SRR1546569_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1546569_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1801954
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACCTGTCTCTTATACACATCTGACGCGATAAGTGTCGTATGCCG	22459	1.246369219192055	No Hit
GAATCTGTCTCTTATACACATCTGACGCGATAAGTGTCGTATGCCGTCTTC	18064	1.0024673215853457	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGATAAGTGTCGTATGC	14083	0.7815404832753777	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	11739	0.6514594712184661	No Hit
GAACTGTCTCTTATACACATCTGACGCGATAAGTGTCGTATGCCGTCTTCT	5460	0.30300440521789124	No Hit
GAATGACTGTCTCTTATACACATCTGACGCGATAAGTGTCGTATGCCGTCT	5345	0.2966224443021298	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCGATAAGTGTCGTATGCCGTC	5266	0.29223831462956323	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	5237	0.2906289505725451	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCGATAAGTGT	4232	0.23485616170002122	No Hit
GCTGTCTCTTATACACATCTGACGCGATAAGTGTCGTATGCCGTCTTCTGC	4148	0.2301945554658998	TruSeq Adapter, Index 15 (95% over 22bp)
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCGATAAGTGTCGTA	2671	0.14822797918259845	No Hit
CTGTCTCTTATACACATCTGACGCGATAAGTGTCGTATGCCGTCTTCTGCT	2366	0.13130190892775287	TruSeq Adapter, Index 21 (95% over 22bp)
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2249	0.12480895738736948	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TGCCAAT	20	7.0343557E-4	45.0	41
TTCGTAA	20	7.0343557E-4	45.0	21
CGTTCCA	20	7.0343557E-4	45.0	22
TCTAGCG	40	6.8193913E-9	45.0	1
TATCTCG	55	1.8189894E-12	45.0	1
ACTACGC	20	7.0343557E-4	45.0	44
GTATATC	20	7.0343557E-4	45.0	21
AACTACG	25	3.8916907E-5	45.0	26
TAAGCCA	20	7.0343557E-4	45.0	37
ATGCACG	35	1.2124474E-7	45.0	1
TCGAATC	25	3.8916907E-5	45.0	20
TACGTAG	25	3.8916907E-5	45.0	1
GTACGCA	30	2.1661908E-6	44.999996	37
CGACGGT	165	0.0	43.636364	28
GATGAAT	7285	0.0	43.5175	20
CGATGAA	7050	0.0	43.053192	19
TGAATGA	7310	0.0	42.876194	22
CGTCGAA	700	0.0	42.75	42
ACGTAAG	100	0.0	42.75	1
GTGTACG	85	0.0	42.35294	1