##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546546_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1770630 Sequences flagged as poor quality 0 Sequence length 50 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 30.689024245607495 31.0 30.0 31.0 28.0 33.0 2 30.99733880031401 31.0 31.0 33.0 28.0 34.0 3 31.17191112767772 31.0 31.0 34.0 28.0 34.0 4 34.98316983220661 35.0 35.0 37.0 32.0 37.0 5 34.76657630334965 35.0 35.0 37.0 32.0 37.0 6 34.80912782455962 35.0 35.0 37.0 32.0 37.0 7 35.429578172740776 35.0 35.0 37.0 35.0 37.0 8 34.412519272801205 36.0 35.0 37.0 33.0 37.0 9 36.58457837041053 39.0 37.0 39.0 32.0 39.0 10 36.06861173706534 38.0 35.0 39.0 31.0 39.0 11 35.6709154368784 37.0 35.0 39.0 30.0 39.0 12 34.566882409086034 35.0 33.0 39.0 27.0 39.0 13 33.83030729175491 35.0 33.0 39.0 23.0 39.0 14 34.685052213054114 36.0 33.0 40.0 24.0 41.0 15 35.2763897595771 36.0 33.0 40.0 27.0 41.0 16 35.59142056782049 36.0 34.0 40.0 30.0 41.0 17 35.562015779694235 36.0 34.0 40.0 29.0 41.0 18 35.518775238192056 36.0 34.0 40.0 29.0 41.0 19 35.48278352902639 36.0 34.0 40.0 29.0 41.0 20 35.30169261788177 36.0 34.0 40.0 29.0 41.0 21 35.05153871785748 36.0 33.0 40.0 28.0 41.0 22 34.990040832923874 35.0 33.0 40.0 27.0 41.0 23 35.0185939467873 35.0 33.0 40.0 29.0 41.0 24 34.967859462451216 35.0 33.0 40.0 29.0 41.0 25 34.79944144174672 35.0 33.0 39.0 27.0 41.0 26 34.56789052484144 35.0 33.0 39.0 27.0 41.0 27 34.3874304626037 35.0 33.0 39.0 26.0 41.0 28 34.480849754042346 35.0 33.0 39.0 26.0 41.0 29 34.436095626980226 35.0 33.0 39.0 26.0 41.0 30 34.48612301836069 36.0 33.0 39.0 27.0 41.0 31 34.372731174779595 35.0 33.0 39.0 26.0 41.0 32 34.13921203187566 35.0 33.0 39.0 25.0 41.0 33 33.99805718868426 35.0 33.0 39.0 24.0 41.0 34 33.968127163777865 35.0 33.0 39.0 24.0 41.0 35 33.786200391950885 35.0 32.0 39.0 24.0 41.0 36 33.6498585249318 35.0 32.0 39.0 23.0 41.0 37 33.64063243026494 35.0 32.0 39.0 23.0 41.0 38 33.72439357742724 35.0 32.0 39.0 23.0 41.0 39 33.67716744887413 35.0 32.0 39.0 23.0 41.0 40 33.54213867380537 35.0 32.0 39.0 23.0 41.0 41 33.65798444621406 35.0 32.0 39.0 23.0 41.0 42 33.5125768794158 35.0 32.0 39.0 23.0 41.0 43 33.53727147964284 35.0 32.0 39.0 23.0 41.0 44 33.26352710617125 35.0 32.0 39.0 23.0 41.0 45 33.15545370856701 35.0 31.0 39.0 23.0 40.0 46 33.15041708318508 35.0 31.0 38.0 23.0 40.0 47 33.11349858524932 35.0 31.0 38.0 23.0 40.0 48 33.19837684891818 35.0 32.0 38.0 23.0 40.0 49 33.249745006014805 35.0 32.0 38.0 24.0 40.0 50 32.642888124565836 35.0 31.0 38.0 23.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 1.0 10 0.0 11 2.0 12 2.0 13 8.0 14 18.0 15 87.0 16 205.0 17 578.0 18 1214.0 19 2388.0 20 4288.0 21 6937.0 22 10474.0 23 14781.0 24 20629.0 25 27867.0 26 35849.0 27 43901.0 28 51303.0 29 60803.0 30 72898.0 31 89207.0 32 109113.0 33 137532.0 34 207691.0 35 225657.0 36 133740.0 37 155525.0 38 180887.0 39 177045.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 34.047542400162655 24.078152973800286 29.778892258687584 12.095412367349475 2 30.012424956089074 25.3985304665571 31.51827315701191 13.070771420341911 3 29.79888514257637 25.868306760870425 30.71211941512343 13.620688681429774 4 27.36794248374872 27.900069466799955 29.888796643002774 14.843191406448552 5 23.02338715598403 32.94341562042889 29.17899278787776 14.854204435709322 6 20.59402585520408 41.980538000598656 26.517171854085834 10.908264290111429 7 90.18716502035998 3.933571666581951 4.581363695407849 1.2978996176502149 8 89.16086364740234 5.361537983655535 4.143496947414197 1.3341014215279308 9 88.83894433054903 3.9297312256089643 5.127440515522723 2.1038839283192985 10 58.04335180133625 23.181579437827214 9.718292359216777 9.056776401619762 11 50.10606394334221 18.921005517810045 17.91300271654722 13.059927822300537 12 43.72743034964956 21.023590473447303 21.650034168629244 13.59894500827389 13 21.877580296278726 40.024962866324415 22.17035744339585 15.927099394001004 14 15.229099247160615 42.57879963628765 26.720037500776563 15.472063615775175 15 13.877715841254243 22.39988026860496 48.04323884718998 15.679165042950812 16 17.425436144197263 17.3448998379108 45.52475672500748 19.704907292884457 17 18.367021907456667 17.524892269983 26.532872480416575 37.575213342143755 18 23.329492892360346 22.4090860315255 32.88366287705506 21.37775819905909 19 31.726617079796455 23.28018840751597 23.735676002326855 21.25751851036072 20 33.13131484273959 23.390375177196816 22.57123170848794 20.907078271575656 21 24.05369840113406 27.72549883374844 26.22061074306885 22.000192022048648 22 23.469443079581843 22.890327171684653 24.68115868363238 28.95907106510112 23 21.21860580697266 30.07748654433733 24.4778412203566 24.226066428333418 24 20.963216482269022 23.32282859773075 36.946284655744 18.767670264256225 25 19.126130247426058 23.99287259337072 34.943946504916326 21.937050654286892 26 18.027933560371167 34.29508141170092 25.715592755121058 21.961392272806854 27 18.874694317841673 32.32007816426922 28.559100433179154 20.24612708470996 28 16.082185436821923 27.627906451376067 38.65059329165325 17.639314820148762 29 17.192411740453963 24.577636208581126 36.99214403912732 21.237808011837593 30 20.315593884662523 28.984259839718067 30.56889355766027 20.131252717959143 31 32.809621434178794 24.69375307094085 22.68102313865686 19.81560235622349 32 32.90986823898838 25.058538486301487 23.84942082761503 18.182172447095102 33 29.671868205102136 25.641099495659738 24.060870989421844 20.62616130981628 34 20.7024053585447 26.338647825915068 27.060876637129155 25.898070178411075 35 21.110847551436496 24.89961200250758 31.126096361182178 22.863444084873745 36 33.32949289236035 23.53331864929432 24.301463320964857 18.83572513738048 37 22.485725419765846 32.15646408340534 25.914109667180607 19.443700829648204 38 21.22120375233674 34.52409594325184 22.03656325714576 22.218137047265664 39 23.04360594816534 30.217945025217013 24.841553571327722 21.896895455289926 40 26.03124311685671 24.613160287581255 23.970168809971593 25.38542778559044 41 18.73960115890954 23.354342804538497 25.779072985321612 32.126983051230354 42 22.889084676075747 25.053342595573326 22.48758916317921 29.56998356517172 43 22.641206802098687 24.775418918689958 24.482246432060904 28.101127847150448 44 20.909958602305394 28.744853526710834 27.939942280431257 22.405245590552514 45 19.05124164845281 35.960420867148976 22.0378622298278 22.950475254570406 46 22.889875355099598 31.258986914262156 25.349451890005252 20.501685840632994 47 22.296301316480573 25.690234549284718 26.48266436240208 25.530799771832623 48 23.52541185905582 22.638100563076417 30.913121318400794 22.92336625946697 49 21.115986965091523 23.37377091769596 31.887407307003723 23.622834810208797 50 19.746417941636594 32.255863732117945 25.69187238440555 22.305845941839912 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 326.0 1 1033.0 2 1740.0 3 4497.0 4 7254.0 5 5688.5 6 4123.0 7 4395.5 8 4668.0 9 4948.5 10 5229.0 11 5340.5 12 5452.0 13 5335.0 14 5218.0 15 4843.5 16 4469.0 17 4559.0 18 4649.0 19 4081.0 20 3513.0 21 3901.0 22 4289.0 23 4973.5 24 5658.0 25 6681.5 26 7705.0 27 9122.5 28 10540.0 29 13194.0 30 15848.0 31 20333.5 32 24819.0 33 28000.5 34 31182.0 35 35852.0 36 40522.0 37 43174.0 38 45826.0 39 61847.5 40 77869.0 41 109190.0 42 140511.0 43 166235.5 44 191960.0 45 183457.5 46 174955.0 47 163491.0 48 152027.0 49 142689.0 50 133351.0 51 128645.5 52 123940.0 53 114122.5 54 104305.0 55 93502.0 56 82699.0 57 81045.5 58 79392.0 59 78329.0 60 77266.0 61 71356.5 62 65447.0 63 58747.5 64 52048.0 65 41673.5 66 31299.0 67 25477.5 68 19656.0 69 16371.5 70 13087.0 71 10742.5 72 8398.0 73 6373.5 74 4349.0 75 3420.5 76 2492.0 77 2090.5 78 1689.0 79 1075.5 80 462.0 81 345.5 82 229.0 83 156.0 84 83.0 85 70.5 86 58.0 87 36.0 88 14.0 89 10.5 90 7.0 91 6.0 92 5.0 93 3.0 94 1.0 95 1.0 96 1.0 97 0.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 1770630.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 18.937268715935467 #Duplication Level Percentage of deduplicated Percentage of total 1 80.23811537956352 15.19490752203029 2 6.971191917636654 2.6403066922928558 3 2.560762160331213 1.4548152344337482 4 1.3427224957412358 1.0170998685113322 5 0.8255241984459449 0.7816586788739048 6 0.5666699097972531 0.6438708213039298 7 0.41513249238429506 0.5503032892698201 8 0.29831066168924025 0.45193513289901266 9 0.2282053139617495 0.3889426817608263 >10 3.379539745337575 16.50245980014767 >50 2.013234958555634 27.968847082280295 >100 1.153173903272558 31.130981321734826 >500 0.005340141563875939 0.6701395306773132 >1k 0.0020767217192850873 0.6037323437842395 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 3640 0.2055765462010697 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.010109396090656997 0.0 2 0.0 0.0 0.0 0.042583713141650145 0.0 3 0.0 0.0 0.0 0.059244449715637935 0.0 4 0.0 0.0 0.0 0.09482500578889999 0.0 5 0.0 0.0 0.0 0.17157734817550815 0.0 6 0.0 0.0 0.0 0.2636914544540644 0.0 7 0.0 0.0 0.0 0.32937429050676875 0.0 8 0.0 0.0 0.0 0.5277782484200538 0.0 9 0.0 0.0 0.0 0.6183674737240418 0.0 10 0.0 0.0 0.0 0.7649819555751343 0.0 11 0.0 0.0 0.0 0.8601458238028272 0.0 12 0.0 0.0 0.0 0.9736082637253407 0.0 13 0.0 0.0 0.0 1.0169261788177089 0.0 14 0.0 0.0 0.0 1.0321185114902605 0.0 15 0.0 0.0 0.0 1.052902074402896 0.0 16 0.0 0.0 0.0 1.1154221943601994 0.0 17 0.0 0.0 0.0 1.178732993341353 0.0 18 0.0 0.0 0.0 1.3022483522813915 0.0 19 0.0 0.0 0.0 1.3438719551797949 0.0 20 0.0 0.0 0.0 1.392442238073454 0.0 21 0.0 0.0 0.0 1.452759752178603 0.0 22 0.0 0.0 0.0 1.510196935554012 0.0 23 0.0 0.0 0.0 1.5761621569723772 0.0 24 5.6477073132161996E-5 0.0 0.0 1.625297210597358 0.0 25 5.6477073132161996E-5 0.0 0.0 1.677990319829665 0.0 26 5.6477073132161996E-5 0.0 0.0 1.7256569695532098 0.0 27 5.6477073132161996E-5 0.0 0.0 1.7692007929381068 0.0 28 5.6477073132161996E-5 0.0 0.0 1.8198607275376562 0.0 29 5.6477073132161996E-5 0.0 0.0 1.8698994143327516 0.0 30 5.6477073132161996E-5 0.0 0.0 1.950209812326686 0.0 31 5.6477073132161996E-5 0.0 0.0 2.0187729791091304 0.0 32 5.6477073132161996E-5 0.0 0.0 2.0794293556530725 0.0 33 5.6477073132161996E-5 0.0 0.0 2.1455640082908345 0.0 34 5.6477073132161996E-5 0.0 0.0 2.212432862879314 0.0 35 5.6477073132161996E-5 0.0 0.0 2.305563556474249 0.0 36 5.6477073132161996E-5 0.0 0.0 2.3820335134951964 0.0 37 5.6477073132161996E-5 0.0 0.0 2.459576534905655 0.0 38 5.6477073132161996E-5 0.0 0.0 2.536950125096717 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GCGACTA 30 2.5284953E-6 44.000004 30 TAACGCG 30 2.5284953E-6 44.000004 1 ACTATCG 20 7.857636E-4 44.0 25 TCCGCAT 20 7.857636E-4 44.0 44 CCCGTTA 20 7.857636E-4 44.0 19 CTACCGT 20 7.857636E-4 44.0 11 CGTCGCA 20 7.857636E-4 44.0 44 TAAGCGA 20 7.857636E-4 44.0 41 TAATGCG 45 4.802132E-10 44.0 1 ATAACGG 115 0.0 42.086952 2 CGGTCTA 100 0.0 41.8 31 CGTTTTT 3630 0.0 41.333332 1 GCGAATG 135 0.0 40.74074 1 CTATGCG 60 3.6379788E-12 40.333336 1 GTATACG 115 0.0 40.17391 1 TAGGGAC 1275 0.0 40.031372 5 AATACGG 95 0.0 39.36842 2 TAGTCGG 170 0.0 38.823532 2 ACGCACG 40 4.1262138E-7 38.5 1 TACGAAC 75 0.0 38.13333 8 >>END_MODULE