##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546545_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1416802 Sequences flagged as poor quality 0 Sequence length 50 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 30.601832154387132 31.0 30.0 31.0 28.0 34.0 2 30.942920746865124 31.0 31.0 33.0 28.0 34.0 3 31.056383319616998 31.0 31.0 34.0 28.0 34.0 4 34.898523576336004 35.0 35.0 37.0 32.0 37.0 5 34.706651317544726 35.0 35.0 37.0 32.0 37.0 6 34.74699711039369 35.0 35.0 37.0 32.0 37.0 7 35.40454064858745 35.0 35.0 37.0 33.0 37.0 8 34.36634123893106 35.0 35.0 37.0 32.0 37.0 9 36.4948489626638 39.0 37.0 39.0 32.0 39.0 10 35.91954768556227 38.0 35.0 39.0 30.0 39.0 11 35.61707634517738 37.0 35.0 39.0 30.0 39.0 12 35.26834095378182 37.0 34.0 39.0 30.0 39.0 13 35.07427149312325 37.0 34.0 39.0 28.0 39.0 14 36.026931074349136 38.0 34.0 40.0 29.0 41.0 15 36.23587558459121 38.0 34.0 40.0 30.0 41.0 16 36.32241767021786 38.0 34.0 40.0 30.0 41.0 17 36.21936445600726 38.0 34.0 40.0 30.0 41.0 18 36.071905601488425 38.0 34.0 40.0 30.0 41.0 19 35.98256001897231 37.0 34.0 40.0 30.0 41.0 20 35.7485611962716 37.0 34.0 40.0 29.0 41.0 21 35.57575017539501 37.0 34.0 40.0 29.0 41.0 22 35.52654569939907 37.0 34.0 40.0 29.0 41.0 23 35.44751489622403 37.0 34.0 40.0 29.0 41.0 24 35.351260091388916 37.0 34.0 40.0 28.0 41.0 25 35.18762184130175 37.0 33.0 40.0 27.0 41.0 26 34.99916784420124 36.0 33.0 40.0 27.0 41.0 27 34.786023029329435 36.0 33.0 40.0 26.0 41.0 28 34.78340586758065 36.0 33.0 40.0 26.0 41.0 29 34.60811390723615 36.0 33.0 40.0 25.0 41.0 30 34.567129351878386 36.0 33.0 40.0 25.0 41.0 31 34.43596211750125 36.0 33.0 40.0 24.0 41.0 32 34.06670798036705 36.0 33.0 40.0 23.0 41.0 33 33.76710154277027 36.0 32.0 40.0 22.0 41.0 34 33.54405273284482 36.0 32.0 40.0 21.0 41.0 35 33.281332183325546 36.0 31.0 40.0 18.0 41.0 36 33.21792388774155 36.0 31.0 40.0 18.0 41.0 37 33.230765484520774 36.0 31.0 40.0 18.0 41.0 38 33.247553292556056 36.0 31.0 40.0 18.0 41.0 39 33.1357627953659 36.0 31.0 40.0 18.0 41.0 40 33.044965351545244 36.0 31.0 40.0 18.0 41.0 41 33.070117066463766 36.0 31.0 40.0 18.0 41.0 42 32.91469238468043 36.0 31.0 40.0 18.0 41.0 43 32.958970978301835 36.0 31.0 40.0 18.0 41.0 44 32.57699099803642 35.0 31.0 40.0 15.0 41.0 45 32.55256556667763 35.0 31.0 39.0 16.0 41.0 46 32.507093440014906 35.0 30.0 39.0 17.0 41.0 47 32.471667883021055 35.0 30.0 39.0 17.0 41.0 48 32.49621683199205 35.0 31.0 39.0 17.0 41.0 49 32.52062744123738 35.0 31.0 39.0 18.0 41.0 50 31.99179137240066 35.0 30.0 39.0 15.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 1.0 9 1.0 10 2.0 11 4.0 12 6.0 13 7.0 14 26.0 15 100.0 16 240.0 17 647.0 18 1494.0 19 2967.0 20 4947.0 21 7343.0 22 10704.0 23 14974.0 24 20961.0 25 28424.0 26 36685.0 27 42918.0 28 45579.0 29 48341.0 30 54799.0 31 64045.0 32 75398.0 33 91596.0 34 122388.0 35 134101.0 36 121496.0 37 143760.0 38 171397.0 39 171451.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 31.293928156510226 23.368050016868978 27.27579435940943 18.06222746721137 2 34.89231381660952 24.07506482910103 27.966293102353045 13.066328251936405 3 27.97822137461692 24.727590728979774 34.585990138353836 12.708197758049467 4 25.124611625336495 26.274666467156315 34.57236791026551 14.028353997241675 5 22.39931902975857 30.406224723002932 33.55641790454841 13.638038342690088 6 19.465599286279947 40.06939572360852 30.546823056432725 9.918181933678806 7 84.08316758446134 3.165721109936322 11.486785027124467 1.264326278477868 8 82.65975062147004 5.504650614553057 10.567037595937894 1.268561168039006 9 80.83973625107814 4.4385171675364665 12.15434478494525 2.567401796440152 10 40.883553241737374 29.531790610120538 18.572037588879745 11.012618559262338 11 30.957677925355835 25.33127423592005 29.798235745008828 13.912812093715281 12 30.08507893128327 21.891132282421964 31.543221988675906 16.480566797618863 13 22.637672730557977 27.005678986901486 32.029034402831165 18.32761387970937 14 17.46419047968594 30.111546991040385 33.713744051744705 18.71051847752897 15 17.233812487560012 25.3266158574028 40.423079583456264 17.016492071580927 16 20.88915741225662 22.624262246947705 39.14788375510481 17.338696585690872 17 20.732043009538383 22.66061171568081 32.90304502675745 23.704300248023365 18 21.70451481576113 24.491848543409738 34.4573906586806 19.34624598214853 19 25.300500705109112 25.807275822592008 30.75701474165056 18.13520873064832 20 27.621996581032494 24.5505017638315 30.3808153856361 17.446686269499903 21 24.438559516432075 25.528761252454473 32.11359103106856 17.91908820004489 22 22.203667132033974 23.187079069622996 33.04067893749444 21.56857486084859 23 21.342784665747224 26.316874199782326 32.53418614598229 19.80615498848816 24 21.021074222086078 23.683408126188414 36.35179792236318 18.943719729362325 25 20.86628900862647 25.423453665367497 34.0199971485077 19.690260177498338 26 19.97611522287518 29.066023339888 31.532564183280375 19.425297253956444 27 19.590246202362785 27.97638625580709 33.03291497329902 19.4004525685311 28 18.793663475912652 26.751373868755124 35.791027962975775 18.66393469235645 29 19.98310279065106 25.491917713272567 35.52168898688737 19.003290509189004 30 21.014863050729744 26.09242505304199 33.64499767786889 19.247714218359377 31 24.588051117940264 24.916960873855345 30.63709678557766 19.857891222626733 32 25.48747107923337 26.13378580775578 30.433963249628388 17.94477986338246 33 25.17592437051896 26.398678149804983 29.374464462924248 19.050933016751813 34 21.07153998935631 27.214670786743667 30.786376642607788 20.927412581292234 35 21.236983008211453 26.90347698549268 31.285387795895264 20.574152210400605 36 23.932207887905296 27.9296613076492 28.479420554177647 19.65871025026786 37 22.127015630977372 30.10208907102051 28.33981036164545 19.43108493635667 38 21.826479635121913 30.14316749976355 27.15940547797081 20.870947387143723 39 22.072738463102112 28.63321762673966 28.04223878848279 21.251805121675435 40 23.06913739534529 26.603576223071396 28.92930698855592 21.397979393027395 41 19.66089827654111 26.611834257715618 29.775649667349423 23.951617798393848 42 21.390709499280774 27.829223843557532 27.40015894952153 23.379907707640164 43 21.436305143555696 27.577106751684425 27.76280665894035 23.223781445819526 44 21.01521595819317 28.698858414937302 29.44709281889777 20.838832807971755 45 21.198939583653893 29.406437879110843 27.80423799514682 21.59038454208845 46 21.53483690734485 29.946950950097474 28.11613761132466 20.402074531233016 47 21.29514215818442 27.830494310425873 29.334868245527602 21.539495285862102 48 21.89847275766127 25.52607915573242 31.153541567558484 21.42190651904783 49 21.326903829892956 26.028760546639546 31.04908095838374 21.59525466508376 50 19.680237605536977 28.880746921588198 29.687493382985057 21.751522089889765 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 463.0 1 1166.5 2 1870.0 3 15233.0 4 28596.0 5 21330.5 6 14065.0 7 13845.0 8 13625.0 9 13580.5 10 13536.0 11 13344.5 12 13153.0 13 12596.0 14 12039.0 15 11199.5 16 10360.0 17 9707.0 18 9054.0 19 8781.0 20 8508.0 21 8384.5 22 8261.0 23 8931.0 24 9601.0 25 10614.0 26 11627.0 27 14384.5 28 17142.0 29 19576.0 30 22010.0 31 26277.5 32 30545.0 33 35293.5 34 40042.0 35 43410.0 36 46778.0 37 51525.5 38 56273.0 39 62556.0 40 68839.0 41 79376.0 42 89913.0 43 97311.0 44 104709.0 45 105200.5 46 105692.0 47 101886.5 48 98081.0 49 97107.0 50 96133.0 51 91175.0 52 86217.0 53 81258.5 54 76300.0 55 72299.5 56 68299.0 57 65187.5 58 62076.0 59 60342.0 60 58608.0 61 53890.5 62 49173.0 63 41411.0 64 33649.0 65 27098.0 66 20547.0 67 16231.5 68 11916.0 69 10040.5 70 8165.0 71 6619.0 72 5073.0 73 3918.0 74 2763.0 75 2122.0 76 1481.0 77 1149.5 78 818.0 79 658.0 80 498.0 81 334.0 82 170.0 83 122.5 84 75.0 85 51.0 86 27.0 87 25.0 88 23.0 89 13.5 90 4.0 91 3.5 92 3.0 93 2.0 94 1.0 95 1.0 96 1.0 97 0.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 1416802.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 31.274399916299256 #Duplication Level Percentage of deduplicated Percentage of total 1 75.82340469046906 23.713314813051305 2 6.319735934644011 3.9529189797092807 3 2.759363364860067 2.588923001610568 4 1.7648220292443648 2.207749996947322 5 1.32982344660444 2.0794715143589344 6 1.1046308468505397 2.072800011857046 7 0.9562257996906773 2.093377164886652 8 0.8301481447764862 2.076990805561098 9 0.7794741246494428 2.1939826948824575 >10 8.135327423260973 51.33269304348942 >50 0.1738624173780108 3.295994883012431 >100 0.022056448864162477 1.1539404244322218 >500 9.002629662818672E-4 0.15689476304803787 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 2.250657415704668E-4 1.0809479031533054 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 15357 1.0839199831733721 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.009810827483303948 0.0 2 0.0 0.0 0.0 0.03980796187470091 0.0 3 0.0 0.0 0.0 0.07072265567101119 0.0 4 0.0 0.0 0.0 0.09528501512561388 0.0 5 0.0 0.0 0.0 0.16311382959651383 0.0 6 0.0 0.0 0.0 0.2685625796688599 0.0 7 0.0 0.0 0.0 0.3442965213205515 0.0 8 0.0 0.0 0.0 0.5200444381077949 0.0 9 0.0 0.0 0.0 0.6293751702778511 0.0 10 0.0 0.0 0.0 0.7701852481857028 0.0 11 7.058149268563992E-5 0.0 0.0 0.8500129164131615 0.0 12 7.058149268563992E-5 0.0 0.0 0.940074901080038 0.0 13 7.058149268563992E-5 0.0 0.0 0.979459373998625 0.0 14 7.058149268563992E-5 0.0 0.0 1.0023277776287725 0.0 15 7.058149268563992E-5 0.0 0.0 1.0244197848393777 0.0 16 7.058149268563992E-5 0.0 0.0 1.0647923986555636 0.0 17 7.058149268563992E-5 0.0 0.0 1.1064354793400912 0.0 18 7.058149268563992E-5 0.0 0.0 1.1795579057624141 0.0 19 7.058149268563992E-5 0.0 0.0 1.2175307488272884 0.0 20 7.058149268563992E-5 0.0 0.0 1.258397433092274 0.0 21 7.058149268563992E-5 0.0 0.0 1.3001110952694872 0.0 22 7.058149268563992E-5 0.0 0.0 1.350506281047034 0.0 23 7.058149268563992E-5 0.0 0.0 1.4068303122101748 0.0 24 7.058149268563992E-5 0.0 0.0 1.4512260711094422 0.0 25 7.058149268563992E-5 0.0 0.0 1.491881010896371 0.0 26 7.058149268563992E-5 0.0 0.0 1.530277342917359 0.0 27 7.058149268563992E-5 0.0 0.0 1.5741084498751414 0.0 28 7.058149268563992E-5 0.0 0.0 1.6201275831061785 0.0 29 7.058149268563992E-5 0.0 0.0 1.6749694029229207 7.058149268563992E-5 30 7.058149268563992E-5 0.0 0.0 1.7415277505254791 7.058149268563992E-5 31 7.058149268563992E-5 0.0 0.0 1.7993339930350183 7.058149268563992E-5 32 7.058149268563992E-5 0.0 0.0 1.8604575657007825 7.058149268563992E-5 33 7.058149268563992E-5 0.0 0.0 1.9196754380640344 7.058149268563992E-5 34 7.058149268563992E-5 0.0 0.0 1.985386807754365 7.058149268563992E-5 35 7.058149268563992E-5 0.0 0.0 2.0594267935816015 7.058149268563992E-5 36 7.058149268563992E-5 0.0 0.0 2.133607942394209 7.058149268563992E-5 37 7.058149268563992E-5 0.0 0.0 2.211035839870356 7.058149268563992E-5 38 7.058149268563992E-5 0.0 0.0 2.291781067502728 7.058149268563992E-5 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGTTTTT 11905 0.0 43.13146 1 TAGTACG 130 0.0 40.615383 1 TGCGTTG 45 2.3515895E-8 39.11111 1 AGGGCGA 770 0.0 38.285713 6 CGGTCTA 110 0.0 38.0 31 GTTTTTT 13580 0.0 37.876286 2 TAGGGAT 1880 0.0 37.329784 5 TACGGGA 465 0.0 36.90323 4 TAGGGAC 1100 0.0 36.6 5 GCGCGAC 285 0.0 36.280704 9 GGGCGAT 1380 0.0 36.188404 7 CGTTAGG 225 0.0 36.17778 2 AGGGATT 1825 0.0 36.04384 6 CTACGGG 220 0.0 36.0 3 ATAGGGA 1895 0.0 35.98945 4 ACGGGAT 575 0.0 35.965218 5 AGACGGG 560 0.0 35.75 3 CGGGATT 550 0.0 35.6 6 TAAGGGA 1525 0.0 35.48852 4 CTAGGGA 970 0.0 35.381443 4 >>END_MODULE