##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546553_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 813925 Sequences flagged as poor quality 0 Sequence length 50 %GC 47 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 30.595769880517246 31.0 30.0 31.0 28.0 33.0 2 30.916884233805327 31.0 31.0 33.0 28.0 34.0 3 31.071382498387443 31.0 31.0 34.0 28.0 34.0 4 34.90542740424486 35.0 35.0 37.0 32.0 37.0 5 34.694178210523084 35.0 35.0 37.0 32.0 37.0 6 34.72540590349234 35.0 35.0 37.0 32.0 37.0 7 35.38325029947477 35.0 35.0 37.0 33.0 37.0 8 34.363497865282426 35.0 35.0 37.0 32.0 37.0 9 36.506730964155174 39.0 37.0 39.0 32.0 39.0 10 35.91831556961637 38.0 35.0 39.0 30.0 39.0 11 35.58865866019596 37.0 35.0 39.0 30.0 39.0 12 34.80435912399791 37.0 33.0 39.0 29.0 39.0 13 34.35479436065977 37.0 33.0 39.0 25.0 39.0 14 35.20337254661056 37.0 33.0 40.0 25.0 41.0 15 35.62168995914857 37.0 33.0 40.0 28.0 41.0 16 35.8228473139417 37.0 34.0 40.0 30.0 41.0 17 35.76040667137636 37.0 34.0 40.0 29.0 41.0 18 35.69613416469576 37.0 34.0 40.0 29.0 41.0 19 35.64336271769512 37.0 34.0 40.0 29.0 41.0 20 35.43833768467611 36.0 34.0 40.0 29.0 41.0 21 35.22635009368185 36.0 33.0 40.0 28.0 41.0 22 35.195490985041616 36.0 33.0 40.0 27.0 41.0 23 35.16722671007771 36.0 33.0 40.0 28.0 41.0 24 35.09522130417422 36.0 33.0 40.0 27.0 41.0 25 34.886482169733085 36.0 33.0 40.0 27.0 41.0 26 34.71546764136745 36.0 33.0 40.0 27.0 41.0 27 34.50696194366803 35.0 33.0 39.0 25.0 41.0 28 34.537458611051385 36.0 33.0 39.0 25.0 41.0 29 34.389426544214764 36.0 33.0 39.0 25.0 41.0 30 34.410687716927235 36.0 33.0 39.0 25.0 41.0 31 34.295690634886505 36.0 33.0 39.0 25.0 41.0 32 34.04627084805111 35.0 33.0 39.0 24.0 41.0 33 33.888559756734345 35.0 32.0 39.0 23.0 41.0 34 33.78711306324293 35.0 32.0 39.0 23.0 41.0 35 33.58839573670793 35.0 32.0 39.0 23.0 41.0 36 33.46226863654513 35.0 32.0 39.0 22.0 41.0 37 33.4540565776945 35.0 32.0 39.0 23.0 41.0 38 33.498354270970914 35.0 32.0 39.0 23.0 41.0 39 33.431950118254136 35.0 32.0 39.0 23.0 41.0 40 33.290707374758114 35.0 31.0 39.0 22.0 41.0 41 33.336580151733884 35.0 32.0 39.0 22.0 41.0 42 33.19760911631907 35.0 31.0 39.0 22.0 41.0 43 33.21824492428664 35.0 32.0 39.0 22.0 41.0 44 32.90872254814633 35.0 31.0 39.0 21.0 41.0 45 32.83046472340818 35.0 31.0 39.0 21.0 40.0 46 32.80039438523205 35.0 31.0 39.0 21.0 40.0 47 32.72680652394262 35.0 31.0 39.0 21.0 40.0 48 32.75424148416623 35.0 31.0 39.0 21.0 40.0 49 32.777470897195684 35.0 31.0 39.0 21.0 40.0 50 32.209079460638264 35.0 30.0 38.0 20.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 1.0 11 2.0 12 4.0 13 7.0 14 17.0 15 42.0 16 139.0 17 331.0 18 684.0 19 1411.0 20 2429.0 21 3719.0 22 5447.0 23 7765.0 24 10574.0 25 14154.0 26 18265.0 27 22323.0 28 24895.0 29 28850.0 30 33526.0 31 40364.0 32 48383.0 33 59407.0 34 83974.0 35 90711.0 36 67628.0 37 77482.0 38 88198.0 39 83193.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 35.41702245292871 23.100654237184017 27.90699388764321 13.575329422244064 2 33.20490217157601 24.582731824185274 28.911386184230736 13.300979820007985 3 29.983106551586445 25.329360813342756 30.972386890684035 13.715145744386767 4 27.119329176521177 26.919187885861717 30.57480726111128 15.38667567650582 5 23.28113769696225 31.857480726111127 29.848450410050063 15.012931166876555 6 20.455324507786344 41.14642012470436 28.03501551125718 10.363239856252111 7 87.32905365973524 3.742973861228 7.267868661117424 1.6601038179193415 8 85.48588629173449 5.871671222778511 6.821390177227632 1.8210523082593606 9 84.22532788647604 4.23405104892957 8.597966643118223 2.9426544214761803 10 50.28448567128421 23.177688361949812 14.202168504469084 12.335657462296895 11 42.06186073655435 22.41238443345517 20.589857787879716 14.93589704211076 12 36.819854409190036 21.602358939705745 25.827318241852748 15.750468409251466 13 23.26184845041005 33.35577602358939 26.547777743649597 16.834597782350954 14 17.771047700955247 35.48484196946893 29.8522591147833 16.891851214792517 15 16.620450287188625 22.954326258561906 42.825444604846886 17.599778849402586 16 19.819639401664773 19.58792272015235 40.078385600638875 20.514052277544 17 19.990908253217434 19.668151242436345 28.81801148754492 31.522929016801303 18 23.281874865620296 23.111588905611697 33.04788524741223 20.558650981355775 19 28.492182940688636 25.003777989372484 25.92302730595571 20.581011763983167 20 30.411155819025094 24.064010811806984 24.968885339558312 20.55594802960961 21 24.84368952913352 27.533617962342966 27.843965967380285 19.778726541143225 22 23.774672113523973 22.46251190220229 27.78536105906564 25.9774549252081 23 21.873022698651596 27.881315846054612 26.68341677673004 23.562244678563747 24 21.80262309180821 24.4402125502964 34.848788279018336 18.908376078877044 25 21.235248947998894 24.471910802592376 32.40273981017907 21.89010043922966 26 19.04770095524772 30.84608532727217 27.226095770494823 22.880117946985287 27 19.94458948920355 29.454188039438524 30.035936972079735 20.56528549927819 28 18.279694075006912 26.663636084405812 35.75857726448997 19.298092576097307 29 19.3429370027951 25.59584728322634 33.94305372116595 21.118161992812606 30 22.227232238842646 27.432748717633686 31.291212335288876 19.04880670823479 31 30.2939460023958 24.304204932886936 25.217556900205796 20.184292164511472 32 29.350247258654054 25.241023435820253 25.930030408207145 19.47869889731855 33 27.251036643425376 25.578769542648278 25.497680990263234 21.672512823663116 34 20.517983843720245 26.609699910925457 28.060079245630742 24.81223699972356 35 21.40148048038824 25.24950087538778 30.206960100746382 23.142058543477592 36 29.441901895137757 24.645268298676168 25.816137850539057 20.09669195564702 37 21.748195472555825 30.393586632675003 26.405749915532756 21.452467979236417 38 22.172313173818225 31.125103664342536 23.452283687071905 23.25029947476733 39 22.113216819731548 28.490708603372543 25.449273581718217 23.94680099517769 40 24.246828639002366 24.47854532051479 26.799643701815278 24.474982338667566 41 19.94360659765949 23.83856006388795 27.648616272998126 28.56921706545443 42 22.4851184077157 25.48785207482262 24.790736247197223 27.23629327026446 43 21.6304942101545 24.984980188592314 26.3518137420524 27.032711859200788 44 20.79773934944866 27.275608932026906 28.850201185612924 23.076450532911508 45 20.328285775716438 31.695672205670057 24.695641490309303 23.280400528304206 46 23.274134594710816 28.385539208158 27.02939460023958 21.310931596891606 47 22.38990078938477 26.612280001228616 27.184322879872227 23.81349632951439 48 22.28657431581534 25.289553705808277 30.15548115612618 22.268390822250208 49 22.424179131983905 24.35531529317812 30.694720029486746 22.52578554535123 50 20.58408330005836 29.30872009091747 27.633135731179166 22.47406087784501 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 414.0 1 810.5 2 1207.0 3 4341.5 4 7476.0 5 5532.0 6 3588.0 7 3682.5 8 3777.0 9 3934.0 10 4091.0 11 4027.5 12 3964.0 13 3933.0 14 3902.0 15 3750.0 16 3598.0 17 3375.0 18 3152.0 19 3081.5 20 3011.0 21 3298.5 22 3586.0 23 3647.0 24 3708.0 25 4357.0 26 5006.0 27 5645.0 28 6284.0 29 7722.5 30 9161.0 31 10795.0 32 12429.0 33 14789.0 34 17149.0 35 18351.5 36 19554.0 37 21457.0 38 23360.0 39 28636.0 40 33912.0 41 43442.5 42 52973.0 43 60374.0 44 67775.0 45 68114.0 46 68453.0 47 65869.5 48 63286.0 49 63242.5 50 63199.0 51 59258.0 52 55317.0 53 50151.0 54 44985.0 55 43499.0 56 42013.0 57 41075.0 58 40137.0 59 39303.0 60 38469.0 61 35225.0 62 31981.0 63 28230.5 64 24480.0 65 20915.0 66 17350.0 67 14424.0 68 11498.0 69 9757.0 70 8016.0 71 6529.0 72 5042.0 73 4230.5 74 3419.0 75 2532.0 76 1645.0 77 1257.5 78 870.0 79 635.5 80 401.0 81 284.0 82 167.0 83 113.0 84 59.0 85 47.0 86 35.0 87 24.5 88 14.0 89 9.5 90 5.0 91 5.0 92 5.0 93 3.5 94 2.0 95 1.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 813925.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 30.368494003488784 #Duplication Level Percentage of deduplicated Percentage of total 1 76.57012944380912 23.253195168606773 2 6.415889785925587 3.8968182098185227 3 2.419270674762299 2.2040882093800542 4 1.4972435150844063 1.8187612283841308 5 1.1428040800037012 1.7352619425377456 6 0.9491380110966489 1.7294335199083108 7 0.8125454111345692 1.7273046311921743 8 0.7342487741033599 1.7838423594741502 9 0.696147439165288 1.9026854398651607 >10 8.52696984803862 52.93057869209764 >50 0.1918335715828753 3.7043937103282425 >100 0.040197490678625394 2.115380537675154 >500 0.003183959657712901 0.6959411002133205 >1k 3.9799495721411265E-4 0.5023152505186801 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 4156 0.5106121571397856 No Hit GTACAAGGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACT 857 0.10529225665755444 No Hit AGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAAT 837 0.10283502779740149 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0229750898424302 0.0 2 0.0 0.0 0.0 0.0911631907116749 0.0 3 0.0 0.0 0.0 0.13871056915563473 0.0 4 0.0 0.0 0.0 0.22459071781798076 0.0 5 0.0 0.0 0.0 0.435052369690082 0.0 6 0.0 0.0 0.0 0.6273305279970514 0.0 7 0.0 0.0 0.0 0.7603894707743343 0.0 8 0.0 0.0 0.0 1.0681573855084927 0.0 9 0.0 0.0 0.0 1.188561599655988 0.0 10 0.0 0.0 0.0 1.4119237030438923 0.0 11 0.0 0.0 0.0 1.6188223730687716 0.0 12 0.0 0.0 0.0 1.7972171883158767 0.0 13 0.0 0.0 0.0 1.8682311023742975 0.0 14 0.0 0.0 0.0 1.8988236016832019 0.0 15 0.0 0.0 0.0 1.9420708296218938 0.0 16 0.0 0.0 0.0 2.044045827318242 0.0 17 0.0 0.0 0.0 2.161255643947538 0.0 18 0.0 0.0 0.0 2.347759314433148 0.0 19 0.0 0.0 0.0 2.4267592222870658 0.0 20 0.0 0.0 0.0 2.5079706361151213 0.0 21 0.0 0.0 0.0 2.609208465153423 0.0 22 0.0 0.0 0.0 2.7070061737875113 0.0 23 0.0 0.0 0.0 2.8213901772276317 0.0 24 0.0 0.0 0.0 2.915870626900513 0.0 25 0.0 0.0 0.0 2.9965905949565377 0.0 26 0.0 0.0 0.0 3.0793992075436925 0.0 27 0.0 0.0 0.0 3.16417360321897 0.0 28 0.0 0.0 0.0 3.254845348158614 0.0 29 0.0 0.0 0.0 3.356451761525939 0.0 30 0.0 0.0 0.0 3.4984795896427805 0.0 31 0.0 0.0 0.0 3.6150750990570386 0.0 32 0.0 0.0 0.0 3.721350247258654 0.0 33 0.0 0.0 0.0 3.8426144915072027 0.0 34 0.0 0.0 0.0 3.965844518843874 0.0 35 0.0 0.0 0.0 4.123475750222687 0.0 36 0.0 0.0 0.0 4.240071259636944 0.0 37 0.0 0.0 0.0 4.37927327456461 0.0 38 0.0 0.0 0.0 4.526215560401757 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GTTTACG 40 8.307325E-9 44.0 1 GCGTAGT 30 2.5268018E-6 44.0 16 GTACGTC 20 7.855126E-4 44.0 28 CGTTTTT 3250 0.0 42.17231 1 CGGGTAT 75 0.0 41.066666 6 CGACGGT 130 0.0 40.615383 28 CGGTCTA 130 0.0 40.615383 31 TATAGCG 60 3.6379788E-12 40.333332 1 CGACCCG 585 0.0 40.239315 32 ACCCGCT 595 0.0 39.563026 34 CCGCTGA 605 0.0 39.272728 36 GCGCGAC 630 0.0 39.11111 9 TTACGGG 180 0.0 39.11111 3 CGCTGAA 620 0.0 39.032257 37 CACGACG 130 0.0 38.923077 26 TCAGACG 635 0.0 38.803146 22 AGACGTG 620 0.0 38.67742 24 ATAGGGC 370 0.0 38.64865 4 ACGTAAG 40 4.1225576E-7 38.5 1 AGGGCGC 360 0.0 38.5 6 >>END_MODULE