SRR1546563_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1546563_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	2895105
Sequences flagged as poor quality	0
Sequence length	51
%GC	44

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	44914	1.5513772384766702	No Hit
CGTTTCTGTCTCTTATACACATCTGACGCGAGGCGTATCGTATGCCGTCTT	4404	0.15211883506815815	No Hit
CGTTCTGTCTCTTATACACATCTGACGCGAGGCGTATCGTATGCCGTCTTC	3007	0.10386497208218701	No Hit
CGTTTTCTGTCTCTTATACACATCTGACGCGAGGCGTATCGTATGCCGTCT	2986	0.10313960978962766	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGTTTTT	36605	43.352684	1
TAATGCG	105	40.714287	1
CGTAAGG	345	39.782608	2
CGACGGT	165	39.545456	28
TACGGGA	715	39.335663	4
GACCGAT	1740	39.181034	9
AGTACGG	310	38.46774	2
TAGCATA	1820	38.324173	30
GTTTTTT	41035	38.080296	2
GCGATAT	385	37.987015	9
TGATTCG	355	37.394367	15
TAACGCC	265	37.35849	12
AGGGCGA	3395	37.24595	6
GGACCGA	1850	37.094593	8
GTTGATC	1895	37.04485	16
GGGTACC	2130	36.971832	7
CCAGTAG	1905	36.968506	26
GTAGCAT	1895	36.926117	29
GGGCGAT	6875	36.785454	7
AGCATAT	1910	36.636127	31