##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546547_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 2000906 Sequences flagged as poor quality 0 Sequence length 50 %GC 47 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 30.68212549714979 31.0 30.0 31.0 28.0 33.0 2 30.999897546411475 31.0 31.0 33.0 28.0 34.0 3 31.161234960562865 31.0 31.0 34.0 28.0 34.0 4 34.994569460034604 35.0 35.0 37.0 32.0 37.0 5 34.79621231582093 35.0 35.0 37.0 32.0 37.0 6 34.83476635084307 35.0 35.0 37.0 32.0 37.0 7 35.43262402131834 35.0 35.0 37.0 35.0 37.0 8 34.39112182181472 36.0 35.0 37.0 33.0 37.0 9 36.52815924386253 39.0 37.0 39.0 32.0 39.0 10 36.00697883858612 38.0 35.0 39.0 30.0 39.0 11 35.681519271769886 37.0 35.0 39.0 30.0 39.0 12 35.02104696572453 37.0 34.0 39.0 30.0 39.0 13 34.646180280333006 37.0 33.0 39.0 27.0 39.0 14 35.5094552167868 38.0 33.0 40.0 27.0 41.0 15 35.85156074298343 38.0 33.0 40.0 29.0 41.0 16 36.028289184999196 38.0 34.0 40.0 30.0 41.0 17 35.957502751253685 38.0 34.0 40.0 30.0 41.0 18 35.893411284688035 37.0 34.0 40.0 30.0 41.0 19 35.88413648617176 37.0 34.0 40.0 29.0 41.0 20 35.73654184654352 37.0 34.0 40.0 29.0 41.0 21 35.5296580648966 37.0 34.0 40.0 29.0 41.0 22 35.48319561238759 37.0 34.0 40.0 29.0 41.0 23 35.44134557045658 37.0 34.0 40.0 29.0 41.0 24 35.374428383942075 37.0 34.0 40.0 29.0 41.0 25 35.19641952195656 36.0 34.0 40.0 27.0 41.0 26 35.00296815542559 36.0 33.0 40.0 27.0 41.0 27 34.80162286484223 36.0 33.0 40.0 27.0 41.0 28 34.83443600049178 36.0 33.0 40.0 27.0 41.0 29 34.71089746344906 36.0 33.0 40.0 26.0 41.0 30 34.72825709953391 36.0 33.0 40.0 26.0 41.0 31 34.65057928758272 36.0 33.0 40.0 26.0 41.0 32 34.45298929584898 36.0 33.0 40.0 25.0 41.0 33 34.32156333181069 36.0 33.0 40.0 24.0 41.0 34 34.20968101450043 36.0 33.0 40.0 24.0 41.0 35 34.04458580263141 36.0 33.0 40.0 24.0 41.0 36 33.97212762618534 36.0 33.0 40.0 23.0 41.0 37 34.00594930496485 36.0 33.0 40.0 23.0 41.0 38 34.045899207658934 36.0 33.0 40.0 23.0 41.0 39 33.9787816119298 36.0 33.0 40.0 23.0 41.0 40 33.85460586354382 36.0 32.0 40.0 23.0 41.0 41 33.90091688465125 35.0 33.0 40.0 23.0 41.0 42 33.75088884735215 35.0 32.0 40.0 23.0 41.0 43 33.78868172717759 35.0 32.0 40.0 23.0 41.0 44 33.494782363589295 35.0 32.0 39.0 23.0 41.0 45 33.400803436043475 35.0 32.0 39.0 23.0 41.0 46 33.36113490588763 35.0 32.0 39.0 23.0 41.0 47 33.30307070896884 35.0 32.0 39.0 23.0 41.0 48 33.34863256944604 35.0 32.0 39.0 23.0 41.0 49 33.35485325147708 35.0 32.0 39.0 23.0 41.0 50 32.78448962619933 35.0 31.0 38.0 22.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 1.0 9 2.0 10 3.0 11 2.0 12 4.0 13 17.0 14 23.0 15 93.0 16 246.0 17 659.0 18 1410.0 19 2694.0 20 4683.0 21 7405.0 22 11432.0 23 16089.0 24 22566.0 25 30483.0 26 39563.0 27 47672.0 28 55530.0 29 64784.0 30 77856.0 31 93668.0 32 114429.0 33 142431.0 34 203742.0 35 219886.0 36 171102.0 37 203022.0 38 238079.0 39 231330.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 35.65954622555982 23.258164051684588 28.425673170053965 12.656616552701628 2 32.570345633428055 24.881928486395662 28.838885984648954 13.708839895527325 3 30.797548710434175 25.531684147081375 29.97342203981596 13.69734510266849 4 27.75567667846466 27.42842492350965 29.232807538185202 15.583090859840492 5 23.803267119994644 31.674051654600465 28.847082271730905 15.675598953673987 6 21.29480345403532 41.0100224598257 27.208224674222574 10.486949411916402 7 88.02227590901322 3.975099280026148 6.35432149236396 1.6483033185966758 8 86.12723436283363 6.093189785027383 6.139868639506304 1.6397072126326775 9 84.46978518731015 4.811220517105752 7.842597303421551 2.87639699216255 10 49.03153871296303 25.634587531848073 13.40457772628999 11.929296028898909 11 40.27120714316415 23.265810587803728 21.161363902152324 15.301618366879804 12 36.10699353193004 22.63754519202801 25.26540477163845 15.990056504403505 13 23.6741755984539 32.2051610620389 26.174742841492805 17.945920498014402 14 18.194957684169072 34.89784127790111 29.12980419869799 17.77739683923183 15 17.769850257833202 23.803666938876688 40.933007347671506 17.493475455618604 16 21.054062509683114 21.147670105442234 38.57507549080267 19.223191894071988 17 21.335085206401498 20.41640137017931 28.15834427004567 30.09016915337352 18 24.026665920338086 23.236673786774592 32.10490647736575 20.63175381552157 19 29.17563343805256 25.38425093432675 25.495350606175403 19.944765021445285 20 31.126499695637875 24.497702540749042 24.507947899601483 19.867849864011603 21 25.724846644470055 26.942495049742465 27.568411509586156 19.76424679620132 22 24.41149159430778 23.22417944671064 27.1240627995518 25.24026615942978 23 22.65623672476368 28.61333815781451 26.6121446984516 22.11828041897021 24 22.39445531174378 24.270605415746665 33.516117198908894 19.818822073600657 25 21.975145259197586 24.942201182864164 31.62567356987285 21.456979988065406 26 20.312248551406213 30.469997091317637 26.803907829753122 22.41384652752303 27 20.95715640814711 29.509182340399796 28.780912246752223 20.75274900470087 28 18.754604164313566 27.637880040341727 33.991451872301845 19.616063923042862 29 20.939964196219112 26.07248916240943 32.32260785864003 20.664938782731422 30 22.764237800276472 27.172340929558906 30.22335881845524 19.840062451709375 31 29.84912834485978 24.688466124845444 25.15785349236796 20.30455203792682 32 29.546265541709605 25.845891811009615 25.6106983536458 18.99714429363498 33 28.21226984176168 25.61344710845987 25.429430467998 20.744852581780453 34 21.87574028964879 26.344016160679214 28.48114803993791 23.29909550973409 35 22.014327509638136 25.749285573635145 30.059832895698246 22.176554021028476 36 29.15099459944645 26.460263500634213 24.94225116022442 19.44649073969492 37 23.045160542274353 30.967421757943654 25.458417336946365 20.529000362835635 38 22.50735416856164 31.893002469881143 23.71655639995082 21.883086961606395 39 23.069999290321487 29.20462030700093 24.988730105262317 22.73665029741527 40 25.423383207407046 24.71390460121565 25.883274876480954 23.97943731489635 41 20.112239155662483 24.895322418944218 27.05294501590779 27.939493409485504 42 22.4876131112606 26.469909131163583 24.406193994120663 26.636283763455154 43 22.12302826819451 26.023961145601042 25.3674585412808 26.48555204492365 44 21.64584443247209 27.068737861748627 28.59759528933393 22.68782241644535 45 21.68107847145243 31.08012070532049 24.521091945348758 22.71770887787832 46 22.96034896192025 29.53357129220463 26.33846867369082 21.1676110721843 47 22.09464112756921 27.150850664648914 26.669418753304754 24.08508945447712 48 22.547835830368843 25.42023463371093 29.593544124511595 22.438385411408632 49 22.192146957428285 25.30018901437649 30.06932859414685 22.438335434048376 50 20.709318678638578 30.19032378332615 27.084630662309973 22.015726875725296 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 534.0 1 1577.5 2 2621.0 3 8817.0 4 15013.0 5 11081.5 6 7150.0 7 7231.5 8 7313.0 9 7584.0 10 7855.0 11 7745.5 12 7636.0 13 7388.5 14 7141.0 15 6953.0 16 6765.0 17 6835.5 18 6906.0 19 6672.5 20 6439.0 21 7074.5 22 7710.0 23 8886.0 24 10062.0 25 11986.5 26 13911.0 27 15794.0 28 17677.0 29 21076.5 30 24476.0 31 28635.0 32 32794.0 33 39586.0 34 46378.0 35 49777.0 36 53176.0 37 61196.0 38 69216.0 39 79907.0 40 90598.0 41 111359.0 42 132120.0 43 147478.0 44 162836.0 45 159593.0 46 156350.0 47 151269.0 48 146188.0 49 148547.0 50 150906.0 51 141153.5 52 131401.0 53 123248.5 54 115096.0 55 109361.0 56 103626.0 57 101955.5 58 100285.0 59 98964.0 60 97643.0 61 91173.5 62 84704.0 63 73719.0 64 62734.0 65 52286.0 66 41838.0 67 34736.5 68 27635.0 69 23174.0 70 18713.0 71 15465.0 72 12217.0 73 9865.0 74 7513.0 75 5769.0 76 4025.0 77 3081.0 78 2137.0 79 1557.0 80 977.0 81 646.5 82 316.0 83 229.0 84 142.0 85 105.5 86 69.0 87 60.0 88 51.0 89 29.0 90 7.0 91 6.0 92 5.0 93 3.0 94 1.0 95 0.5 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 2000906.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 22.534401683609477 #Duplication Level Percentage of deduplicated Percentage of total 1 77.72040004298685 17.513827135794852 2 6.691279542353952 3.0156796196944513 3 2.732916206073462 1.8475389466591638 4 1.4659629324098615 1.321383902888235 5 0.9233059646783344 1.0403073742467068 6 0.6995011789759037 0.9457704327120852 7 0.518872740770451 0.8184740734237701 8 0.43682259234781295 0.7874828608352971 9 0.3880761667872358 0.7870557803597099 >10 6.466330538030736 36.78234442079369 >50 1.7136426653029768 26.242713373548014 >100 0.23826506345949197 7.517121731789176 >500 0.00286270265224705 0.4849113817002596 >1k 0.0015414552742868733 0.4998477638013421 >5k 2.2020789632669615E-4 0.395541201753251 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 7971 0.3983695385990147 No Hit AGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAAT 2060 0.1029533621269565 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.007946400280672856 0.0 2 0.0 0.0 0.0 0.036933269229039244 0.0 3 0.0 0.0 0.0 0.0582236246980118 0.0 4 0.0 0.0 0.0 0.08671072004382015 0.0 5 0.0 0.0 0.0 0.15363040542634188 0.0 6 0.0 0.0 0.0 0.2484374578316023 0.0 7 0.0 0.0 0.0 0.31605682625770526 0.0 8 0.0 0.0 0.0 0.4780834282070222 0.0 9 0.0 0.0 0.0 0.5655937860149353 0.0 10 0.0 0.0 0.0 0.6930360546672357 0.0 11 0.0 0.0 0.0 0.7890925410788913 0.0 12 0.0 0.0 0.0 0.8918959711250803 0.0 13 0.0 0.0 0.0 0.9304285158823054 0.0 14 0.0 0.0 0.0 0.9515689392705104 0.0 15 0.0 0.0 0.0 0.9748583891497152 0.0 16 0.0 0.0 0.0 1.0186885340940555 0.0 17 0.0 0.0 0.0 1.0661170489768135 0.0 18 0.0 0.0 0.0 1.1513784255732153 0.0 19 0.0 0.0 0.0 1.1919600421009282 0.0 20 0.0 0.0 0.0 1.237739304095245 0.0 21 0.0 0.0 0.0 1.2928643324573967 0.0 22 0.0 0.0 0.0 1.3489889080246649 0.0 23 0.0 0.0 0.0 1.4125101329097918 0.0 24 0.0 0.0 0.0 1.4642367007745491 0.0 25 0.0 0.0 0.0 1.5069673437932616 0.0 26 0.0 0.0 0.0 1.5500478283337649 0.0 27 0.0 0.0 0.0 1.5963768412908952 0.0 28 0.0 0.0 0.0 1.6484532506774432 0.0 29 0.0 0.0 0.0 1.7059771923318736 0.0 30 0.0 0.0 0.0 1.7844416479334861 0.0 31 0.0 0.0 0.0 1.850061921949357 0.0 32 0.0 0.0 0.0 1.9121837807473214 0.0 33 0.0 0.0 0.0 1.9798031491734245 0.0 34 0.0 0.0 0.0 2.046522925114923 0.0 35 0.0 0.0 0.0 2.1359324226125564 0.0 36 0.0 0.0 0.0 2.2094990969091 0.0 37 0.0 0.0 0.0 2.2864642317030386 0.0 38 0.0 0.0 0.0 2.378722438735253 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGTTTTT 6015 0.0 41.366585 1 TCGTTGA 60 3.6379788E-12 40.333336 24 TCACGAC 215 0.0 38.88372 25 TAGTACG 85 0.0 38.82353 1 TAGGGAC 1280 0.0 38.67188 5 ACGTTAG 75 0.0 38.13333 1 CGGTCTA 215 0.0 37.860466 31 GGGCGAT 1965 0.0 37.61832 7 CGTTGAT 65 1.0913936E-11 37.23077 25 AATAGGG 1460 0.0 37.219177 3 GTAGGGA 1905 0.0 36.839893 4 AATGCGG 215 0.0 36.837208 2 TACGGGA 520 0.0 36.807693 4 AGGGCGA 1125 0.0 36.764442 6 CCGGTTA 30 1.3014398E-4 36.666668 11 TAGGGAT 1580 0.0 36.341774 5 CGTTTGG 255 0.0 36.235294 2 CTACGAA 110 0.0 36.0 11 GTTAGCG 135 0.0 35.851856 1 GTTGATC 405 0.0 35.851852 16 >>END_MODULE