SRR1546552_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1546552_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	2383988
Sequences flagged as poor quality	0
Sequence length	50
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	6623	0.27781180106611275	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCACGATCTGTCGTATGCC	3965	0.16631795126485538	No Hit
GAATGATACGGCGACCACCGATGAATGATACGGCGACCACCTGTCGAATG	3333	0.13980775071015458	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCACGATCTGTCGTATG	2439	0.10230756195081518	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATCGTTC	25	4.4442837E-5	44.0	30
CCGATGA	6500	0.0	42.815384	18
CGATGAA	6595	0.0	42.665657	19
CCCCGTA	160	0.0	42.625	40
TATAGCG	120	0.0	42.16667	1
CGATCGC	80	0.0	41.25	34
CGTTTTT	6190	0.0	41.227787	1
ACCGATG	6810	0.0	40.83407	17
CCACCGA	7400	0.0	40.283783	15
GATGAAT	7055	0.0	40.25797	20
CGTTAGG	345	0.0	40.173912	2
TGAATGA	6960	0.0	40.143677	22
GTCGAAT	650	0.0	39.93846	43
TTTAGCG	160	0.0	39.875	1
GTATCGA	50	1.3496901E-9	39.600002	10
CACCGAT	7305	0.0	39.57289	16
GCGAACC	340	0.0	39.47059	33
ATGAATG	7145	0.0	39.227432	21
TAGAACG	90	0.0	39.11111	1
ACCACCG	7805	0.0	38.672646	14