##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546551_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1894795 Sequences flagged as poor quality 0 Sequence length 50 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 30.741098113516237 31.0 31.0 31.0 28.0 34.0 2 31.072532912531436 31.0 31.0 33.0 28.0 34.0 3 31.209067471678996 31.0 31.0 34.0 28.0 34.0 4 35.04421058742503 35.0 35.0 37.0 32.0 37.0 5 34.86387181726783 35.0 35.0 37.0 32.0 37.0 6 34.89607371773727 35.0 35.0 37.0 32.0 37.0 7 35.491198256275744 36.0 35.0 37.0 35.0 37.0 8 34.45127889824493 37.0 35.0 37.0 33.0 37.0 9 36.60628722368383 39.0 37.0 39.0 32.0 39.0 10 36.09880857823669 38.0 35.0 39.0 31.0 39.0 11 35.80239603756607 37.0 35.0 39.0 30.0 39.0 12 35.293119308421225 37.0 34.0 39.0 30.0 39.0 13 34.99612095239854 37.0 34.0 39.0 27.0 39.0 14 35.92474383772387 38.0 34.0 40.0 28.0 41.0 15 36.22765417894812 38.0 34.0 40.0 30.0 41.0 16 36.34913750564045 38.0 34.0 40.0 30.0 41.0 17 36.26625360527128 38.0 34.0 40.0 30.0 41.0 18 36.16639425373194 38.0 34.0 40.0 30.0 41.0 19 36.13704173802443 37.0 34.0 40.0 30.0 41.0 20 35.96131718734745 37.0 34.0 40.0 30.0 41.0 21 35.76386891457915 37.0 34.0 40.0 29.0 41.0 22 35.70111436857285 37.0 34.0 40.0 29.0 41.0 23 35.64897416343193 37.0 34.0 40.0 29.0 41.0 24 35.569534435123586 37.0 34.0 40.0 29.0 41.0 25 35.42508661886906 37.0 34.0 40.0 29.0 41.0 26 35.24439847054695 37.0 34.0 40.0 27.0 41.0 27 35.07026987088313 37.0 33.0 40.0 27.0 41.0 28 35.07139928066097 36.0 34.0 40.0 27.0 41.0 29 34.962677756696635 36.0 33.0 40.0 27.0 41.0 30 34.967845598072614 36.0 33.0 40.0 27.0 41.0 31 34.87367287754084 37.0 33.0 40.0 26.0 41.0 32 34.60148248227381 37.0 33.0 40.0 25.0 41.0 33 34.40730791457651 37.0 33.0 40.0 24.0 41.0 34 34.249000551510846 36.0 33.0 40.0 24.0 41.0 35 34.04065294662483 36.0 33.0 40.0 23.0 41.0 36 33.986564245736346 36.0 33.0 40.0 23.0 41.0 37 33.992939077842195 36.0 33.0 40.0 23.0 41.0 38 34.03603397729042 36.0 33.0 40.0 23.0 41.0 39 33.963742251800326 36.0 33.0 40.0 23.0 41.0 40 33.88848028414684 36.0 33.0 40.0 23.0 41.0 41 33.91418280077792 36.0 33.0 40.0 23.0 41.0 42 33.77672202006022 36.0 32.0 40.0 23.0 41.0 43 33.81087927717774 36.0 33.0 40.0 23.0 41.0 44 33.534395013708604 36.0 32.0 40.0 22.0 41.0 45 33.451195511915536 35.0 32.0 40.0 22.0 41.0 46 33.40298924158022 35.0 32.0 40.0 22.0 41.0 47 33.36552714145857 35.0 32.0 40.0 22.0 41.0 48 33.38932232774522 35.0 32.0 39.0 22.0 41.0 49 33.40584390395795 35.0 32.0 39.0 22.0 41.0 50 32.84018271105845 35.0 31.0 39.0 20.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 2.0 11 4.0 12 6.0 13 7.0 14 37.0 15 74.0 16 246.0 17 604.0 18 1325.0 19 2554.0 20 4440.0 21 7207.0 22 10672.0 23 15504.0 24 21805.0 25 29410.0 26 38792.0 27 46411.0 28 51647.0 29 58310.0 30 68178.0 31 83279.0 32 101680.0 33 126659.0 34 178684.0 35 199761.0 36 163590.0 37 197185.0 38 239102.0 39 247620.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 33.6355647972472 23.247369768233504 27.647951361492932 15.469114073026368 2 33.92630865080391 24.80115263128729 28.064196918400143 13.208341799508656 3 28.986618605178926 24.920426748012318 32.81763990299742 13.275314743811336 4 26.27619346683942 27.574803606722625 31.458601062384055 14.690401864053895 5 23.849176296116468 30.474220166297673 30.77182492037397 14.904778617211889 6 20.887378317971073 40.84790175190456 27.94012017131141 10.32459975881296 7 87.04931140308054 3.3844294501515995 8.154919133732145 1.411340013035711 8 85.30680099958043 5.7737116680168565 7.595597412912743 1.3238899194899714 9 83.33946416366942 4.8900804572526315 9.080507389981502 2.6899479890964457 10 44.024604244786374 30.226911090645693 14.995078623281147 10.753406041286787 11 35.254473439079156 24.749801429706118 26.073480244564717 13.922244886650006 12 33.078301346583665 23.04201773806665 28.17909061402421 15.700590301325473 13 22.33339226670959 32.00773698473978 28.14890265173805 17.509968096812585 14 17.255587016009645 34.14897126074325 30.933161634899818 17.662280088347288 15 17.405101871178676 25.194862768795566 40.842624136120264 16.55741122390549 16 20.284885700036153 22.94659844468663 39.175953071440446 17.592562783836772 17 20.3573473647545 22.183507978435664 30.54631239791112 26.91283225889872 18 22.573840441841995 24.48154021939049 33.4506899163234 19.49392942244412 19 26.987035536825882 25.671853683379997 27.581083969505936 19.760026810288185 20 29.2989479072934 24.789964085824586 27.65022073628018 18.260867270601832 21 24.401953773363346 27.18515723336825 29.691496969329133 18.721392023939266 22 23.20535994659053 24.23032570805813 29.592225016426575 22.972089328924767 23 21.85027931781538 28.39826999754591 28.75487849609061 20.9965721885481 24 20.951395797434554 24.767270337952127 35.44436205499804 18.83697180961529 25 20.033723964861633 26.23545027298468 33.410949469467674 20.319876292686015 26 19.151095501096425 31.656511654295056 29.422813549750764 19.769579294857756 27 19.69474270303648 30.035016980728784 30.610171548901064 19.66006876733367 28 17.831374898076042 28.448565675970222 35.718164761887174 18.001894664066562 29 19.785939903789064 25.77128396475608 34.723967500442 19.718808631012855 30 20.85814032652609 27.701255280914296 31.621784942434406 19.81881945012521 31 26.50492533493069 26.025770597874704 27.573167545829495 19.896136521365108 32 26.981599592568063 26.593853160896035 28.148374890159623 18.276172356376282 33 26.225158922205306 26.895680007599765 27.585200509817685 19.293960560377243 34 20.749790874474545 27.3476022472088 30.065099390699256 21.837507487617394 35 21.220131993170767 27.036909005987454 30.814256951279688 20.92870204956209 36 25.822265733232353 27.742315131716094 27.50788343857779 18.92753569647376 37 22.160128140511244 30.99739021899467 27.66146205790072 19.18101958259337 38 21.275177525800945 31.558822986127787 26.372351626429246 20.793647861642025 39 21.942057056304243 29.9870962294074 27.198667929776043 20.872178784512307 40 23.481537580582597 26.52339699017572 27.35298541530878 22.642080013932905 41 19.29184951406353 26.926659612253566 28.468251182845638 25.313239690837268 42 21.916882829013165 27.5948057705451 26.08662150786761 24.40168989257413 43 21.891708601722083 27.184418367158454 26.885810866083137 24.038062165036322 44 20.868167796516246 29.483083922007392 28.749125894885726 20.899622386590632 45 20.379671679522062 31.891101675906892 26.243525025134645 21.485701619436405 46 21.492562519955985 31.11640045493048 27.009201523119913 20.38183550199362 47 21.43255602848857 28.011684641346424 28.154180267522342 22.40157906264266 48 22.20456566541499 25.5635570074863 30.897854385302896 21.334022941795812 49 21.251322702455937 26.27439907747276 30.706382484648735 21.767895735422567 50 19.83412453589966 30.731187278834916 28.091746072794155 21.34294211247127 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 487.0 1 1438.5 2 2390.0 3 12311.5 4 22233.0 5 16767.0 6 11301.0 7 11238.5 8 11176.0 9 11237.0 10 11298.0 11 11337.5 12 11377.0 13 10982.5 14 10588.0 15 10060.0 16 9532.0 17 9001.0 18 8470.0 19 8321.0 20 8172.0 21 8435.0 22 8698.0 23 10536.0 24 12374.0 25 13592.0 26 14810.0 27 18859.5 28 22909.0 29 27365.5 30 31822.0 31 37485.5 32 43149.0 33 48309.5 34 53470.0 35 60357.0 36 67244.0 37 71147.0 38 75050.0 39 88956.0 40 102862.0 41 116197.5 42 129533.0 43 144041.0 44 158549.0 45 157239.5 46 155930.0 47 151101.0 48 146272.0 49 140198.0 50 134124.0 51 127259.0 52 120394.0 53 113800.0 54 107206.0 55 97350.5 56 87495.0 57 82429.0 58 77363.0 59 73789.0 60 70215.0 61 64466.5 62 58718.0 63 49947.0 64 41176.0 65 33030.0 66 24884.0 67 20657.5 68 16431.0 69 13727.0 70 11023.0 71 9033.5 72 7044.0 73 5502.5 74 3961.0 75 3273.5 76 2586.0 77 1932.0 78 1278.0 79 995.0 80 712.0 81 525.0 82 338.0 83 211.5 84 85.0 85 61.5 86 38.0 87 26.0 88 14.0 89 10.0 90 6.0 91 5.0 92 4.0 93 3.5 94 3.0 95 1.5 96 0.0 97 0.5 98 1.0 99 0.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 1894795.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 23.66224850063098 #Duplication Level Percentage of deduplicated Percentage of total 1 77.42687721465079 18.320940092809096 2 5.9110886436741295 2.7973929679175 3 2.2694137107542875 1.6109829352382108 4 1.369852162035289 1.2965512906882253 5 1.0215816274720908 1.208645916646182 6 0.7943595437556846 1.1277799753916917 7 0.6813376536891016 1.1285386612099861 8 0.5801909247296657 1.0982897471011388 9 0.5119481950324839 1.0902460869277317 >10 8.008011313181859 45.838426582585235 >50 1.3276785573239307 20.41114248870312 >100 0.0960852860273425 3.2471388747967387 >500 0.0011251197666949982 0.16394359351003043 >1k 2.2502395333899965E-4 0.06117934035174569 >5k 0.0 0.0 >10k+ 2.2502395333899965E-4 0.5988014461233525 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 11246 0.5935206711016231 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.006491467414680744 0.0 2 0.0 0.0 0.0 0.025965869658722975 0.0 3 0.0 0.0 0.0 0.04475418185080708 0.0 4 0.0 0.0 0.0 0.06443968872622104 0.0 5 0.0 0.0 0.0 0.10845500436722706 0.0 6 0.0 0.0 0.0 0.17822508503558432 0.0 7 0.0 0.0 0.0 0.22904852503832868 0.0 8 0.0 0.0 0.0 0.372652450528949 0.0 9 0.0 0.0 0.0 0.4617386049678197 0.0 10 0.0 0.0 0.0 0.589668011579089 0.0 11 0.0 0.0 0.0 0.6795458083856037 0.0 12 0.0 0.0 0.0 0.7648320794597833 0.0 13 0.0 0.0 0.0 0.8091640520478469 0.0 14 0.0 0.0 0.0 0.8340216223918683 0.0 15 0.0 0.0 0.0 0.8559765040545283 0.0 16 0.0 0.0 0.0 0.8918115152298798 0.0 17 0.0 0.0 0.0 0.9342435461355978 0.0 18 0.0 0.0 0.0 1.0058607923284577 0.0 19 0.0 0.0 0.0 1.0452318060792856 0.0 20 0.0 0.0 0.0 1.0859749999340298 0.0 21 0.0 0.0 0.0 1.1332624373612976 0.0 22 0.0 0.0 0.0 1.1806554271042513 0.0 23 0.0 0.0 0.0 1.2359120643658021 0.0 24 0.0 0.0 0.0 1.279135737639164 0.0 25 0.0 0.0 0.0 1.3187178560213637 0.0 26 0.0 0.0 0.0 1.357033346615333 0.0 27 5.2776157842932874E-5 0.0 0.0 1.4005209006779098 0.0 28 5.2776157842932874E-5 0.0 0.0 1.4448528732659733 0.0 29 5.2776157842932874E-5 0.0 0.0 1.4911375636942255 0.0 30 5.2776157842932874E-5 0.0 0.0 1.559271583469452 0.0 31 5.2776157842932874E-5 0.0 0.0 1.6193836272525524 0.0 32 5.2776157842932874E-5 0.0 0.0 1.681131731928784 0.0 33 5.2776157842932874E-5 0.0 0.0 1.7392910578716958 0.0 34 5.2776157842932874E-5 0.0 0.0 1.795022680553833 0.0 35 5.2776157842932874E-5 0.0 0.0 1.8666399267466929 0.0 36 5.2776157842932874E-5 0.0 0.0 1.9303935254209559 0.0 37 5.2776157842932874E-5 0.0 0.0 1.9988442021432398 0.0 38 5.2776157842932874E-5 0.0 0.0 2.0723086138606024 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CTATACG 50 2.7284841E-11 44.0 1 GTACGTT 20 7.8577764E-4 44.0 9 CGTTTTT 9445 0.0 42.48597 1 CGCGTAA 40 4.126432E-7 38.5 31 CGTATGG 155 0.0 38.32258 2 GACCGAT 525 0.0 37.714283 9 ATATACG 100 0.0 37.399998 1 GCGTAAG 65 1.0913936E-11 37.230766 1 TACGGGA 455 0.0 36.747253 4 GGCACCG 500 0.0 36.52 8 TTTAGCG 175 0.0 36.45714 1 TAATGCG 115 0.0 36.347828 1 TAGGGAT 2300 0.0 36.25217 5 ACGGGAT 610 0.0 36.065575 5 CATACGA 385 0.0 36.0 18 GCGTAAC 55 3.426976E-9 36.0 32 AAATGCG 110 0.0 36.0 1 CGGTCTA 135 0.0 35.851852 31 ACGGGAC 375 0.0 35.786667 5 GTAGGGA 2400 0.0 35.475 4 >>END_MODULE