9827.0 69 8038.0 70 6694.5 71 5351.0 72 4345.0 73 3339.0 74 2806.0 75 1637.0 76 1001.0 77 748.0 78 495.0 79 370.0 80 245.0 81 138.0 82 31.0 83 31.0 84 31.0 85 36.5 86 42.0 87 22.0 88 2.0 89 2.5 90 3.0 91 1.5 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 1296591.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 21.304736079395855 #Duplication Level Percentage of deduplicated Percentage of total 1 82.18834449595377 17.510009882887623 2 7.359056352553367 3.1356550676910198 3 2.425840329545529 1.5504566397516648 4 1.1582933344122752 0.9870853516870771 5 0.7023417672368519 0.7481602994258804 6 0.4859011302346197 0.6211197204197237 7 0.34679501624528697 0.5171863406328947 8 0.278478428460769 0.4746327537729282 9 0.22042062008826385 0.42264028236935175 >10 2.1963301742124814 11.041154787087718 >50 1.3120052377721938 21.05669283548321 >100 1.3202192704319526 40.25284058612767 >500 0.004480382139474951 0.578526900104945 >1k 7.467303565791587E-4 0.2030770213072906 >5k 7.467303565791587E-4 0.9007615312509827 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC 5693 0.43907446527085253 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 5631 0.4342926952292589 No Hit AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 1539 0.11869587248407555 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.08344959975813498 0.0 2 0.0 0.0 0.0 0.2597580887110893 0.0 3 0.0 0.0 0.0 0.3941875271384731 0.0 4 0.0 0.0 0.0 0.6878036327569758 0.0 5 0.0 0.0 0.0 1.0883925617253243 0.0 6 0.0 0.0 0.0 1.750976213779056 0.0 7 0.0 0.0 0.0 2.110765846747355 0.0 8 0.0 0.0 0.0 3.188206612570965 0.0 9 0.0 0.0 0.0 3.7538437332975474 0.0 10 0.0 0.0 0.0 4.635540428708822 0.0 11 0.0 0.0 0.0 5.222541263976073 0.0 12 0.0 0.0 0.0 5.756865503462541 0.0 13 0.0 0.0 0.0 5.985619212226523 0.0 14 0.0 0.0 0.0 6.069762939893922 0.0 15 0.0 0.0 0.0 6.166940847190825 0.0 16 0.0 0.0 0.0 6.38659376781113 0.0 17 0.0 0.0 0.0 6.611028458473027 0.0 18 0.0 0.0 0.0 7.024574441747629 0.0 19 0.0 0.0 0.0 7.165096780711882 0.0 20 0.0 0.0 0.0 7.351508687010784 0.0 21 0.0 0.0 0.0 7.552111652787965 0.0 22 0.0 0.0 0.0 7.734667292924292 0.0 23 7.712532325151108E-5 0.0 0.0 7.964192254920788 0.0 24 7.712532325151108E-5 0.0 0.0 8.121219413060865 0.0 25 7.712532325151108E-5 0.0 0.0 8.243925802354019 0.0 26 7.712532325151108E-5 0.0 0.0 8.368328948758707 0.0 27 7.712532325151108E-5 0.0 0.0 8.496896862618975 0.0 28 7.712532325151108E-5 0.0 0.0 8.607340325515139 0.0 29 7.712532325151108E-5 0.0 0.0 8.731743471919827 0.0 30 7.712532325151108E-5 0.0 0.0 8.928875798150688 0.0 31 7.712532325151108E-5 0.0 0.0 9.09222723279739 0.0 32 7.712532325151108E-5 0.0 0.0 9.224574287496983 0.0 33 7.712532325151108E-5 0.0 0.0 9.35761547010584 0.0 34 7.712532325151108E-5 0.0 0.0 9.493818790968009 0.0 35 7.712532325151108E-5 0.0 0.0 9.678842441448383 0.0 36 7.712532325151108E-5 0.0 0.0 9.829005445819075 0.0 37 7.712532325151108E-5 0.0 0.0 9.974849432087682 0.0 38 7.712532325151108E-5 0.0 0.0 10.113983515233409 0.0 39 7.712532325151108E-5 0.0 0.0 10.249261332216559 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position ACTATCG 25 3.8910825E-5 45.000004 31 TCGATAG 50 2.1827873E-11 45.000004 1 TATTCGA 25 3.8910825E-5 45.000004 29 CGTCGAG 25 3.8910825E-5 45.000004 13 ATACGAT 25 3.8910825E-5 45.000004 14 CACAACG 50 2.1827873E-11 45.000004 12 TACACCG 25 3.8910825E-5 45.000004 42 TACGTTC 25 3.8910825E-5 45.000004 20 AGTCGGT 25 3.8910825E-5 45.000004 16 CTAGACG 20 7.033621E-4 45.0 1 CGAACTA 20 7.033621E-4 45.0 43 CGTATAT 20 7.033621E-4 45.0 27 CCCTAGT 20 7.033621E-4 45.0 13 TCACACG 20 7.033621E-4 45.0 43 GTTTAGT 20 7.033621E-4 45.0 24 TAGCGAT 40 6.8157533E-9 45.0 12 CGACCGT 35 1.2120836E-7 45.0 8 CCGCTTC 20 7.033621E-4 45.0 16 TACGGAT 20 7.033621E-4 45.0 27 TCTAGCG 35 1.2120836E-7 45.0 1 >>END_MODULE