##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546569_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1801954 Sequences flagged as poor quality 0 Sequence length 51 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.268399748273264 31.0 31.0 33.0 30.0 34.0 2 31.606938911870113 31.0 31.0 34.0 30.0 34.0 3 31.708591340289487 31.0 31.0 34.0 30.0 34.0 4 35.49392825788006 37.0 35.0 37.0 33.0 37.0 5 35.34051035709014 37.0 35.0 37.0 33.0 37.0 6 35.41998630375692 37.0 35.0 37.0 33.0 37.0 7 35.73772637925274 37.0 35.0 37.0 35.0 37.0 8 34.371661540749656 37.0 35.0 37.0 32.0 37.0 9 36.59586149257972 39.0 37.0 39.0 32.0 39.0 10 36.626387799022616 39.0 35.0 39.0 32.0 39.0 11 36.51203193866214 39.0 35.0 39.0 32.0 39.0 12 35.825513858844346 37.0 35.0 39.0 31.0 39.0 13 35.36316243366923 37.0 35.0 39.0 30.0 39.0 14 36.39547513421541 38.0 35.0 41.0 31.0 41.0 15 36.638246592310345 38.0 35.0 41.0 31.0 41.0 16 36.90517959947923 38.0 35.0 41.0 32.0 41.0 17 36.608650387301786 38.0 35.0 41.0 31.0 41.0 18 36.64241484521803 38.0 35.0 40.0 31.0 41.0 19 36.577384883298905 37.0 35.0 40.0 31.0 41.0 20 36.00371430125297 37.0 35.0 40.0 30.0 41.0 21 36.19483238750823 37.0 35.0 40.0 31.0 41.0 22 36.03703202190511 37.0 35.0 40.0 30.0 41.0 23 35.72353012341048 37.0 34.0 40.0 30.0 41.0 24 35.78477530502998 36.0 34.0 40.0 30.0 41.0 25 35.94989494737379 36.0 35.0 40.0 30.0 41.0 26 35.59949643553609 36.0 34.0 40.0 30.0 41.0 27 35.273736177505086 36.0 34.0 40.0 29.0 41.0 28 35.463440243202655 36.0 34.0 40.0 29.0 41.0 29 35.36729794434264 36.0 34.0 40.0 29.0 41.0 30 35.49468354908061 36.0 34.0 40.0 29.0 41.0 31 35.37768500194789 36.0 34.0 40.0 29.0 41.0 32 34.868951149696386 36.0 34.0 40.0 26.0 41.0 33 34.634330843073684 36.0 34.0 40.0 24.0 41.0 34 34.33529490763915 36.0 34.0 40.0 23.0 41.0 35 34.073670582045935 36.0 33.0 40.0 22.0 41.0 36 33.90070112777574 36.0 33.0 40.0 21.0 41.0 37 33.69190001520572 36.0 33.0 40.0 19.0 41.0 38 33.669813435859076 35.0 33.0 40.0 20.0 41.0 39 33.62619911496076 36.0 33.0 40.0 18.0 41.0 40 33.4696584929471 35.0 33.0 40.0 18.0 41.0 41 33.47235612007854 35.0 33.0 40.0 18.0 41.0 42 33.34234669697451 35.0 33.0 40.0 18.0 41.0 43 33.184561870058836 35.0 33.0 40.0 17.0 41.0 44 33.231598031914245 35.0 33.0 40.0 18.0 41.0 45 33.20749364301197 35.0 33.0 40.0 18.0 41.0 46 33.20012053581834 35.0 33.0 40.0 18.0 41.0 47 33.02723099479787 35.0 32.0 40.0 18.0 41.0 48 33.029448587477816 35.0 32.0 39.0 18.0 41.0 49 32.998678656613876 35.0 32.0 39.0 18.0 41.0 50 32.768566789163316 35.0 32.0 39.0 17.0 41.0 51 32.471989851017284 35.0 32.0 39.0 17.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 2.0 12 2.0 13 14.0 14 22.0 15 52.0 16 191.0 17 558.0 18 1504.0 19 3361.0 20 7759.0 21 14702.0 22 20219.0 23 23591.0 24 26819.0 25 31812.0 26 36248.0 27 38440.0 28 38651.0 29 41613.0 30 48420.0 31 58715.0 32 73403.0 33 94217.0 34 159085.0 35 277236.0 36 121840.0 37 143475.0 38 201552.0 39 338138.0 40 313.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 39.59684875418573 22.00250394849147 24.50828378526866 13.892363512054137 2 27.85426265043392 33.918956865713554 26.165817773372684 12.060962710479846 3 25.74138962481839 31.955477220839157 29.816243921875916 12.486889232466533 4 22.54580305601586 25.483946871007806 37.417769820983224 14.552480251993114 5 28.91955066555528 29.313289906401607 27.285269213309554 14.48189021473356 6 18.350745912492773 44.80175409583153 26.38835397573967 10.459146015936033 7 75.91725426953185 4.856561266269838 16.86741170973288 2.35877275446543 8 72.65440738220843 13.746410840676287 9.021317969271134 4.577863807844151 9 70.68543370141525 5.615015699623853 11.576488634005086 12.12306196495582 10 50.627041533801645 19.145105812911982 16.263567216477224 13.964285436809154 11 45.236948334974144 19.340060845060417 22.158057308899117 13.264933511066321 12 36.44049737118706 18.043912330725423 25.2987590138261 20.21683128426142 13 25.000416214842332 34.57230317755059 27.831121105200246 12.596159502406831 14 14.927573067902955 44.15295839960399 26.542297972090296 14.377170560402764 15 12.327673181446364 22.133694866794603 47.873808099429844 17.664823852329196 16 13.73275899384779 18.525278669710772 43.00564831288701 24.73631402355443 17 13.55750479756975 23.062852880817157 30.12096868177545 33.258673639837646 18 18.2097323239106 21.71736903383771 34.637843141389844 25.435055500861843 19 24.484254315038008 24.9577403196752 25.441381966465293 25.116623398821503 20 31.07726390351807 22.07475884512035 26.34778690244035 20.500190348921226 21 19.959000063264657 32.51764473454927 27.472898864232935 20.050456337953133 22 19.64850379088478 22.797640783283036 30.157262616026827 27.396592809805355 23 21.277180216587105 30.15082515979875 24.44757191360046 24.124422710013686 24 19.03605752422093 26.758729690103078 34.93918268723841 19.266030098437582 25 16.171444998041014 30.12390993332793 32.54600283914017 21.158642229490876 26 15.745795952615882 29.700425205082926 32.57896705465289 21.974811787648296 27 21.955776895525638 30.8745395276461 26.827987839867166 20.3416957369611 28 15.114758756327854 31.024487861510337 36.59371992847764 17.267033453684167 29 17.643735633651026 22.950308387450512 37.36954439458499 22.036411584313473 30 17.69257150848468 34.08344497140327 30.31542425611309 17.908559263998967 31 25.991839969277798 25.744330876370874 23.775745662763867 24.488083491587464 32 31.555633495638624 27.72551352587247 24.63553453639771 16.083318442091198 33 28.459605517121965 28.089451784007807 22.818729001961206 20.632213696909023 34 21.95261366272391 26.352947966485267 27.01794829390761 24.676490076883205 35 22.851859703410852 27.018669732967656 28.599176227584056 21.530294336037432 36 29.063283524440692 26.763280305712577 26.954572647248487 17.218863522598244 37 20.85197513366046 31.213338409304566 29.077934286890788 18.85675217014419 38 20.228651785783654 30.77675678735417 24.54740798044789 24.447183446414282 39 23.35087355171109 30.21608764707645 25.864589218148744 20.568449583063718 40 22.02020695311867 25.293209482595003 27.749376510166186 24.93720705412014 41 19.986525738170897 22.475823467191727 26.43347166464849 31.10417912998889 42 23.03682557934331 23.887846193632022 27.240096029088424 25.835232197936243 43 25.46596638981905 24.700630537738476 25.061905020882886 24.771498051559586 44 21.877195533293303 27.52251167343894 28.030959724832044 22.56933306843571 45 17.52713998248568 31.562181942491318 26.11859126259605 24.792086812426955 46 25.5820625831736 30.288398039017643 25.254640240538883 18.874899137269875 47 21.09188136878078 27.539215762444545 29.177770353738218 22.191132515036454 48 24.167653558303932 23.090212069786464 29.252078576922607 23.490055794986997 49 21.754606388398372 20.450411053778286 34.1903844382265 23.604598119596837 50 21.541781865685806 27.487438636058414 28.382134061135854 22.588645437119926 51 20.096406456546614 29.239869608214192 24.604901124002055 26.058822811237135 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 2923.0 1 3434.5 2 3946.0 3 11330.0 4 18714.0 5 13161.0 6 7608.0 7 8357.5 8 9107.0 9 10011.0 10 10915.0 11 11518.5 12 12122.0 13 11985.5 14 11849.0 15 11238.5 16 10628.0 17 10243.0 18 9858.0 19 9851.5 20 9845.0 21 8973.0 22 8101.0 23 8029.0 24 7957.0 25 8088.0 26 8981.5 27 9744.0 28 11478.0 29 13212.0 30 15543.0 31 17874.0 32 20894.0 33 23914.0 34 27307.5 35 30701.0 36 30652.5 37 30604.0 38 40239.0 39 49874.0 40 75698.5 41 101523.0 42 129969.5 43 158416.0 44 208764.0 45 259112.0 46 224682.5 47 190253.0 48 171975.0 49 153697.0 50 141477.0 51 129257.0 52 119232.0 53 109207.0 54 100710.0 55 92213.0 56 86005.5 57 79798.0 58 71203.0 59 62608.0 60 54543.0 61 46478.0 62 40127.5 63 33777.0 64 30120.0 65 26463.0 66 21687.5 67 16912.0 68 14201.0 69 11490.0 70 10032.0 71 8574.0 72 7173.5 73 5773.0 74 4617.0 75 2847.0 76 2233.0 77 1695.5 78 1158.0 79 1140.5 80 1123.0 81 737.5 82 352.0 83 277.5 84 203.0 85 163.5 86 124.0 87 69.5 88 15.0 89 15.0 90 15.0 91 9.5 92 4.0 93 2.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 1801954.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 23.234907993205518 #Duplication Level Percentage of deduplicated Percentage of total 1 81.91950309479031 19.033921172565677 2 7.587100607501847 3.525711691009982 3 2.5217088981743503 1.7577502270418606 4 1.2669699720956606 1.1775172292718734 5 0.7743612616418054 0.8996106333874947 6 0.49418838169292556 0.6889452947967752 7 0.3752956047701379 0.6103971192962003 8 0.3011835575279032 0.5598377798581721 9 0.23981038765456467 0.5014775063671882 >10 2.402273360758763 13.248618849770152 >50 1.2412818147465863 21.17716441611743 >100 0.8635264287565095 29.00056598321567 >500 0.007136582053275074 1.0939974108709414 >1k 0.0036913355447974524 1.712612264172186 >5k 9.843561452793205E-4 1.2183607814162971 >10k+ 9.843561452793205E-4 3.7935116408421363 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source GAATGATACCTGTCTCTTATACACATCTGACGCGATAAGTGTCGTATGCCG 22459 1.246369219192055 No Hit GAATCTGTCTCTTATACACATCTGACGCGATAAGTGTCGTATGCCGTCTTC 18064 1.0024673215853457 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCGATAAGTGTCGTATGC 14083 0.7815404832753777 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 11739 0.6514594712184661 No Hit GAACTGTCTCTTATACACATCTGACGCGATAAGTGTCGTATGCCGTCTTCT 5460 0.30300440521789124 No Hit GAATGACTGTCTCTTATACACATCTGACGCGATAAGTGTCGTATGCCGTCT 5345 0.2966224443021298 No Hit GAATGATCTGTCTCTTATACACATCTGACGCGATAAGTGTCGTATGCCGTC 5266 0.29223831462956323 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC 5237 0.2906289505725451 No Hit GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCGATAAGTGT 4232 0.23485616170002122 No Hit GCTGTCTCTTATACACATCTGACGCGATAAGTGTCGTATGCCGTCTTCTGC 4148 0.2301945554658998 TruSeq Adapter, Index 15 (95% over 22bp) GAATGATACGGCGACTGTCTCTTATACACATCTGACGCGATAAGTGTCGTA 2671 0.14822797918259845 No Hit CTGTCTCTTATACACATCTGACGCGATAAGTGTCGTATGCCGTCTTCTGCT 2366 0.13130190892775287 TruSeq Adapter, Index 21 (95% over 22bp) AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 2249 0.12480895738736948 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.14090259795755053 0.0 2 0.0 0.0 0.0 0.5538432168634715 0.0 3 0.0 0.0 0.0 0.7727722239302446 0.0 4 0.0 0.0 0.0 1.4909925558588066 0.0 5 0.0 0.0 0.0 3.1161172815732257 0.0 6 0.0 0.0 0.0 4.0588161517996575 0.0 7 0.0 0.0 0.0 4.791187788367517 0.0 8 0.0 0.0 0.0 6.209536980411265 0.0 9 0.0 0.0 0.0 6.726697795837185 0.0 10 0.0 0.0 0.0 8.9219813602345 0.0 11 0.0 0.0 0.0 9.564117618984724 0.0 12 0.0 0.0 0.0 11.038794553024106 0.0 13 0.0 0.0 0.0 11.371322464391433 0.0 14 0.0 0.0 0.0 11.525599432615927 0.0 15 0.0 0.0 0.0 11.833154453443317 0.0 16 0.0 0.0 0.0 12.210966539656395 0.0 17 0.0 0.0 0.0 12.539609779161955 0.0 18 0.0 0.0 0.0 13.068036142987001 0.0 19 0.0 0.0 0.0 13.538025942948599 0.0 20 5.5495312310969095E-5 0.0 0.0 13.78486909210779 0.0 21 5.5495312310969095E-5 0.0 0.0 14.031878727203914 0.0 22 5.5495312310969095E-5 0.0 0.0 14.286935182585127 0.0 23 5.5495312310969095E-5 0.0 0.0 14.551481336371516 0.0 24 5.5495312310969095E-5 0.0 0.0 14.745048985712177 0.0 25 5.5495312310969095E-5 5.5495312310969095E-5 0.0 14.89410939457944 0.0 26 5.5495312310969095E-5 5.5495312310969095E-5 0.0 15.04755393311927 0.0 27 5.5495312310969095E-5 5.5495312310969095E-5 0.0 15.238957265279803 0.0 28 5.5495312310969095E-5 5.5495312310969095E-5 0.0 15.39517656943518 0.0 29 5.5495312310969095E-5 5.5495312310969095E-5 0.0 15.557333872007831 0.0 30 5.5495312310969095E-5 5.5495312310969095E-5 0.0 15.792800482143273 0.0 31 5.5495312310969095E-5 5.5495312310969095E-5 0.0 15.982039497123678 0.0 32 5.5495312310969095E-5 5.5495312310969095E-5 0.0 16.147415527810367 0.0 33 5.5495312310969095E-5 5.5495312310969095E-5 0.0 16.315566324112602 0.0 34 5.5495312310969095E-5 5.5495312310969095E-5 0.0 16.487657287588917 0.0 35 5.5495312310969095E-5 5.5495312310969095E-5 0.0 16.691436074394797 0.0 36 5.5495312310969095E-5 5.5495312310969095E-5 0.0 16.868299634729855 0.0 37 5.5495312310969095E-5 5.5495312310969095E-5 0.0 17.035451515410493 0.0 38 5.5495312310969095E-5 5.5495312310969095E-5 0.0 17.19377964143369 0.0 39 5.5495312310969095E-5 5.5495312310969095E-5 0.0 17.351386328396842 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TGCCAAT 20 7.0343557E-4 45.0 41 TTCGTAA 20 7.0343557E-4 45.0 21 CGTTCCA 20 7.0343557E-4 45.0 22 TCTAGCG 40 6.8193913E-9 45.0 1 TATCTCG 55 1.8189894E-12 45.0 1 ACTACGC 20 7.0343557E-4 45.0 44 GTATATC 20 7.0343557E-4 45.0 21 AACTACG 25 3.8916907E-5 45.0 26 TAAGCCA 20 7.0343557E-4 45.0 37 ATGCACG 35 1.2124474E-7 45.0 1 TCGAATC 25 3.8916907E-5 45.0 20 TACGTAG 25 3.8916907E-5 45.0 1 GTACGCA 30 2.1661908E-6 44.999996 37 CGACGGT 165 0.0 43.636364 28 GATGAAT 7285 0.0 43.5175 20 CGATGAA 7050 0.0 43.053192 19 TGAATGA 7310 0.0 42.876194 22 CGTCGAA 700 0.0 42.75 42 ACGTAAG 100 0.0 42.75 1 GTGTACG 85 0.0 42.35294 1 >>END_MODULE