##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546544_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 527463 Sequences flagged as poor quality 0 Sequence length 50 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 30.601985352527098 31.0 30.0 31.0 28.0 33.0 2 30.928594043563244 31.0 31.0 33.0 28.0 34.0 3 31.085808862422578 31.0 31.0 34.0 28.0 34.0 4 34.903094624646656 35.0 35.0 37.0 32.0 37.0 5 34.68901136193439 35.0 35.0 37.0 32.0 37.0 6 34.7160976220133 35.0 35.0 37.0 32.0 37.0 7 35.403935441917255 35.0 35.0 37.0 33.0 37.0 8 34.384921785983096 35.0 35.0 37.0 33.0 37.0 9 36.53241838764046 39.0 37.0 39.0 32.0 39.0 10 35.90957849176151 38.0 35.0 39.0 30.0 39.0 11 35.577335282285205 37.0 35.0 39.0 30.0 39.0 12 34.89825447472145 37.0 33.0 39.0 29.0 39.0 13 34.44547958814173 37.0 33.0 39.0 26.0 39.0 14 35.332578778037515 38.0 33.0 40.0 26.0 41.0 15 35.73701283312763 38.0 33.0 40.0 29.0 41.0 16 35.93025671942866 38.0 34.0 40.0 30.0 41.0 17 35.86381604017723 37.0 34.0 40.0 29.0 41.0 18 35.78264257398149 37.0 34.0 40.0 29.0 41.0 19 35.79178065570476 37.0 34.0 40.0 29.0 41.0 20 35.58827633407462 37.0 34.0 40.0 29.0 41.0 21 35.39452056352768 37.0 34.0 40.0 29.0 41.0 22 35.33124787899815 37.0 33.0 40.0 28.0 41.0 23 35.287011600813706 36.0 34.0 40.0 29.0 41.0 24 35.23468186394117 36.0 34.0 40.0 28.0 41.0 25 35.0907570767997 36.0 33.0 40.0 27.0 41.0 26 34.893010505002245 36.0 33.0 40.0 27.0 41.0 27 34.6991542534737 36.0 33.0 40.0 26.0 41.0 28 34.75242623653223 36.0 33.0 40.0 26.0 41.0 29 34.65644794042426 36.0 33.0 40.0 26.0 41.0 30 34.68590213910739 36.0 33.0 40.0 26.0 41.0 31 34.59962689326076 36.0 33.0 40.0 25.0 41.0 32 34.32955297338391 36.0 33.0 40.0 24.0 41.0 33 34.16759469384582 36.0 33.0 40.0 24.0 41.0 34 34.09744569761291 36.0 33.0 40.0 24.0 41.0 35 33.88909553845483 36.0 32.0 40.0 23.0 41.0 36 33.82548159776136 36.0 32.0 40.0 23.0 41.0 37 33.84753432942216 36.0 32.0 40.0 23.0 41.0 38 33.88897609879745 36.0 32.0 40.0 23.0 41.0 39 33.83642264955078 36.0 32.0 40.0 23.0 41.0 40 33.74752731471212 36.0 32.0 40.0 23.0 41.0 41 33.82505502755644 36.0 32.0 40.0 23.0 41.0 42 33.68034155950275 36.0 32.0 40.0 23.0 41.0 43 33.737092459565886 35.0 32.0 40.0 23.0 41.0 44 33.44485205597359 35.0 32.0 40.0 23.0 41.0 45 33.38681575769296 35.0 32.0 39.0 23.0 41.0 46 33.357793816817484 35.0 32.0 39.0 23.0 41.0 47 33.30701110788814 35.0 32.0 39.0 23.0 41.0 48 33.3675328885628 35.0 32.0 39.0 23.0 41.0 49 33.40537061367338 35.0 32.0 39.0 23.0 41.0 50 32.8213182725613 35.0 31.0 39.0 21.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 13 2.0 14 9.0 15 33.0 16 77.0 17 195.0 18 432.0 19 775.0 20 1404.0 21 2300.0 22 3254.0 23 4777.0 24 6330.0 25 8565.0 26 11069.0 27 13372.0 28 15023.0 29 17437.0 30 20864.0 31 24814.0 32 30317.0 33 37085.0 34 52392.0 35 57464.0 36 42934.0 37 51330.0 38 62170.0 39 63039.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 34.06987788716933 23.107213207371892 29.194654411778647 13.628254493680124 2 31.84223348367563 25.089532346344672 30.18922654290443 12.879007627075264 3 29.017390793287873 25.729198066973417 31.923755789505613 13.329655350233097 4 26.195202317508524 27.763463977568094 31.284848415907845 14.756485289015533 5 23.259640960598187 31.863846374058465 30.80197094393351 14.074541721409842 6 20.094679626817427 41.66055249372942 27.653503658076488 10.591264221376665 7 88.26078796048253 3.6144715363921263 6.7265381647622675 1.39820233836307 8 87.08136874055621 5.727984711723855 5.873776928429103 1.3168696192908318 9 85.60638376530676 4.512733594583886 7.357482894534782 2.523399745574571 10 47.280283166781366 28.33032838322309 13.527394338560239 10.861994111435305 11 39.479546432640774 23.578146713608348 24.06348881343336 12.878818040317519 12 36.2891804733223 22.568976402136265 25.86115045036334 15.280692674178095 13 21.980499106098435 34.89780325823802 26.543283604726774 16.578414030936766 14 16.611212540026504 37.098526342132054 29.22764250762613 17.062618610215313 15 15.829735924605137 25.030381277928498 43.16037333424335 15.979509463223012 16 18.79278736138838 21.469183620462477 41.74055810549745 17.997470912651693 17 19.35623920540398 21.45231039902325 29.470882317811864 29.720568077760905 18 21.666164261758645 24.40474497737282 33.82265675507097 20.106434005797563 19 27.433772605851026 25.184894485489977 27.100668672494564 20.280664236164434 20 29.841714015959415 25.030191691170756 26.561294346712472 18.56679994615736 21 23.739295457690872 27.9219585070422 29.19655027935609 19.14219575591084 22 22.563478386161684 24.2839782126898 28.72618553339286 24.42635786775565 23 20.83046583362245 29.062322854873234 28.29373813897847 21.813473172525846 24 20.174495651827712 24.568358349306017 36.944013134570575 18.313132864295696 25 19.167410794690813 25.982106801804107 34.439761651528165 20.410720751976914 26 18.108568752689763 33.36309845429916 28.350803753059456 20.177529039951615 27 18.25075882099787 32.64020414702074 29.847780792207224 19.261256239774163 28 17.14698471741146 28.89662402860485 36.45772310095685 17.49866815302685 29 18.326403937337783 25.704551788466677 36.16196775887598 19.807076515319558 30 19.853714857724615 28.921649480627075 31.596908219154706 19.627727442493597 31 27.45538549623386 26.425929401683153 26.945776291417594 19.172908810665394 32 28.376208378597173 27.104839581164935 27.433962192608767 17.084989847629124 33 27.349975258928115 26.974972652110196 26.614189052123088 19.0608630368386 34 20.46664884551144 27.806310584818274 28.85624204920535 22.870798520464945 35 20.245021925708535 26.353317673467142 31.742700435859955 21.658959964964367 36 27.16816155825148 26.173779013883436 27.126073298032278 19.531986129832806 37 21.567010387458456 32.14234932118462 27.34371889592256 18.946921395434373 38 20.962607803770123 32.15808502207737 25.605208327408747 21.27409884674375 39 21.236750255468156 30.335966693398397 27.193945357304685 21.233337693828762 40 23.4306482160834 26.33170478308431 27.321726832024236 22.91592016880805 41 18.72681116969342 26.07424596606776 28.41090275526435 26.78804010897447 42 21.419891063449 27.056305371182432 25.894896893241803 25.628906672126767 43 21.346710574959758 26.84965580524132 26.796950686588445 25.006682933210485 44 20.30531051467117 29.222144491651548 28.932835099333982 21.5397098943433 45 19.067877746875137 33.55533942665173 25.24916439636524 22.127618430107894 46 21.315428759931976 31.718622917626448 26.728509867042803 20.237438455398767 47 21.322633056726254 27.672841507366392 27.98926180604137 23.01526362986598 48 21.62900525724079 25.270398113232588 31.175267269931727 21.92532935959489 49 21.19162860712505 25.15304391018896 31.83199579875745 21.82333168392854 50 19.50354811617118 31.617194002233333 27.50998648246417 21.36927139913131 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 173.0 1 413.5 2 654.0 3 2525.5 4 4397.0 5 3355.0 6 2313.0 7 2261.0 8 2209.0 9 2351.5 10 2494.0 11 2482.0 12 2470.0 13 2358.0 14 2246.0 15 2171.0 16 2096.0 17 2005.0 18 1914.0 19 1876.5 20 1839.0 21 2063.0 22 2287.0 23 2611.0 24 2935.0 25 3743.5 26 4552.0 27 5145.0 28 5738.0 29 7159.0 30 8580.0 31 10043.0 32 11506.0 33 13345.5 34 15185.0 35 16500.0 36 17815.0 37 19591.5 38 21368.0 39 24734.0 40 28100.0 41 34806.0 42 41512.0 43 46438.5 44 51365.0 45 50363.5 46 49362.0 47 45974.0 48 42586.0 49 40891.5 50 39197.0 51 36663.0 52 34129.0 53 31403.0 54 28677.0 55 25780.0 56 22883.0 57 21493.5 58 20104.0 59 19357.5 60 18611.0 61 16519.0 62 14427.0 63 12102.0 64 9777.0 65 7716.0 66 5655.0 67 4429.0 68 3203.0 69 2637.0 70 2071.0 71 1672.5 72 1274.0 73 1083.0 74 892.0 75 668.5 76 445.0 77 322.0 78 199.0 79 151.0 80 103.0 81 88.0 82 73.0 83 42.5 84 12.0 85 19.0 86 26.0 87 15.5 88 5.0 89 4.0 90 3.0 91 2.0 92 1.0 93 0.5 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 527463.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 30.407691418396748 #Duplication Level Percentage of deduplicated Percentage of total 1 73.92052811233087 22.477526083246794 2 5.982395054092696 3.638216454955873 3 2.670877800541535 2.4364568392533967 4 1.804478670969318 2.1948012239165484 5 1.419510684028162 2.1582021422522817 6 1.293877375290024 2.3606294376638504 7 1.1429307512380071 2.432771991736919 8 1.0293890463907966 2.5041075577703236 9 0.9602970262718431 2.628037408039042 >10 9.661121322482888 54.109034620539596 >50 0.0998078136072601 1.9331724142646638 >100 0.013554147526911867 0.5880635922450606 >500 6.160976148596304E-4 0.10266290173631513 >1k 6.160976148596304E-4 0.4363173323793394 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 2329 0.44154755878611396 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATA 548 0.1038935432437915 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.008341817340742384 0.0 2 0.0 0.0 0.0 0.0386756985798056 0.0 3 0.0 0.0 0.0 0.062374043297823735 0.0 4 0.0 0.0 0.0 0.10825403867190685 0.0 5 0.0 0.0 0.0 0.2178351846480227 0.0 6 0.0 0.0 0.0 0.32931219820158003 0.0 7 0.0 0.0 0.0 0.40344062047954077 0.0 8 0.0 0.0 0.0 0.5734999421760388 0.0 9 0.0 0.0 0.0 0.6332197708654446 0.0 10 0.0 0.0 0.0 0.7642242204666488 0.0 11 0.0 0.0 0.0 0.8705823915611143 0.0 12 0.0 0.0 0.0 0.9811114713259508 0.0 13 0.0 0.0 0.0 1.027181053457778 0.0 14 0.0 0.0 0.0 1.0450022086857278 0.0 15 0.0 0.0 0.0 1.079317411837418 0.0 16 0.0 0.0 0.0 1.14984368571824 0.0 17 0.0 0.0 0.0 1.2279534299088277 0.0 18 0.0 0.0 0.0 1.3477722608031275 0.0 19 0.0 0.0 0.0 1.4046482881263709 0.0 20 0.0 0.0 0.0 1.4615243154496145 0.0 21 0.0 0.0 0.0 1.5347048039388544 0.0 22 0.0 0.0 0.0 1.616606283284325 0.0 23 0.0 0.0 0.0 1.7091246210634679 0.0 24 0.0 0.0 0.0 1.7857176711921026 0.0 25 0.0 0.0 0.0 1.8456270866392523 0.0 26 0.0 0.0 0.0 1.9138783194271447 0.0 27 0.0 0.0 0.0 1.9785274038178982 0.0 28 0.0 0.0 0.0 2.0482953306677434 0.0 29 0.0 0.0 0.0 2.133798958410353 0.0 30 0.0 0.0 0.0 2.2266964697049842 0.0 31 0.0 0.0 0.0 2.3235753029122423 0.0 32 0.0 0.0 0.0 2.4075622365928986 0.0 33 0.0 0.0 0.0 2.4979951200368555 0.0 34 0.0 0.0 0.0 2.585963375630139 0.0 35 0.0 0.0 0.0 2.6959236951217433 0.0 36 0.0 0.0 0.0 2.809486163010486 0.0 37 0.0 0.0 0.0 2.9122421857078127 0.0 38 0.0 0.0 0.0 3.027700521173997 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TTTCGCG 20 7.852604E-4 44.0 1 TCGATAG 35 1.4440957E-7 44.0 1 TCTAGCG 25 4.439555E-5 44.0 1 AACGGTA 20 7.852604E-4 44.0 29 TCGCTAA 20 7.852604E-4 44.0 27 GACGATA 25 4.439555E-5 44.0 9 CGGTATT 20 7.852604E-4 44.0 31 TGCGTAG 35 1.4440957E-7 44.0 1 CGTTTTT 1795 0.0 42.774372 1 GCCCTAC 85 0.0 41.411766 26 ACGGGAT 225 0.0 41.066666 5 TCGTCCC 70 0.0 40.857143 38 TAGGGTC 140 0.0 40.857143 5 TGACGGG 265 0.0 40.679245 3 CGTAAGG 65 0.0 40.615383 2 TACGGGA 240 0.0 40.333332 4 CGAGGGT 60 3.6379788E-12 40.333332 4 CGGTCTA 55 7.8216544E-11 40.0 31 TACGTAG 55 7.8216544E-11 40.0 1 TGGGCGA 215 0.0 39.906975 6 >>END_MODULE