##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546566_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 2507030 Sequences flagged as poor quality 0 Sequence length 51 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.413056884042074 31.0 31.0 33.0 30.0 34.0 2 31.7819256251421 31.0 31.0 34.0 30.0 34.0 3 31.78425627136492 31.0 31.0 34.0 30.0 34.0 4 35.61009082460122 37.0 35.0 37.0 33.0 37.0 5 35.56191389811849 37.0 35.0 37.0 33.0 37.0 6 35.60756472798491 37.0 35.0 37.0 33.0 37.0 7 35.9647239961229 37.0 35.0 37.0 35.0 37.0 8 34.62831836874708 37.0 35.0 37.0 33.0 37.0 9 36.907258788287336 39.0 37.0 39.0 33.0 39.0 10 36.871856339972 39.0 37.0 39.0 32.0 39.0 11 36.81341467792567 39.0 37.0 39.0 32.0 39.0 12 36.58658372656091 39.0 35.0 39.0 32.0 39.0 13 36.52598812140261 39.0 35.0 39.0 32.0 39.0 14 37.616771638153516 40.0 36.0 41.0 32.0 41.0 15 37.75922386249865 40.0 36.0 41.0 33.0 41.0 16 37.78752388284145 40.0 36.0 41.0 33.0 41.0 17 37.67952198418048 40.0 36.0 41.0 32.0 41.0 18 37.5325847716222 39.0 36.0 41.0 32.0 41.0 19 37.37619055216731 39.0 36.0 41.0 32.0 41.0 20 37.14644938433126 39.0 35.0 41.0 32.0 41.0 21 37.05190923124175 39.0 35.0 41.0 32.0 41.0 22 36.95905114817134 39.0 35.0 41.0 32.0 41.0 23 36.88663199084175 38.0 35.0 41.0 32.0 41.0 24 36.72838059377032 38.0 35.0 41.0 31.0 41.0 25 36.602602681260294 38.0 35.0 41.0 31.0 41.0 26 36.48656617591333 38.0 35.0 40.0 31.0 41.0 27 36.36503432348237 38.0 35.0 40.0 31.0 41.0 28 36.35857967395683 38.0 35.0 40.0 31.0 41.0 29 36.27218302134398 38.0 35.0 40.0 30.0 41.0 30 36.162009628923464 38.0 35.0 40.0 30.0 41.0 31 35.987667877927265 38.0 35.0 40.0 30.0 41.0 32 35.75331886734502 38.0 35.0 40.0 29.0 41.0 33 35.455139747031346 38.0 35.0 40.0 26.0 41.0 34 35.120380689501125 38.0 34.0 40.0 24.0 41.0 35 34.88927097003227 38.0 34.0 40.0 23.0 41.0 36 34.727081048092764 38.0 34.0 40.0 23.0 41.0 37 34.657953036062594 38.0 34.0 40.0 22.0 41.0 38 34.530995241381234 38.0 34.0 40.0 22.0 41.0 39 34.433865171138756 38.0 34.0 40.0 22.0 41.0 40 34.272130768279595 37.0 33.0 40.0 21.0 41.0 41 34.15389365105324 37.0 33.0 40.0 20.0 41.0 42 34.06092348316534 37.0 33.0 40.0 20.0 41.0 43 33.955821829016806 37.0 33.0 40.0 20.0 41.0 44 33.80694207887421 37.0 33.0 40.0 18.0 41.0 45 33.698221002540855 36.0 33.0 40.0 20.0 41.0 46 33.63896323538211 36.0 33.0 40.0 20.0 41.0 47 33.56934181082795 36.0 33.0 40.0 20.0 41.0 48 33.48723708930488 36.0 33.0 40.0 20.0 41.0 49 33.41759332756289 36.0 33.0 40.0 19.0 41.0 50 33.31512427055121 35.0 33.0 40.0 19.0 41.0 51 32.954132180308974 35.0 32.0 39.0 18.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 2.0 10 3.0 11 12.0 12 12.0 13 13.0 14 35.0 15 95.0 16 259.0 17 608.0 18 1386.0 19 2829.0 20 4865.0 21 7738.0 22 11689.0 23 17155.0 24 25361.0 25 38475.0 26 54079.0 27 61777.0 28 61727.0 29 60868.0 30 65029.0 31 74881.0 32 89729.0 33 112718.0 34 177053.0 35 246294.0 36 204749.0 37 257574.0 38 358773.0 39 570787.0 40 455.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 32.12590196367814 22.75154266203436 25.61668587930739 19.505869494980114 2 38.37520891253794 23.63023178821155 24.954308484541468 13.040250814709037 3 28.428538948476884 24.00944543942434 33.9047797593168 13.657235852781977 4 25.031292006876665 25.89247037331025 33.78934436364941 15.286893256163667 5 22.438423154090696 29.104877085635195 33.00379333314719 15.45290642712692 6 20.663813356840564 37.87788738068551 30.860340721890044 10.597958540583878 7 79.86087123010095 4.1043385998572015 13.587392252984607 2.447397917057235 8 76.96254133376944 6.649381937990372 13.108538788925541 3.2795379393146473 9 73.7641352516723 5.509387602062999 16.090234261257343 4.636242885007359 10 38.64871979992262 23.700913032552464 22.56143723848538 15.08892992903954 11 30.970710362460764 23.641081279442208 28.90332385332445 16.48488450477258 12 26.562865222992944 21.060059113772073 33.67638201377726 18.700693649457726 13 22.771765794585626 23.914911269510135 35.2228732803357 18.09044965556854 14 19.930714829898328 27.03158717685867 35.472052588122196 17.5656454051208 15 18.997858023238653 21.853747262697297 41.01913419464466 18.129260519419393 16 21.753190029636663 20.35400453923567 38.29922258608792 19.593582845039748 17 21.412069261237402 21.226311611747764 33.5108873846743 23.85073174234054 18 23.36306306665656 21.66671320247464 34.84094725631524 20.129276474553556 19 25.817241915732957 23.41439871082516 30.81586578541142 19.95249358803046 20 26.361232215011388 23.449739332995616 29.7788618405045 20.410166611488496 21 24.643622134557624 24.338799296378582 32.17488422555773 18.84269434350606 22 23.398563240168645 21.903527281285026 31.64856423736453 23.049345241181797 23 22.09646474114789 24.538198585577355 30.628951388694993 22.73638528457976 24 21.854864122088685 23.445192119759238 34.495877592210704 20.204066165941374 25 22.677351288177643 23.62428850073593 32.30631464322325 21.392045567863168 26 20.32867576375233 25.247404299110897 31.43177385192838 22.992146085208397 27 20.553882482459322 24.16349225976554 32.50930383760864 22.773321420166493 28 20.79943199722381 24.677127916299366 33.94143668005568 20.582003406421144 29 21.623993330753922 23.630909881413466 33.21428144058907 21.53081534724355 30 22.35078957970188 24.150050059233436 33.29577228832523 20.203388072739457 31 24.58191565318325 23.634459898764675 30.340043796843275 21.4435806512088 32 25.219762029173964 23.98499419631995 30.234899462710857 20.56034431179523 33 24.37425958205526 23.687909598209835 29.727007654475614 22.210823165259292 34 21.533049066026333 25.12462954172866 31.867907444266724 21.474413947978285 35 22.17288983378739 24.8062847273467 31.421083912039343 21.599741526826563 36 25.133364977682753 25.34808119567775 28.708790880045314 20.809762946594176 37 23.19704989569331 26.00168326665417 29.798127665006003 21.003139172646517 38 23.49824294085033 26.54375894983307 28.3703027087829 21.5876954005337 39 23.465375364475097 25.356497528948594 27.739436703988385 23.438690402587923 40 24.013314559458802 23.701631013589786 29.78205286733705 22.503001559614365 41 22.087330426839728 23.828753545031372 29.381578999852415 24.702337028276485 42 23.40378854660694 25.57580084801538 27.93177584632015 23.08863475905753 43 22.995018009357686 24.24514265884333 29.558800652564987 23.201038679233992 44 23.12963945385576 25.15649992221872 29.232518158937072 22.48134246498845 45 21.633845626099408 26.051024519052422 29.219754051606884 23.095375803241286 46 23.0785431366996 25.18501972453461 29.04293127724838 22.693505861517412 47 22.265549275437472 25.84269035472252 29.95185538266395 21.939904987176064 48 22.579386764418455 25.069265226183973 29.775551150165736 22.57579685923184 49 22.74412352464869 23.688787130588786 30.3816069213372 23.185482423425327 50 22.157054363130875 24.99794577647655 30.088152116249105 22.756847744143467 51 21.548007004303898 26.079783648380754 29.31975285497182 23.052456492343527 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 2843.0 1 3937.5 2 5032.0 3 33747.5 4 62463.0 5 42743.5 6 23024.0 7 22944.0 8 22864.0 9 23500.5 10 24137.0 11 24154.0 12 24171.0 13 23443.0 14 22715.0 15 21777.0 16 20839.0 17 19915.0 18 18991.0 19 18231.5 20 17472.0 21 17241.5 22 17011.0 23 17156.0 24 17301.0 25 17551.0 26 19105.5 27 20410.0 28 23073.0 29 25736.0 30 28615.5 31 31495.0 32 35506.0 33 39517.0 34 46007.0 35 52497.0 36 57417.0 37 62337.0 38 69001.5 39 75666.0 40 89924.5 41 104183.0 42 113808.0 43 123433.0 44 135680.0 45 147927.0 46 164894.5 47 181862.0 48 186176.5 49 190491.0 50 185166.0 51 179841.0 52 167559.5 53 155278.0 54 144942.5 55 134607.0 56 129907.0 57 125207.0 58 118611.0 59 112015.0 60 107974.0 61 103933.0 62 97106.0 63 90279.0 64 82309.0 65 74339.0 66 64859.5 67 55380.0 68 47830.5 69 40281.0 70 35512.0 71 30743.0 72 26001.0 73 21259.0 74 17810.0 75 11578.5 76 8796.0 77 6516.0 78 4236.0 79 3354.5 80 2473.0 81 1703.5 82 934.0 83 745.5 84 557.0 85 378.5 86 200.0 87 127.5 88 55.0 89 39.5 90 24.0 91 14.0 92 4.0 93 4.5 94 5.0 95 3.5 96 2.0 97 1.5 98 1.0 99 1.5 100 2.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 2507030.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 27.456843616865413 #Duplication Level Percentage of deduplicated Percentage of total 1 77.87082900444562 21.380871742907306 2 6.2233150934144135 3.4174517859671543 3 2.5376801607111235 2.0903006196680156 4 1.486217994988008 1.6322742027582797 5 0.997714226367683 1.3697041743849665 6 0.7975000824628672 1.3138101029172127 7 0.6922655936918929 1.3305199703134354 8 0.5749241451390149 1.262848187571357 9 0.4841735108545489 1.1964488733865832 >10 7.70645957318136 50.1334701425327 >50 0.5778168743711642 9.75950027950733 >100 0.04511007610107128 2.081309321291635 >500 0.004195564989910811 0.7915677634536166 >1k 0.0016482576746078186 0.6952960084389875 >5k 0.0 0.0 >10k+ 1.4984160678252896E-4 1.5446268249013815 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 37544 1.49754889251425 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.03466252896854046 0.0 2 0.0 0.0 0.0 0.15628053912398335 0.0 3 0.0 0.0 0.0 0.33078981902889076 0.0 4 0.0 0.0 0.0 0.5462639058966187 0.0 5 0.0 0.0 0.0 0.97613510807609 0.0 6 0.0 0.0 0.0 1.7750884512750147 0.0 7 0.0 0.0 0.0 2.2442491713302193 0.0 8 0.0 0.0 0.0 3.183926797844461 0.0 9 0.0 0.0 0.0 3.824126556124179 0.0 10 0.0 0.0 0.0 4.69372125582861 0.0 11 0.0 0.0 0.0 5.189247835087733 0.0 12 0.0 0.0 0.0 5.621911185745683 0.0 13 0.0 0.0 0.0 5.859164030745544 0.0 14 0.0 0.0 0.0 5.989876467373745 0.0 15 0.0 0.0 0.0 6.092787082723381 0.0 16 0.0 0.0 0.0 6.256646310574664 0.0 17 0.0 0.0 0.0 6.422420154525474 0.0 18 0.0 0.0 0.0 6.685839419552219 0.0 19 3.988783540683598E-5 0.0 0.0 6.805981579797609 0.0 20 3.988783540683598E-5 0.0 0.0 6.951651954703374 0.0 21 3.988783540683598E-5 0.0 0.0 7.095407713509611 0.0 22 3.988783540683598E-5 0.0 0.0 7.242234835642174 0.0 23 3.988783540683598E-5 0.0 0.0 7.404338998735556 0.0 24 3.988783540683598E-5 0.0 0.0 7.542550348420242 0.0 25 3.988783540683598E-5 0.0 0.0 7.658464398112508 0.0 26 3.988783540683598E-5 0.0 0.0 7.775614970702385 0.0 27 3.988783540683598E-5 0.0 0.0 7.9232398495430845 0.0 28 3.988783540683598E-5 0.0 0.0 8.04912585808706 0.0 29 3.988783540683598E-5 0.0 0.0 8.18426584444542 0.0 30 3.988783540683598E-5 0.0 0.0 8.369465064239359 0.0 31 7.977567081367196E-5 0.0 0.0 8.512861832526934 0.0 32 7.977567081367196E-5 0.0 0.0 8.661124916734144 0.0 33 7.977567081367196E-5 0.0 0.0 8.812938018292561 0.0 34 7.977567081367196E-5 0.0 0.0 8.96247751323279 0.0 35 7.977567081367196E-5 0.0 0.0 9.132359804230504 0.0 36 7.977567081367196E-5 0.0 0.0 9.285090326003278 0.0 37 7.977567081367196E-5 0.0 0.0 9.446675947236372 0.0 38 7.977567081367196E-5 0.0 0.0 9.622102647355636 0.0 39 7.977567081367196E-5 0.0 0.0 9.888314060860859 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGTTTTT 22500 0.0 42.51 1 TATAGCG 145 0.0 40.344826 1 CGGTCTA 140 0.0 38.57143 31 ACGGGTA 165 0.0 38.18182 5 CATATGC 1915 0.0 37.832897 33 TAGCATA 1935 0.0 37.790695 30 TAGGGCG 1360 0.0 37.72059 5 ATAGGGC 1210 0.0 37.561985 4 AGGGTAC 1230 0.0 37.5 6 GGGCGAT 5910 0.0 37.46193 7 GCGATAC 145 0.0 37.24138 9 CGTAAGG 330 0.0 36.818184 2 GGGTACC 2155 0.0 36.64733 7 ATTCGGC 395 0.0 36.455696 17 CCAGTAG 2050 0.0 36.439026 26 AGGGCGA 3075 0.0 36.439022 6 GTAGCAT 2040 0.0 36.39706 29 GGTACCT 2095 0.0 36.300716 8 TCACGAC 155 0.0 36.29032 25 GTAGGGC 1240 0.0 36.29032 4 >>END_MODULE