##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546555_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1546687 Sequences flagged as poor quality 0 Sequence length 50 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 30.58874549278555 31.0 30.0 31.0 27.0 34.0 2 30.930890348208784 31.0 31.0 33.0 28.0 34.0 3 31.02781041025107 31.0 31.0 34.0 28.0 34.0 4 34.88859801627608 35.0 35.0 37.0 32.0 37.0 5 34.70206706334248 35.0 35.0 37.0 32.0 37.0 6 34.73482417580286 35.0 35.0 37.0 32.0 37.0 7 35.35289622270052 35.0 35.0 37.0 33.0 37.0 8 34.311375216834435 35.0 35.0 37.0 32.0 37.0 9 36.42674051052346 39.0 37.0 39.0 32.0 39.0 10 35.91857369978541 38.0 35.0 39.0 30.0 39.0 11 35.59226979990134 37.0 35.0 39.0 30.0 39.0 12 35.10686648300529 37.0 34.0 39.0 30.0 39.0 13 34.900703245065095 37.0 33.0 39.0 27.0 39.0 14 35.783731291463624 38.0 34.0 40.0 27.0 41.0 15 35.989443242233236 38.0 34.0 40.0 29.0 41.0 16 36.07704273715367 38.0 34.0 40.0 30.0 41.0 17 35.92613566933711 38.0 34.0 40.0 29.0 41.0 18 35.79008487172906 38.0 34.0 40.0 29.0 41.0 19 35.707766341864904 37.0 34.0 40.0 29.0 41.0 20 35.47083217224946 37.0 34.0 40.0 29.0 41.0 21 35.29393859261764 37.0 33.0 40.0 28.0 41.0 22 35.25422596814999 36.0 33.0 40.0 28.0 41.0 23 35.162233858563496 36.0 33.0 40.0 28.0 41.0 24 35.085308792276656 36.0 33.0 40.0 27.0 41.0 25 34.90248059238876 36.0 33.0 40.0 27.0 41.0 26 34.67581676189171 36.0 33.0 40.0 26.0 41.0 27 34.48077083469377 36.0 33.0 40.0 25.0 41.0 28 34.44485406549612 36.0 33.0 39.0 25.0 41.0 29 34.22514251429022 36.0 33.0 39.0 24.0 41.0 30 34.14421793161771 36.0 33.0 39.0 24.0 41.0 31 34.018840269556804 36.0 33.0 39.0 23.0 41.0 32 33.65308947447027 35.0 32.0 39.0 23.0 41.0 33 33.36497300358767 35.0 32.0 39.0 21.0 41.0 34 33.06473966613801 35.0 31.0 39.0 19.0 41.0 35 32.799975043431544 35.0 31.0 39.0 18.0 41.0 36 32.746094070746054 35.0 31.0 39.0 18.0 41.0 37 32.76328306890793 35.0 31.0 39.0 18.0 41.0 38 32.735982134717624 35.0 31.0 39.0 18.0 41.0 39 32.620442274358034 35.0 31.0 39.0 18.0 41.0 40 32.52017699767309 35.0 31.0 39.0 17.0 41.0 41 32.53404082403227 35.0 31.0 39.0 18.0 41.0 42 32.35177705637921 35.0 30.0 39.0 16.0 41.0 43 32.38021655318755 35.0 30.0 39.0 17.0 41.0 44 32.0828247732088 35.0 30.0 39.0 15.0 41.0 45 32.00286871228633 35.0 30.0 39.0 15.0 40.0 46 31.930135185722772 35.0 30.0 39.0 15.0 40.0 47 31.857336358293566 35.0 30.0 39.0 15.0 40.0 48 31.866267706394378 35.0 30.0 39.0 15.0 40.0 49 31.86697373159534 35.0 30.0 39.0 15.0 40.0 50 31.36457667259116 35.0 29.0 38.0 15.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 1.0 10 2.0 11 3.0 12 6.0 13 7.0 14 39.0 15 115.0 16 325.0 17 926.0 18 1860.0 19 3548.0 20 5966.0 21 9139.0 22 13343.0 23 18754.0 24 25006.0 25 33490.0 26 42851.0 27 50013.0 28 53797.0 29 57123.0 30 63952.0 31 74298.0 32 86772.0 33 104636.0 34 142070.0 35 148297.0 36 132098.0 37 151934.0 38 172003.0 39 154313.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 32.39032848921598 22.625715480895618 26.006619309530628 18.97733672035777 2 37.71913774409431 23.555121365861353 25.979270531141722 12.74647035890261 3 28.38040275763616 24.603232586812975 33.96065267245409 13.055711983096774 4 26.073989113505192 25.90103880099852 33.61559255363238 14.409379531863914 5 22.934957105089783 29.771828430703824 32.721229311425 14.571985152781398 6 20.44873979027431 39.269677704668105 30.455806507716172 9.825775997341415 7 82.75242502199863 3.3862701373969 12.22470997687315 1.6365948637313172 8 81.08214525628003 5.934232330135315 11.307265141557405 1.6763572720272426 9 79.35102577315256 4.348003183578837 13.171055294316176 3.129915748952438 10 44.88406510173034 26.163535350074064 17.88674760956806 11.065651938627532 11 34.7560948013399 23.275556075663662 27.293951523482125 14.674397599514316 12 31.277692254476825 20.936427344381894 31.018816347457502 16.76706405368378 13 24.061106093217308 25.24221125541237 31.62217048439665 19.07451216697367 14 18.90266097794835 28.36585553508887 34.29536809968662 18.436115387276157 15 19.63674615484581 22.390373747241686 39.821825618240794 18.15105447967171 16 23.837854717858235 20.475571334083757 37.37918531674475 18.307388631313252 17 22.774937657069593 21.05105945805454 32.19953358371797 23.974469301157892 18 24.404873125590377 22.636965332998855 33.497598415193245 19.460563126217522 19 26.90460319379422 24.894047729113904 29.51683178303044 18.684517294061436 20 29.434720793541292 24.061429364829472 28.770397630548388 17.733452211080845 21 26.02633887787251 25.408825444320666 30.800349391958427 17.764486285848395 22 24.0339512777957 21.44945939288298 32.617071197986405 21.89951813133491 23 23.725420851148293 24.500561522790328 31.454457172007004 20.319560454054375 24 23.780635642505562 22.849548745156582 34.089379428417 19.280436183920855 25 22.96456878476382 23.296310113164463 32.43739683594677 21.30172426612495 26 20.704382981172014 26.426419825084196 31.748957610686585 21.120239583057206 27 20.94231088772324 25.09169599278975 32.71715608911176 21.24883703037525 28 20.12941209178069 25.569685398532478 34.57693767387972 19.723964835807113 29 22.332184857052525 24.675451464969964 33.79209885387283 19.200264824104682 30 23.07506302180079 24.195716392521565 33.30428199112038 19.42493859455727 31 27.86724140049021 22.541535553088636 29.485215819360995 20.10600722706016 32 28.366308115345895 23.8563458540739 28.888327114665085 18.889018915915116 33 27.79592768284727 24.34299893902257 28.07051459021767 19.790558787912488 34 22.8553676341755 25.55850020075167 30.261132342872216 21.324999822200613 35 22.32804698041685 26.39208837987259 30.150314834223085 21.12954980548747 36 25.691494141995115 28.287817767912966 26.59458571773087 19.426102372361054 37 24.205479195208856 29.032635562334203 25.946167518056335 20.815717724400606 38 23.443075425086008 30.39761761752701 24.849112975023388 21.310193982363593 39 23.95436180688142 27.581857221273598 26.061187557663573 22.402593414181407 40 24.08864883457351 24.904069149090926 27.78862174441241 23.21866027192315 41 21.12948515116504 25.518673138133313 27.98885618098555 25.3629855297161 42 22.316538511023882 26.38258419447503 26.033386199017645 25.26749109548344 43 21.712149904925816 25.289926145367485 27.134707927331124 25.863216022375568 44 21.93688832970084 25.77418702038615 29.095932143995523 23.192992505917488 45 22.345826919085763 27.96545131626502 27.18759516308083 22.501126601568387 46 23.043899638388375 27.94346884663801 27.88431014161236 21.128321373361256 47 21.85510061182385 26.60312008829194 28.594214601920104 22.9475646979641 48 22.33360725214604 24.827971011587994 30.714941032025227 22.12348070424074 49 23.248207297274757 24.35754616156986 30.571861016482327 21.82238552467306 50 20.922203393446768 26.737924350563496 29.672519391447654 22.66735286454208 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 544.0 1 1490.5 2 2437.0 3 18528.5 4 34620.0 5 25059.0 6 15498.0 7 15048.5 8 14599.0 9 14786.0 10 14973.0 11 14786.5 12 14600.0 13 13795.5 14 12991.0 15 12265.0 16 11539.0 17 10655.5 18 9772.0 19 9435.5 20 9099.0 21 8777.0 22 8455.0 23 8563.0 24 8671.0 25 9769.5 26 10868.0 27 12997.5 28 15127.0 29 16498.5 30 17870.0 31 21040.5 32 24211.0 33 28100.5 34 31990.0 35 35102.0 36 38214.0 37 43052.5 38 47891.0 39 52759.0 40 57627.0 41 68595.5 42 79564.0 43 86975.5 44 94387.0 45 93979.5 46 93572.0 47 94980.5 48 96389.0 49 98548.5 50 100708.0 51 96332.0 52 91956.0 53 88199.0 54 84442.0 55 83591.0 56 82740.0 57 84425.0 58 86110.0 59 85560.0 60 85010.0 61 80788.5 62 76567.0 63 67834.0 64 59101.0 65 49704.5 66 40308.0 67 33500.0 68 26692.0 69 22572.0 70 18452.0 71 15666.5 72 12881.0 73 10415.5 74 7950.0 75 5999.0 76 4048.0 77 3232.5 78 2417.0 79 1735.5 80 1054.0 81 730.0 82 406.0 83 297.5 84 189.0 85 141.0 86 93.0 87 58.0 88 23.0 89 22.0 90 21.0 91 13.0 92 5.0 93 4.5 94 4.0 95 2.5 96 1.0 97 0.5 98 0.0 99 0.5 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 1546687.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 30.05953372804882 #Duplication Level Percentage of deduplicated Percentage of total 1 75.49326727672691 22.692924139453766 2 5.759577106884599 3.462604046073909 3 2.717626021864936 2.450717131934166 4 1.8905723913542665 2.2731889825292595 5 1.4451432522206633 2.1720166165994597 6 1.2163796365356627 2.1938282826333313 7 1.0831353327713922 2.2790980147238136 8 0.8965679254043001 2.1560331034541855 9 0.8247775711347284 2.23131862958963 >10 8.427617167584673 50.63360970016723 >50 0.2100650112538615 3.9599570256525203 >100 0.03329961961586103 1.8450788476582096 >500 0.0015335340596538578 0.329661682655885 >1k 2.1907629423626536E-4 0.07263620374938896 >5k 0.0 0.0 >10k+ 2.1907629423626536E-4 1.2473275931252732 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 18941 1.2246175211920705 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0047844198599975305 0.0 2 0.0 0.0 0.0 0.023404864720528457 0.0 3 0.0 0.0 0.0 0.04357701331943697 0.0 4 0.0 0.0 0.0 0.07234818680185455 0.0 5 0.0 0.0 0.0 0.14547222547289787 0.0 6 0.0 0.0 0.0 0.27840151239391037 0.0 7 0.0 0.0 0.0 0.38708542840277316 0.0 8 0.0 0.0 0.0 0.6301856807485936 0.0 9 0.0 0.0 0.0 0.8066273266666106 0.0 10 0.0 0.0 0.0 1.0064091829827237 0.0 11 0.0 0.0 0.0 1.1131534693186145 0.0 12 0.0 0.0 0.0 1.2080660146493765 0.0 13 0.0 0.0 0.0 1.2545524724782713 0.0 14 0.0 0.0 0.0 1.276858213717449 0.0 15 0.0 0.0 0.0 1.2981941401201407 0.0 16 0.0 0.0 0.0 1.3322023137195826 0.0 17 0.0 0.0 0.0 1.3665337589311866 0.0 18 0.0 0.0 0.0 1.4277614022746683 0.0 19 0.0 0.0 0.0 1.4643557487714063 0.0 20 0.0 0.0 0.0 1.5024371446840892 0.0 21 0.0 0.0 0.0 1.5445271085875811 0.0 22 0.0 0.0 0.0 1.5917247639632324 0.0 23 0.0 0.0 0.0 1.6389224193388836 0.0 24 0.0 0.0 0.0 1.6784262103450796 0.0 25 0.0 0.0 0.0 1.7142447049726286 0.0 26 0.0 0.0 0.0 1.7523261008853117 0.0 27 0.0 0.0 0.0 1.7924764351158315 0.0 28 0.0 0.0 0.0 1.8332086582482428 0.0 29 0.0 0.0 0.0 1.8804709679463265 0.0 30 0.0 0.0 0.0 1.947452845986292 0.0 31 0.0 0.0 0.0 2.005641736175451 0.0 32 0.0 0.0 0.0 2.068162465967581 3.232716121619953E-4 33 0.0 0.0 0.0 2.1337219489140336 3.232716121619953E-4 34 0.0 0.0 0.0 2.1926866909723817 3.232716121619953E-4 35 0.0 0.0 0.0 2.258892717143158 3.232716121619953E-4 36 0.0 0.0 0.0 2.327232335954204 3.232716121619953E-4 37 0.0 0.0 0.0 2.3984167449522755 3.232716121619953E-4 38 0.0 0.0 0.0 2.5040619078068156 3.232716121619953E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGTTTTT 13575 0.0 42.897976 1 CCGATGA 695 0.0 39.568344 18 CGATGAA 730 0.0 37.36986 19 GTTTTTT 15775 0.0 37.236134 2 ACGGGAT 390 0.0 37.23077 5 CGGGGTA 245 0.0 36.816326 6 CGACCCG 835 0.0 36.622753 32 GCAACGA 170 0.0 36.235294 11 GCGCGAC 840 0.0 36.142857 9 TCAGACG 865 0.0 35.606937 22 TAAGGGA 1255 0.0 35.585655 4 TAGGGCG 575 0.0 35.58261 5 ACCCGCT 860 0.0 35.55814 34 TACGGGA 305 0.0 35.34426 4 TAGGGAC 1055 0.0 35.241707 5 GCGAACC 25 0.0023529956 35.2 33 ACGGGAC 250 0.0 35.2 5 TAGGACG 75 1.8189894E-12 35.2 1 CGGTAGT 225 0.0 35.2 12 CTTACCG 25 0.0023529956 35.2 1 >>END_MODULE