##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546548_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 331384 Sequences flagged as poor quality 0 Sequence length 50 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 30.628219829563285 31.0 30.0 31.0 28.0 33.0 2 30.94471972092799 31.0 31.0 33.0 28.0 34.0 3 31.09821838109263 31.0 31.0 34.0 28.0 34.0 4 34.92106740216788 35.0 35.0 37.0 32.0 37.0 5 34.707354609757864 35.0 35.0 37.0 32.0 37.0 6 34.72487205175869 35.0 35.0 37.0 32.0 37.0 7 35.42165584337204 35.0 35.0 37.0 35.0 37.0 8 34.40852304275403 35.0 35.0 37.0 33.0 37.0 9 36.548756125823815 39.0 37.0 39.0 32.0 39.0 10 35.97805868720276 38.0 35.0 39.0 30.0 39.0 11 35.62769475895034 37.0 35.0 39.0 30.0 39.0 12 34.72576527533013 37.0 33.0 39.0 29.0 39.0 13 34.10318241073799 37.0 33.0 39.0 25.0 39.0 14 34.956621321488065 37.0 33.0 40.0 25.0 41.0 15 35.4640477512493 37.0 33.0 40.0 27.0 41.0 16 35.73078362262511 37.0 34.0 40.0 30.0 41.0 17 35.654895830818624 37.0 34.0 40.0 29.0 41.0 18 35.594856722110904 37.0 34.0 40.0 29.0 41.0 19 35.58862829828839 37.0 34.0 40.0 29.0 41.0 20 35.36442012891389 36.0 34.0 40.0 29.0 41.0 21 35.13591784757261 36.0 33.0 40.0 28.0 41.0 22 35.05688566738286 36.0 33.0 40.0 27.0 41.0 23 35.01602974193081 36.0 33.0 40.0 28.0 41.0 24 34.97755775776742 36.0 33.0 40.0 27.0 41.0 25 34.829518021389084 35.0 33.0 39.0 27.0 41.0 26 34.6155698524974 35.0 33.0 39.0 27.0 41.0 27 34.39712840692369 35.0 33.0 39.0 25.0 41.0 28 34.49568476450281 36.0 33.0 39.0 25.0 41.0 29 34.416553001955435 36.0 33.0 39.0 25.0 41.0 30 34.45563153320619 36.0 33.0 39.0 26.0 41.0 31 34.3368629746759 35.0 33.0 39.0 25.0 41.0 32 34.024334307027495 35.0 33.0 39.0 24.0 41.0 33 33.833824203944665 35.0 32.0 39.0 23.0 41.0 34 33.74622492335176 35.0 32.0 39.0 23.0 41.0 35 33.51614441252444 35.0 32.0 39.0 23.0 41.0 36 33.40354694251985 35.0 32.0 39.0 22.0 41.0 37 33.406296019119814 35.0 32.0 39.0 23.0 41.0 38 33.471338386886515 35.0 32.0 39.0 23.0 41.0 39 33.40193250126741 35.0 32.0 39.0 23.0 41.0 40 33.319873620935226 35.0 32.0 39.0 22.0 41.0 41 33.41985732564034 35.0 32.0 39.0 23.0 41.0 42 33.25221797069261 35.0 32.0 39.0 22.0 41.0 43 33.283305772155565 35.0 32.0 39.0 23.0 41.0 44 32.94384460323975 35.0 31.0 39.0 21.0 41.0 45 32.89019687130338 35.0 31.0 39.0 21.0 41.0 46 32.88983173599208 35.0 31.0 39.0 21.0 41.0 47 32.826865509499555 35.0 31.0 39.0 21.0 40.0 48 32.91994785505637 35.0 31.0 39.0 22.0 40.0 49 32.97525529295319 35.0 31.0 39.0 22.0 40.0 50 32.356809622673396 35.0 31.0 38.0 20.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 1.0 11 0.0 12 1.0 13 3.0 14 5.0 15 13.0 16 43.0 17 113.0 18 286.0 19 565.0 20 928.0 21 1569.0 22 2359.0 23 3332.0 24 4532.0 25 5877.0 26 7375.0 27 8963.0 28 10066.0 29 11512.0 30 13443.0 31 16417.0 32 19627.0 33 24330.0 34 35449.0 35 38686.0 36 25568.0 37 29941.0 38 34980.0 39 35400.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 35.30466166139584 23.30800521449436 27.820293073896146 13.567040050213649 2 31.59506795741496 25.880247688482243 29.037008425270983 13.487675928831807 3 29.04907901407431 26.397170653984503 31.640936194867585 12.912814137073605 4 25.928228278975446 27.80007483765058 31.259203823962533 15.012493059411439 5 24.522004683388456 31.280930883808512 29.659850807522393 14.53721362528064 6 20.22849624604688 41.87951138256524 27.712261304106416 10.179731067281462 7 87.20547763319895 3.8822031238683823 7.542609178475726 1.3697100644569442 8 85.99479757622576 6.254677353161288 6.303563237814741 1.446961832798204 9 84.25391690606668 4.575960215339305 7.989522728918717 3.1806001496753016 10 51.610820075803296 24.535282331072107 13.304202979021317 10.549694614103275 11 44.78490210752481 21.342309827873404 21.628986311952296 12.243801752649494 12 39.50794244743258 21.917473384351688 23.596492286893756 14.97809188132197 13 22.15164280713613 37.46921999855153 24.837047051155157 15.542090143157184 14 16.521920189266833 39.845918933925596 28.038167201796107 15.593993675011466 15 15.348055428143784 23.853897593124593 45.63648214759916 15.161564831132463 16 17.81166260290177 20.15486565434662 43.54404557854332 18.48942616420829 17 18.733553822755475 20.089080945368515 28.268111918499383 32.909253313376624 18 22.298602225816573 22.7111145981701 34.788040460613665 20.202242715399656 19 28.813400767689444 24.15566231320764 26.1765806436038 20.85435627549912 20 31.875709147092195 23.642058759626295 25.541365907828983 18.940866185452528 21 23.450739927093643 28.313980155952006 28.911172536996354 19.324107379957994 22 23.32369697993868 23.036115201699538 28.231598387369335 25.408589430992446 23 20.772879801076698 29.466721386669242 26.698633609347468 23.0617652029066 24 20.129517417859645 24.493337034980566 37.46590058663062 17.911244960529174 25 18.839171474784543 24.222654081066075 35.826412862419424 21.111761581729958 26 18.17227144340101 33.017586847886434 27.858918958066774 20.951222750645776 27 18.764032059483863 32.64792506578471 29.86595611133911 18.72208676339232 28 16.53640489583082 27.810033073413322 38.10986649928784 17.543695531468025 29 17.369275523260026 25.245938246867684 37.114646452453954 20.270139777418343 30 20.17749800835285 29.33485020399295 31.1369891123289 19.350662675325303 31 29.351145498877436 25.782475919175337 25.212442362938464 19.653936219008763 32 30.238635540641674 25.887490041764238 26.97173068102262 16.90214373657147 33 28.355623687323465 26.314185355961662 26.30211476715834 19.028076189556526 34 20.197112715158244 27.734893658112643 28.45762016271154 23.610373464017577 35 20.52754508364918 25.726649445959975 30.97041498684306 22.77539048354779 36 29.749474929387056 25.15148588948169 26.645824783332934 18.453214397798327 37 21.884581029862638 31.5018226589093 27.465115998358403 19.148480312869662 38 20.845303333896627 32.672368008111434 23.990295246602127 22.49203341138981 39 21.071626873958913 30.640887912512373 26.956944209738552 21.330541003790167 40 24.227784081307487 25.4200564903556 26.148818289356157 24.20334113898076 41 18.703980880187334 24.671378219829563 27.64044130072665 28.98419959925645 42 22.53578929580185 25.094754122106078 25.623445911691572 26.7460106704005 43 22.064734567752215 25.615298264249333 26.229087704898248 26.090879463100208 44 20.6464403833619 28.928976655481254 28.60789899331289 21.816683967843954 45 19.439079738309633 34.848695169350364 23.749788764695943 21.962436327644063 46 22.358653405113103 31.57515148588948 26.046520049248002 20.019675059749414 47 21.973299857567053 28.08041426260773 26.800931849455615 23.145354030369603 48 22.15164280713613 25.396820606909206 30.47099437510562 21.980542210849045 49 21.5755739564976 24.540412331313522 31.8008714965116 22.08314221567728 50 20.535089201651257 31.74836443521715 26.80696714385728 20.909579219274317 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 116.0 1 284.0 2 452.0 3 1602.0 4 2752.0 5 2109.5 6 1467.0 7 1480.5 8 1494.0 9 1551.0 10 1608.0 11 1600.5 12 1593.0 13 1611.0 14 1629.0 15 1551.5 16 1474.0 17 1377.5 18 1281.0 19 1277.0 20 1273.0 21 1280.0 22 1287.0 23 1466.0 24 1645.0 25 1869.0 26 2093.0 27 2541.0 28 2989.0 29 3613.0 30 4237.0 31 5035.0 32 5833.0 33 6554.5 34 7276.0 35 7931.0 36 8586.0 37 9756.0 38 10926.0 39 13336.5 40 15747.0 41 20838.0 42 25929.0 43 29637.0 44 33345.0 45 33410.0 46 33475.0 47 30563.0 48 27651.0 49 26107.0 50 24563.0 51 23332.5 52 22102.0 53 20418.0 54 18734.0 55 17188.5 56 15643.0 57 14849.5 58 14056.0 59 12872.0 60 11688.0 61 10723.5 62 9759.0 63 8559.0 64 7359.0 65 5761.0 66 4163.0 67 3476.0 68 2789.0 69 2257.5 70 1726.0 71 1373.0 72 1020.0 73 887.0 74 754.0 75 581.5 76 409.0 77 310.0 78 211.0 79 165.5 80 120.0 81 95.0 82 70.0 83 48.5 84 27.0 85 23.5 86 20.0 87 12.5 88 5.0 89 5.0 90 5.0 91 3.0 92 1.0 93 1.5 94 2.0 95 1.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 331384.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 30.675833406188175 #Duplication Level Percentage of deduplicated Percentage of total 1 70.05973962650603 21.49140901263619 2 6.146891084243341 3.771220137324643 3 3.204135611397797 2.9486859067822118 4 2.4232608209767763 2.9734218097610556 5 1.9723489981545748 3.025172464312594 6 1.775410798540458 3.2677323530144764 7 1.6734444204384067 3.5934011579118583 8 1.4845071332699218 3.6430794808388893 9 1.3185622272476727 3.640319569686784 >10 9.857727158616239 49.146920768648194 >50 0.06997676717399971 1.3597150173655361 >100 0.012995685332314232 0.6804708217262347 >500 0.0 0.0 >1k 9.996681024857102E-4 0.4584514999913118 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 1495 0.4511382565241533 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATA 495 0.1493735364411076 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.00965647104265746 0.0 2 0.0 0.0 0.0 0.04737706105303817 0.0 3 0.0 0.0 0.0 0.072725297540014 0.0 4 0.0 0.0 0.0 0.12221471163363348 0.0 5 0.0 0.0 0.0 0.2549911884701736 0.0 6 0.0 0.0 0.0 0.3603070757791565 0.0 7 0.0 0.0 0.0 0.4315235497187553 0.0 8 0.0 0.0 0.0 0.6005117929652608 0.0 9 0.0 0.0 0.0 0.6602612075417039 0.0 10 0.0 0.0 0.0 0.8295512155082925 0.0 11 0.0 0.0 0.0 0.951765927141926 0.0 12 0.0 0.0 0.0 1.0948024044612896 0.0 13 0.0 0.0 0.0 1.1418777007942447 0.0 14 0.0 0.0 0.0 1.1602853487193105 0.0 15 0.0 0.0 0.0 1.195290056248944 0.0 16 0.0 0.0 0.0 1.2791806484320305 0.0 17 0.0 0.0 0.0 1.3573377109335394 0.0 18 0.0 0.0 0.0 1.4771383048065085 0.0 19 0.0 0.0 0.0 1.5426212490645295 0.0 20 0.0 0.0 0.0 1.605991840281969 0.0 21 0.0 0.0 0.0 1.6838471380633948 0.0 22 0.0 0.0 0.0 1.765021847765734 0.0 23 0.0 0.0 0.0 1.871243029234966 0.0 24 0.0 0.0 0.0 1.9448736209352293 0.0 25 0.0 0.0 0.0 2.0010018588706755 0.0 26 0.0 0.0 0.0 2.0655795089684474 0.0 27 0.0 0.0 0.0 2.1244236293846415 0.0 28 0.0 0.0 0.0 2.201675397725901 0.0 29 0.0 0.0 0.0 2.2894889312700673 0.0 30 0.0 0.0 0.0 2.3884677594573063 0.0 31 0.0 0.0 0.0 2.4829201168432995 0.0 32 0.0 0.0 0.0 2.572242473987881 0.0 33 0.0 0.0 0.0 2.6612630664123795 0.0 34 0.0 0.0 0.0 2.757526012118871 0.0 35 0.0 0.0 0.0 2.8830601356734182 0.0 36 0.0 0.0 0.0 2.98234072858074 0.0 37 0.0 0.0 0.0 3.0707577915650726 0.0 38 0.0 0.0 0.0 3.1842213263162975 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position AAATCGA 20 7.848363E-4 44.0 16 CGCATGG 30 2.5222453E-6 44.0 2 CGACAGG 45 4.783942E-10 44.0 2 ACGGGTC 30 2.5222453E-6 44.0 5 CGTTAGG 20 7.848363E-4 44.0 2 TGTTACG 20 7.848363E-4 44.0 1 AACGAGC 30 2.5222453E-6 44.0 15 GCGATAA 20 7.848363E-4 44.0 9 CGTAAGG 25 4.4359622E-5 44.0 2 TGTAGCG 25 4.4359622E-5 44.0 1 CGATCAC 20 7.848363E-4 44.0 34 AATACGG 20 7.848363E-4 44.0 2 AATCGAT 20 7.848363E-4 44.0 17 CGTTTTT 1140 0.0 42.456142 1 GATGAAT 225 0.0 42.044445 20 ATAGCGG 70 0.0 40.857143 2 ATCCGGG 70 0.0 40.857143 3 TAACGGG 65 0.0 40.615387 3 CGACCCG 60 3.6379788E-12 40.333332 32 CGATGAA 240 0.0 40.333332 19 >>END_MODULE