##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546550_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 2133432 Sequences flagged as poor quality 0 Sequence length 50 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 30.64499079417577 31.0 30.0 31.0 28.0 34.0 2 30.970173410729753 31.0 31.0 33.0 28.0 34.0 3 31.1097672670139 31.0 31.0 34.0 28.0 34.0 4 34.93986965602841 35.0 35.0 37.0 32.0 37.0 5 34.74132993224063 35.0 35.0 37.0 32.0 37.0 6 34.778134480030296 35.0 35.0 37.0 32.0 37.0 7 35.43331917773803 35.0 35.0 37.0 35.0 37.0 8 34.39955573929706 36.0 35.0 37.0 33.0 37.0 9 36.526198163334946 39.0 37.0 39.0 32.0 39.0 10 35.96012856280397 38.0 35.0 39.0 30.0 39.0 11 35.62845593391306 37.0 35.0 39.0 30.0 39.0 12 35.1700804150308 37.0 34.0 39.0 30.0 39.0 13 34.96685200184491 37.0 34.0 39.0 27.0 39.0 14 35.857445186910105 38.0 34.0 40.0 27.0 41.0 15 36.09489451737857 38.0 34.0 40.0 30.0 41.0 16 36.19230094983107 38.0 34.0 40.0 30.0 41.0 17 36.08465092864455 38.0 34.0 40.0 30.0 41.0 18 35.97906799935503 38.0 34.0 40.0 29.0 41.0 19 35.961762081003755 37.0 34.0 40.0 29.0 41.0 20 35.7846502724249 37.0 34.0 40.0 29.0 41.0 21 35.621071587939056 37.0 34.0 40.0 29.0 41.0 22 35.585888840141145 37.0 34.0 40.0 29.0 41.0 23 35.51964112284807 37.0 34.0 40.0 29.0 41.0 24 35.45284030613584 37.0 34.0 40.0 29.0 41.0 25 35.26402528883039 37.0 34.0 40.0 27.0 41.0 26 35.09455281443233 37.0 33.0 40.0 27.0 41.0 27 34.89762082878667 36.0 33.0 40.0 27.0 41.0 28 34.903351501243066 36.0 33.0 40.0 27.0 41.0 29 34.75585113563498 36.0 33.0 40.0 26.0 41.0 30 34.74731043689229 36.0 33.0 40.0 26.0 41.0 31 34.636090112082314 36.0 33.0 40.0 25.0 41.0 32 34.35677537413895 36.0 33.0 40.0 24.0 41.0 33 34.159182012831906 36.0 33.0 40.0 23.0 41.0 34 33.98418276279722 36.0 33.0 40.0 23.0 41.0 35 33.76946769336918 36.0 32.0 40.0 23.0 41.0 36 33.76005937850375 36.0 32.0 40.0 22.0 41.0 37 33.794075461509905 36.0 32.0 40.0 23.0 41.0 38 33.81630958943149 36.0 32.0 40.0 23.0 41.0 39 33.72927658345802 36.0 32.0 40.0 22.0 41.0 40 33.66113098519193 36.0 32.0 40.0 22.0 41.0 41 33.69321825115588 36.0 32.0 40.0 22.0 41.0 42 33.54051218881127 36.0 32.0 40.0 21.0 41.0 43 33.593790662181874 36.0 32.0 40.0 22.0 41.0 44 33.30799013045647 36.0 32.0 40.0 21.0 41.0 45 33.23657468342089 35.0 31.0 40.0 20.0 41.0 46 33.17892063117081 35.0 31.0 39.0 20.0 41.0 47 33.13458080688768 35.0 31.0 39.0 20.0 41.0 48 33.145802631628285 35.0 31.0 39.0 20.0 41.0 49 33.15925232208011 35.0 31.0 39.0 20.0 41.0 50 32.61716801847915 35.0 31.0 39.0 19.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 1.0 10 4.0 11 2.0 12 2.0 13 11.0 14 40.0 15 116.0 16 327.0 17 832.0 18 1820.0 19 3645.0 20 5917.0 21 9112.0 22 13638.0 23 19146.0 24 26587.0 25 36525.0 26 47124.0 27 55697.0 28 62368.0 29 70141.0 30 81787.0 31 97076.0 32 116648.0 33 142667.0 34 196529.0 35 210477.0 36 184736.0 37 218567.0 38 264227.0 39 267663.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 32.84955883290398 23.76424465368477 28.24125634189419 15.144940171517069 2 34.11868763569685 24.60247151069263 28.328861665147986 12.949979188462535 3 29.110044285451796 25.035810843748475 32.9306488324915 12.923496038308228 4 26.427699593893784 27.212632040768113 32.148013154391606 14.211655210946494 5 23.35410737253402 30.91605450747903 31.14245028667424 14.58738783331271 6 20.76396154177869 40.67638434222417 28.688329414764567 9.871324701232568 7 86.44967357759704 3.4795578204508044 8.64531890400069 1.4254496979514697 8 85.21166833533948 5.32442562031506 8.032925352202462 1.4309806921429884 9 83.06189276245973 4.694782866292433 9.632882604179557 2.610441767068273 10 44.28390499439401 29.344736555934286 15.54443731977396 10.826921129897741 11 34.191902999486274 24.483180152917928 26.90238076488962 14.422536082706175 12 31.09417126957878 22.803398467820863 29.608114999681263 16.49431526291909 13 23.478976597332373 27.90044397946595 30.106560696567787 18.514018726633893 14 18.239390803175354 30.51819790834674 32.556275522257096 18.68613576622081 15 18.47886410253526 24.8238987696819 39.858875277018434 16.838361850764404 16 22.762103502713 22.81019502847993 37.00244488692398 17.42525658188309 17 22.153647268813817 22.576487087472206 31.118638887951434 24.151226755762544 18 23.276907818013417 24.63561060300961 33.33398955298318 18.753492025993797 19 26.657095234345412 25.872256533135342 28.75774807915134 18.712900153367904 20 28.314612324180004 25.45705698611439 28.370859722737823 17.857470966967778 21 25.015561780267664 26.512867529876743 30.205696736525933 18.26587395332966 22 23.423104181431608 23.63492250983392 31.150840523625785 21.791132785108687 23 21.928376437589762 26.49543083632382 30.911882825419323 20.664309900667092 24 22.187301962284245 23.84538152610442 34.453969003933565 19.51334750767777 25 21.54326924879724 25.359280258288052 32.479966551546994 20.617483941367713 26 20.05201009453313 29.171635186872606 29.931068813067398 20.845285905526868 27 19.701729420014324 28.29000408731096 31.934038675711246 20.074227816963468 28 18.65009055831168 27.45435523607033 34.57063548310891 19.324918722509086 29 20.802116027133746 26.004250428417684 33.45923376043858 19.73439978400999 30 21.854411108486232 26.532460373707718 31.859463999790012 19.75366451801604 31 26.427465229733127 25.106635693099193 28.985175060653447 19.480724016514237 32 27.355453560272835 25.836445689386867 28.697938345351524 18.11016240498877 33 26.24962970462616 26.128791543391117 28.377328173571968 19.24425057841075 34 21.778289629104655 26.89759973601221 30.355502308018256 20.96860832686488 35 21.380058047315313 26.821243892469976 31.074250315922892 20.724447744291826 36 25.304064062037128 27.877991892874952 27.661251917098834 19.156692127989082 37 22.928361438283478 30.16829221648499 27.401623299922377 19.501723045309156 38 22.22034730893696 30.779092091990744 25.978329752248957 21.022230846823334 39 22.83400642720274 29.318628388437034 27.072997873848337 20.774367310511888 40 23.662671226455775 26.007812763659683 27.562069004308547 22.767447005575992 41 20.37163593683792 26.570286749237848 28.181071625437326 24.877005688486907 42 21.480740890733806 27.241036977039812 26.766637043036763 24.511585089189623 43 21.23358044690433 26.42873079620068 27.862195748446634 24.47549300844836 44 20.856910367895484 27.811151234255416 29.0877328173572 22.2442055804919 45 21.230346221487256 29.641254091998242 27.229084404846276 21.899315281668223 46 21.771868051102636 29.741655698423948 27.42023181427859 21.066244436194825 47 21.33201339438051 27.37439018445397 29.01461119923204 22.278985221933485 48 21.782461311164358 25.590878921849864 30.992316605357 21.634343161628774 49 21.984014489329866 25.473556223024683 30.633880058047314 21.908549229598133 50 20.370557861698895 28.833588321540127 29.051500118119538 21.74435369864144 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 550.0 1 1690.0 2 2830.0 3 16346.5 4 29863.0 5 21837.0 6 13811.0 7 13699.5 8 13588.0 9 13643.0 10 13698.0 11 13463.0 12 13228.0 13 12896.5 14 12565.0 15 11800.5 16 11036.0 17 10503.0 18 9970.0 19 9883.0 20 9796.0 21 10503.0 22 11210.0 23 11884.5 24 12559.0 25 15445.5 26 18332.0 27 21438.5 28 24545.0 29 28839.0 30 33133.0 31 39513.0 32 45893.0 33 51822.5 34 57752.0 35 63908.0 36 70064.0 37 77072.0 38 84080.0 39 97269.0 40 110458.0 41 124292.0 42 138126.0 43 152109.0 44 166092.0 45 165920.0 46 165748.0 47 160915.5 48 156083.0 49 150457.5 50 144832.0 51 138360.0 52 131888.0 53 123121.0 54 114354.0 55 109325.0 56 104296.0 57 101990.0 58 99684.0 59 96501.0 60 93318.0 61 86870.0 62 80422.0 63 67765.5 64 55109.0 65 44739.0 66 34369.0 67 27411.5 68 20454.0 69 16468.5 70 12483.0 71 10145.5 72 7808.0 73 6057.5 74 4307.0 75 3396.0 76 2485.0 77 1882.5 78 1280.0 79 1039.5 80 799.0 81 556.5 82 314.0 83 224.0 84 134.0 85 89.5 86 45.0 87 32.5 88 20.0 89 13.5 90 7.0 91 8.5 92 10.0 93 6.0 94 2.0 95 2.0 96 2.0 97 1.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 2133432.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 24.564008270342864 #Duplication Level Percentage of deduplicated Percentage of total 1 78.68878557388027 19.32911979620031 2 5.161901793236634 2.5359399667952465 3 2.0052875333682674 1.4777369866222068 4 1.2631082205630881 1.2410800310499899 5 0.9851517584131189 1.2099637970601331 6 0.8328899629973623 1.227546956361166 7 0.66502601659057 1.1434993200066752 8 0.5900935981384773 1.1596051219959946 9 0.5180019716021369 1.145178424303992 >10 8.01658067487804 46.63076992925043 >50 1.1918263766697959 19.105013842336525 >100 0.08017607673475767 2.872077380574761 >500 9.753691062281992E-4 0.1719296031075815 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 1.9507382124563983E-4 0.7505388443350194 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 15663 0.7341691696759025 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.00932769359417127 0.0 2 0.0 0.0 0.0 0.03693579171963297 0.0 3 0.0 0.0 0.0 0.06309083204901773 0.0 4 0.0 0.0 0.0 0.09487061223418417 0.0 5 0.0 0.0 0.0 0.17099209161576276 0.0 6 0.0 0.0 0.0 0.28747107946257483 0.0 7 0.0 0.0 0.0 0.37095159348880113 0.0 8 0.0 0.0 0.0 0.5742859392753085 0.0 9 0.0 0.0 0.0 0.6971396322920065 0.0 10 0.0 0.0 0.0 0.8561791517142332 0.0 11 0.0 0.0 0.0 0.9606118217032462 0.0 12 0.0 0.0 0.0 1.0545918501269316 0.0 13 0.0 0.0 0.0 1.104417670682731 0.0 14 0.0 0.0 0.0 1.126307283288148 0.0 15 0.0 0.0 0.0 1.1511967571499817 0.0 16 0.0 0.0 0.0 1.199382028581178 0.0 17 0.0 0.0 0.0 1.2535670225252082 0.0 18 0.0 0.0 0.0 1.333625819805834 0.0 19 0.0 0.0 0.0 1.3768894438632213 0.0 20 0.0 0.0 0.0 1.4241372586517873 0.0 21 0.0 0.0 0.0 1.4842751022765197 0.0 22 0.0 0.0 0.0 1.545866003697329 0.0 23 0.0 0.0 0.0 1.6128941536453938 0.0 24 0.0 0.0 0.0 1.667641621575002 0.0 25 0.0 0.0 0.0 1.7162956213275136 0.0 26 0.0 0.0 0.0 1.7649027482478936 0.0 27 0.0 0.0 0.0 1.8167909734174794 0.0 28 0.0 0.0 0.0 1.8730852448074276 0.0 29 0.0 0.0 0.0 1.9391759381128624 0.0 30 0.0 0.0 0.0 2.0265000243738727 0.0 31 0.0 0.0 0.0 2.0997153881632973 0.0 32 0.0 0.0 0.0 2.174571301077325 0.0 33 0.0 0.0 0.0 2.249802196648405 0.0 34 0.0 0.0 0.0 2.3305640864110035 0.0 35 0.0 0.0 0.0 2.4184975194897236 0.0 36 0.0 0.0 0.0 2.5031967271513693 0.0 37 0.0 0.0 0.0 2.5944112584792953 0.0 38 0.0 0.0 0.0 2.700625096089306 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGTTTTT 12545 0.0 43.05301 1 CGTTAGG 240 0.0 40.333336 2 GCGTAAG 170 0.0 40.11765 1 CGATTAC 40 4.1267594E-7 38.5 10 ACGGGAT 815 0.0 38.06135 5 GCGATGT 220 0.0 38.0 9 GGGCGAT 2350 0.0 37.16596 7 GCGTTAG 160 0.0 37.125 1 CGACCCG 255 0.0 37.09804 32 AGGGATC 2015 0.0 36.684864 6 GTTTTTT 14720 0.0 36.64674 2 CGGGATC 500 0.0 36.52 6 TGCGGGA 1120 0.0 36.142857 4 GTAGGGC 950 0.0 36.126316 4 TAGGGAT 2435 0.0 36.049282 5 GCGGGAT 935 0.0 36.0 5 TGGGCGA 840 0.0 35.880955 6 CGTAAGG 325 0.0 35.876923 2 CGGGATT 860 0.0 35.813953 6 AGGGCGA 1305 0.0 35.739464 6 >>END_MODULE