##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546549_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 2055156 Sequences flagged as poor quality 0 Sequence length 50 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 30.626175823149193 31.0 30.0 31.0 28.0 33.0 2 30.93713421268264 31.0 31.0 33.0 28.0 34.0 3 31.120168006710927 31.0 31.0 34.0 28.0 34.0 4 34.92699386323958 35.0 35.0 37.0 32.0 37.0 5 34.70494843213849 35.0 35.0 37.0 32.0 37.0 6 34.75255747008986 35.0 35.0 37.0 32.0 37.0 7 35.42046637822141 35.0 35.0 37.0 35.0 37.0 8 34.39879454406381 35.0 35.0 37.0 33.0 37.0 9 36.55265488361954 39.0 37.0 39.0 32.0 39.0 10 35.97477223140238 38.0 35.0 39.0 30.0 39.0 11 35.54508222246876 37.0 35.0 39.0 30.0 39.0 12 34.597673363968475 35.0 33.0 39.0 27.0 39.0 13 33.97921033731746 35.0 33.0 39.0 24.0 39.0 14 34.847848533152714 37.0 33.0 40.0 25.0 41.0 15 35.3920398256872 37.0 33.0 40.0 27.0 41.0 16 35.64702582188408 37.0 34.0 40.0 29.0 41.0 17 35.612791924311345 37.0 34.0 40.0 29.0 41.0 18 35.55227243090062 36.0 34.0 40.0 29.0 41.0 19 35.5594699380485 36.0 34.0 40.0 29.0 41.0 20 35.38134817989486 36.0 34.0 40.0 29.0 41.0 21 35.1473605896584 36.0 33.0 40.0 28.0 41.0 22 35.10369723758196 36.0 33.0 40.0 27.0 41.0 23 35.10416192250126 36.0 33.0 40.0 29.0 41.0 24 35.0473107637571 36.0 33.0 40.0 28.0 41.0 25 34.901363205518216 35.0 33.0 40.0 27.0 41.0 26 34.70479661884548 35.0 33.0 40.0 27.0 41.0 27 34.496291279104845 35.0 33.0 39.0 26.0 41.0 28 34.58614333899714 36.0 33.0 39.0 26.0 41.0 29 34.54870335877179 36.0 33.0 39.0 26.0 41.0 30 34.594723222957285 36.0 33.0 39.0 26.0 41.0 31 34.4885006296359 35.0 33.0 39.0 26.0 41.0 32 34.26131446955851 35.0 33.0 39.0 25.0 41.0 33 34.125551539639815 35.0 33.0 39.0 24.0 41.0 34 34.10898491404059 35.0 33.0 39.0 24.0 41.0 35 33.922364044383976 35.0 32.0 39.0 24.0 41.0 36 33.83275430186322 35.0 32.0 39.0 23.0 41.0 37 33.84604769662254 35.0 32.0 40.0 23.0 41.0 38 33.938467931388175 35.0 32.0 40.0 24.0 41.0 39 33.90913633806874 35.0 32.0 40.0 23.0 41.0 40 33.79754967506116 35.0 32.0 39.0 23.0 41.0 41 33.89433259567644 35.0 33.0 39.0 23.0 41.0 42 33.74169308801862 35.0 32.0 39.0 23.0 41.0 43 33.80061708210958 35.0 32.0 39.0 23.0 41.0 44 33.52449546409129 35.0 32.0 39.0 23.0 41.0 45 33.45420542284868 35.0 32.0 39.0 23.0 41.0 46 33.4240539404308 35.0 32.0 39.0 23.0 41.0 47 33.37830656164301 35.0 32.0 39.0 23.0 41.0 48 33.456083139187484 35.0 32.0 39.0 23.0 41.0 49 33.503546689399734 35.0 32.0 39.0 24.0 41.0 50 32.872894807012216 35.0 31.0 38.0 23.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 1.0 10 0.0 11 2.0 12 8.0 13 9.0 14 26.0 15 104.0 16 262.0 17 728.0 18 1525.0 19 3100.0 20 5246.0 21 8333.0 22 12360.0 23 17530.0 24 24057.0 25 31985.0 26 40973.0 27 49984.0 28 59262.0 29 69340.0 30 83119.0 31 101036.0 32 122178.0 33 152406.0 34 225069.0 35 246068.0 36 157853.0 37 187155.0 38 225535.0 39 229902.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 35.24077977535525 23.6487157179309 29.104895200169718 12.005609306544127 2 30.354921962128422 25.60287394241605 30.75104760903795 13.291156486417577 3 29.223718296810556 26.197135399940443 31.22930814011199 13.349838163137006 4 26.2582499819965 28.153483239228557 30.601180640301756 14.987086138473185 5 22.90731214564734 32.31234027976465 29.75010169544307 15.03024587914494 6 21.080978767548547 41.61708405590622 26.940047373532718 10.36188980301252 7 90.01725416464735 3.6609386343421133 4.940695499514392 1.3811117014961394 8 88.97324582659418 5.34718532315795 4.27106263466131 1.408506215586554 9 88.07501717631168 4.0881081533469965 5.661711325077025 2.175163345264301 10 53.69748087249825 25.969658750965863 10.756409732399876 9.576450644136017 11 46.353804771997844 21.169974444762342 20.629042272216804 11.847178511023007 12 41.953311573428 22.716669683469284 21.390590300687638 13.939428442415078 13 22.23680343487307 39.65134520201873 22.385940532008274 15.725910831099926 14 15.746201261607393 40.74663918456798 27.067774903705605 16.439384650119017 15 15.260836646950402 23.572225174147363 46.36776964863008 14.799168530272155 16 18.16290344869197 19.814310933087317 43.89759220224645 18.125193415974262 17 18.477575424931246 20.04013320643299 27.320651084394566 34.161640284241194 18 22.634729431731703 24.254119881897044 33.173588768930436 19.937561917440817 19 30.34519034078192 24.963311787523672 24.386859197063384 20.304638674631025 20 32.50595088645339 24.699390216606428 23.94523822035894 18.849420676581243 21 23.721508245602767 28.914982609592656 27.032546434431254 20.330962710373324 22 22.77432953994733 25.112740833299274 26.052718139158294 26.060211487595105 23 20.78377505162625 30.43778671789392 25.823733088875006 22.954705141604823 24 20.775843780228847 23.558746878582454 37.40820648164908 18.257202859539618 25 18.75263970229024 25.484099503881946 34.51616324989441 21.247097543933403 26 18.04155013050104 35.27352668118625 26.251973086228002 20.432950102084707 27 18.662573546728325 33.54981325018636 28.50260515503446 19.28500804805085 28 16.086272769561045 28.702492657491696 37.48907625503855 17.72215831790871 29 17.32554608993186 25.70359622335239 36.13842452835697 20.832433158358782 30 20.281818022573468 29.907559328829542 30.454817055250306 19.355805593346684 31 29.81048640589814 25.953698891957593 24.344915909059946 19.89089879308432 32 31.764741946596754 25.87331569963545 24.901418675759892 17.460523678007895 33 28.64624388610889 26.740743768356275 24.89329277193556 19.719719573599278 34 20.278120006461798 26.957758924383356 29.0616381432845 23.702482925870346 35 20.293058045228683 25.785682449410167 31.504810340431575 22.41644916492957 36 29.911646609795074 26.213241233268906 25.123883539741023 18.751228617194997 37 21.52143194969141 32.77488424236408 26.92321166860326 18.78047213934125 38 20.74859524045863 33.508015936503114 24.027275788309986 21.716113034728263 39 21.413216320318263 31.94920482921978 25.881587577779985 20.755991272681975 40 25.07979929504135 26.26861415873053 24.723330005118832 23.92825654110929 41 18.667731306041972 24.536969456333242 26.788720661594546 30.00657857603024 42 22.18264696207976 26.061233307836485 23.69450299636621 28.061616733717536 43 21.597143963767227 26.762347967745516 25.107972338839485 26.532535729647773 44 20.136378941549935 29.770440784057268 28.496036310625566 21.597143963767227 45 18.597614974240397 35.86146258483541 23.00929953735872 22.53162290356547 46 21.769004396746524 33.48149726833389 24.715058126974302 20.034440207945284 47 21.12905297700029 27.164117955036016 27.127964981733747 24.578864086229952 48 22.51697681343898 23.059903968360555 31.85947928040499 22.563639937795475 49 20.969649019344516 24.061239146809292 32.11026316250445 22.85884867134174 50 19.470006169847935 33.19018118332623 26.09149865022412 21.248313996601716 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 584.0 1 1449.5 2 2315.0 3 5941.0 4 9567.0 5 7448.5 6 5330.0 7 5479.0 8 5628.0 9 6040.5 10 6453.0 11 6404.5 12 6356.0 13 6120.5 14 5885.0 15 5767.0 16 5649.0 17 5321.0 18 4993.0 19 5321.5 20 5650.0 21 5887.0 22 6124.0 23 7736.5 24 9349.0 25 11296.5 26 13244.0 27 16615.5 28 19987.0 29 22541.0 30 25095.0 31 32027.0 32 38959.0 33 44439.0 34 49919.0 35 54716.0 36 59513.0 37 63032.0 38 66551.0 39 86849.0 40 107147.0 41 138563.0 42 169979.0 43 193873.0 44 217767.0 45 215529.5 46 213292.0 47 194242.5 48 175193.0 49 163230.0 50 151267.0 51 145412.5 52 139558.0 53 127682.0 54 115806.0 55 104802.5 56 93799.0 57 87439.0 58 81079.0 59 77926.0 60 74773.0 61 68924.5 62 63076.0 63 52296.5 64 41517.0 65 33898.0 66 26279.0 67 20940.5 68 15602.0 69 12669.5 70 9737.0 71 7724.5 72 5712.0 73 4240.0 74 2768.0 75 2124.5 76 1481.0 77 1405.0 78 1329.0 79 888.5 80 448.0 81 377.5 82 307.0 83 180.5 84 54.0 85 39.0 86 24.0 87 14.5 88 5.0 89 3.5 90 2.0 91 2.0 92 2.0 93 2.0 94 2.0 95 1.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 2055156.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 20.10293426389631 #Duplication Level Percentage of deduplicated Percentage of total 1 79.45068513045092 15.97191900398979 2 7.2258057298696885 2.9051979518251128 3 2.652458877015588 1.5996661932699778 4 1.4575284169017044 1.1720239181094327 5 0.8722763775819866 0.8767657339240138 6 0.5793518537038533 0.6988003338405021 7 0.4084208688562595 0.5747320515034559 8 0.2987964767052118 0.4805348743590958 9 0.26069984793196993 0.47167487150257387 >10 3.9289204750208473 20.250675862711866 >50 1.9133306468072289 27.849898030117892 >100 0.9498122834962921 26.62393915683085 >500 0.0014347617438344785 0.18464276606724406 >1k 4.7825391461149276E-4 0.33952925194817624 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 4539 0.22085914645895494 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATA 2524 0.12281306139290643 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.011045390228284373 0.0 2 0.0 0.0 0.0 0.04505740683432304 0.0 3 0.0 0.0 0.0 0.06559112787545082 0.0 4 0.0 0.0 0.0 0.11108645767036662 0.0 5 0.0 0.0 0.0 0.20572647526513801 0.0 6 0.0 0.0 0.0 0.31116859255453116 0.0 7 0.0 0.0 0.0 0.3865399998832205 0.0 8 0.0 0.0 0.0 0.596159123686961 0.0 9 0.0 0.0 0.0 0.6832571347381902 0.0 10 0.0 0.0 0.0 0.8151692620900798 0.0 11 0.0 0.0 0.0 0.9128747404090006 0.0 12 0.0 0.0 0.0 1.0156406618281046 0.0 13 0.0 0.0 0.0 1.0535453269727457 0.0 14 0.0 0.0 0.0 1.067607519818447 0.0 15 0.0 0.0 0.0 1.0885791638201674 0.0 16 0.0 0.0 0.0 1.139378227248929 0.0 17 0.0 0.0 0.0 1.1957729729519315 0.0 18 0.0 0.0 0.0 1.2989281592248958 0.0 19 0.0 0.0 0.0 1.342623139070708 0.0 20 4.865810673253028E-5 0.0 0.0 1.3898215026012624 0.0 21 4.865810673253028E-5 0.0 0.0 1.4513740076179131 0.0 22 4.865810673253028E-5 0.0 0.0 1.5193007246165255 0.0 23 9.731621346506056E-5 0.0 0.0 1.5915093550076005 0.0 24 9.731621346506056E-5 0.0 0.0 1.6431842643575476 0.0 25 9.731621346506056E-5 0.0 0.0 1.6902366535679043 0.0 26 9.731621346506056E-5 0.0 0.0 1.73977060622162 0.0 27 9.731621346506056E-5 0.0 0.0 1.7895478494089987 0.0 28 9.731621346506056E-5 0.0 0.0 1.8444828519100254 0.0 29 9.731621346506056E-5 0.0 0.0 1.9029212380957943 0.0 30 9.731621346506056E-5 0.0 0.0 1.9845208830862475 0.0 31 9.731621346506056E-5 0.0 0.0 2.061643982257308 0.0 32 9.731621346506056E-5 0.0 0.0 2.130251912750176 0.0 33 1.4597432019759085E-4 0.0 0.0 2.198713868922846 0.0 34 1.4597432019759085E-4 0.0 0.0 2.272333584409164 0.0 35 1.4597432019759085E-4 0.0 0.0 2.3659031236558197 0.0 36 1.4597432019759085E-4 0.0 0.0 2.444826572775984 0.0 37 1.4597432019759085E-4 0.0 0.0 2.5262802434462395 0.0 38 1.4597432019759085E-4 0.0 0.0 2.6075879397962978 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TAACGCG 20 7.857931E-4 44.000004 1 TTTCGCG 25 4.444068E-5 44.0 1 ATATCGT 25 4.444068E-5 44.0 26 CGCGTAA 35 1.4468242E-7 44.0 31 GCTAACG 25 4.444068E-5 44.0 1 CGATCGA 25 4.444068E-5 44.0 41 GCGTATC 25 4.444068E-5 44.0 27 CGTTTTT 4520 0.0 41.128315 1 ACGGGTA 140 0.0 40.857143 5 CGGTCTA 165 0.0 40.0 31 CGGGTAT 245 0.0 39.510204 6 ACGGGAT 770 0.0 39.42857 5 CGTATCT 45 2.352499E-8 39.11111 28 ACCGGGT 85 0.0 38.823532 4 TGCGTAG 170 0.0 38.823532 1 TATGGGC 445 0.0 38.5618 4 TGCGAAC 40 4.1266503E-7 38.500004 11 AACGGGT 120 0.0 38.5 4 GTAGTAG 450 0.0 38.133335 1 TCGATAG 75 0.0 38.13333 1 >>END_MODULE