SRR1546562_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1546562_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	552414
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3940	0.7132331910487425	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTCACGT	35	1.2103919E-7	45.000004	45
TCCGCAA	20	7.0301007E-4	45.000004	32
ACGTTAG	20	7.0301007E-4	45.000004	1
CACGACG	35	1.2103919E-7	45.000004	26
GTTACAC	50	2.1827873E-11	45.000004	33
AATGCGT	20	7.0301007E-4	45.000004	29
TACACGG	20	7.0301007E-4	45.000004	2
CCGCAAA	30	2.163446E-6	45.000004	41
TGATTCG	65	0.0	41.53846	15
TAGGGCG	290	0.0	41.12069	5
CGTTTTT	2480	0.0	41.008064	1
CGGGTAT	50	1.0786607E-9	40.500004	6
TTTACGG	45	1.9252184E-8	40.0	2
TAACGCC	45	1.9252184E-8	40.0	12
ACGGGAT	90	0.0	40.0	5
ATAACGC	45	1.9252184E-8	40.0	11
CGCATCG	40	3.453879E-7	39.375004	21
CGGTCTA	40	3.453879E-7	39.375004	31
CGTTTAT	40	3.453879E-7	39.375004	39
ATAGGGC	275	0.0	39.272728	4