##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546542_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1136013 Sequences flagged as poor quality 0 Sequence length 50 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 30.648132547778943 31.0 30.0 31.0 28.0 33.0 2 30.9655470491975 31.0 31.0 33.0 28.0 34.0 3 31.14054064522149 31.0 31.0 34.0 28.0 34.0 4 34.95699609071375 35.0 35.0 37.0 32.0 37.0 5 34.750370814418496 35.0 35.0 37.0 32.0 37.0 6 34.79486414328005 35.0 35.0 37.0 32.0 37.0 7 35.40703407443401 35.0 35.0 37.0 33.0 37.0 8 34.361595333856215 35.0 35.0 37.0 33.0 37.0 9 36.50928202406134 39.0 37.0 39.0 32.0 39.0 10 35.99006437426332 38.0 35.0 39.0 30.0 39.0 11 35.67321764803748 37.0 35.0 39.0 30.0 39.0 12 34.793688980671874 37.0 33.0 39.0 29.0 39.0 13 34.23538991191122 37.0 33.0 39.0 25.0 39.0 14 35.112106111461756 37.0 33.0 40.0 25.0 41.0 15 35.62929385491187 37.0 33.0 40.0 29.0 41.0 16 35.85224993023847 37.0 34.0 40.0 30.0 41.0 17 35.80734903561843 37.0 34.0 40.0 30.0 41.0 18 35.73198986279206 37.0 34.0 40.0 29.0 41.0 19 35.69816014429412 37.0 34.0 40.0 29.0 41.0 20 35.4810481922302 36.0 34.0 40.0 29.0 41.0 21 35.25607453435832 36.0 34.0 40.0 29.0 41.0 22 35.219247491005824 36.0 33.0 40.0 28.0 41.0 23 35.23133185975865 36.0 34.0 40.0 29.0 41.0 24 35.15097538496479 36.0 34.0 40.0 29.0 41.0 25 34.97882330571921 36.0 33.0 40.0 27.0 41.0 26 34.80275489805134 36.0 33.0 40.0 27.0 41.0 27 34.624533346009244 35.0 33.0 40.0 27.0 41.0 28 34.67107946828073 36.0 33.0 40.0 26.0 41.0 29 34.59303810783855 36.0 33.0 39.0 26.0 41.0 30 34.63786329909957 36.0 33.0 39.0 27.0 41.0 31 34.51241579101647 36.0 33.0 40.0 26.0 41.0 32 34.26866946064878 35.0 33.0 40.0 25.0 41.0 33 34.11043359539019 35.0 33.0 40.0 24.0 41.0 34 34.08224641795472 35.0 33.0 40.0 24.0 41.0 35 33.875182766394396 35.0 32.0 39.0 23.0 41.0 36 33.742217738705456 35.0 32.0 40.0 23.0 41.0 37 33.75475104598275 35.0 32.0 40.0 23.0 41.0 38 33.82527752763393 35.0 32.0 40.0 23.0 41.0 39 33.77811345468758 35.0 32.0 40.0 23.0 41.0 40 33.66651878103507 35.0 32.0 40.0 23.0 41.0 41 33.752892792600086 35.0 32.0 40.0 23.0 41.0 42 33.59730830545073 35.0 32.0 39.0 23.0 41.0 43 33.617969160564186 35.0 32.0 39.0 23.0 41.0 44 33.25568809511863 35.0 32.0 39.0 23.0 41.0 45 33.231062496643965 35.0 31.0 39.0 23.0 41.0 46 33.23384063386599 35.0 32.0 39.0 23.0 41.0 47 33.18331744443066 35.0 31.0 39.0 23.0 41.0 48 33.26386141707886 35.0 32.0 39.0 23.0 41.0 49 33.290979944771756 35.0 32.0 39.0 23.0 41.0 50 32.66660064629542 35.0 31.0 38.0 21.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 1.0 11 1.0 12 2.0 13 7.0 14 12.0 15 64.0 16 153.0 17 415.0 18 899.0 19 1727.0 20 2960.0 21 4455.0 22 6918.0 23 9711.0 24 13460.0 25 18400.0 26 23592.0 27 28299.0 28 32778.0 29 38217.0 30 45198.0 31 54889.0 32 66107.0 33 82970.0 34 121067.0 35 135005.0 36 89101.0 37 105539.0 38 125517.0 39 128549.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 35.58286744958024 23.25686413799842 28.057425399181174 13.102843013240165 2 31.806238132838267 25.25243989285334 29.50890526780944 13.432416706498957 3 29.86400683794992 25.718455686686685 31.215311796607963 13.202225678755436 4 27.34062022177563 27.219670901653416 30.00141723730274 15.438291639268211 5 22.76408808702013 32.39927712094844 29.905731712577232 14.930903079454197 6 20.441139317947947 41.87733767131186 27.634630941723376 10.046892069016817 7 88.18305776430375 4.035077063378676 6.248343989021253 1.5335211832963178 8 86.915290582062 5.768595957968791 5.7939477805271595 1.5221656794420486 9 85.45342350835774 4.777322090504247 7.235040444079425 2.53421395705859 10 51.51701609048488 24.900419273370993 12.96534458672568 10.617220049418448 11 44.85943382690163 21.358118260970606 21.313224408523492 12.469223503604272 12 39.54514605026527 22.724739945757662 23.74946413465339 13.980649869323678 13 21.07114971395574 39.69259154604745 23.925166349328748 15.311092390668065 14 15.558272660612158 40.47946634413515 28.479955775153982 15.482305220098713 15 15.08142952589451 23.01857461138209 47.09435543431281 14.805640428410591 16 17.839760636542014 19.670109408959227 43.54633265640446 18.9437972980943 17 18.465281647305094 19.544230567783995 28.029784870419615 33.9607029144913 18 23.22174130049568 23.86803672141076 33.29521757233412 19.615004405759443 19 30.271924705087 24.816529388308055 25.168109871982097 19.743436034622842 20 31.579568191561187 24.42700919795812 24.789064913869822 19.204357696610867 21 22.66039209058347 28.587612993865385 28.229694554551756 20.52230036099939 22 22.75775013138054 24.519173636217193 26.801805965248636 25.921270267153634 23 20.47767059003726 29.394822066296776 26.58235425122776 23.545153092438202 24 20.00214786274453 23.711436400815835 38.19692204226536 18.089493694174273 25 18.24274898262608 25.81106026075406 34.96289215000181 20.98329860661806 26 17.642051631451398 34.90197735413239 26.841330160834424 20.614640853581783 27 18.330424035640437 32.91766907597008 29.32871366788936 19.423193220500117 28 16.583789093962835 27.506023258536654 37.906608463107375 18.003579184393136 29 17.304819575128104 25.499003972665808 36.882412437181614 20.31376401502448 30 20.370981670104126 29.59878099986532 31.021299932307112 19.00893739772344 31 29.515067169125704 25.861763905870795 24.991087249881826 19.632081675121675 32 30.57966766225387 25.910266871946007 25.86827791583371 17.641787549966416 33 27.88938154757032 27.033581481902058 25.63474185594707 19.442295114580553 34 19.84334686310808 27.568434516154305 28.7153404054355 23.872878215302112 35 20.35900997611823 26.39899367348789 31.357915798498787 21.884080551895092 36 29.336284003792212 25.483071056405166 26.472760434959813 18.707884504842813 37 21.048086597600555 32.519962359585676 27.40576032140477 19.026190721408998 38 20.7428084009602 33.074621505211645 24.243560593056593 21.939009500771558 39 21.624312397833474 31.306595963250423 25.970741532007118 21.09835010690899 40 24.843817808422965 25.235802759299407 25.9658120109541 23.954567421323524 41 18.41228929598517 24.82295537110931 27.30919452506265 29.45556080784287 42 22.30194548829987 26.415806861365144 24.11416066541492 27.168086984920066 43 21.674047744171943 26.8915056429812 26.276283810132455 25.158162802714408 44 20.191934423285648 30.30079761411181 28.612084544807146 20.895183417795398 45 18.38508890303192 36.33937287689489 23.646560382671677 21.628977837401507 46 21.809785627453206 32.23466632864236 25.925055435105055 20.03049260879937 47 20.962260114981078 27.71896096259462 27.503646525171803 23.815132397252498 48 23.16971724795403 24.26433500320859 30.829840855694435 21.73610689314295 49 20.6407849205951 25.244253366818864 31.71838702550059 22.396574687085447 50 19.49792828075031 33.11484991809073 26.60876239972606 20.778459401432904 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 424.0 1 929.0 2 1434.0 3 4806.5 4 8179.0 5 6189.0 6 4199.0 7 4229.0 8 4259.0 9 4573.5 10 4888.0 11 4855.5 12 4823.0 13 4572.5 14 4322.0 15 4228.5 16 4135.0 17 3944.5 18 3754.0 19 3651.0 20 3548.0 21 4164.0 22 4780.0 23 5801.0 24 6822.0 25 7382.0 26 7942.0 27 9853.0 28 11764.0 29 14260.0 30 16756.0 31 18932.5 32 21109.0 33 24500.0 34 27891.0 35 31616.5 36 35342.0 37 38047.5 38 40753.0 39 50956.0 40 61159.0 41 77535.5 42 93912.0 43 104697.0 44 115482.0 45 112671.0 46 109860.0 47 100944.5 48 92029.0 49 85817.0 50 79605.0 51 76350.5 52 73096.0 53 66794.0 54 60492.0 55 55349.5 56 50207.0 57 46687.5 58 43168.0 59 40516.5 60 37865.0 61 35234.5 62 32604.0 63 28187.0 64 23770.0 65 19442.5 66 15115.0 67 12831.0 68 10547.0 69 8858.5 70 7170.0 71 6198.5 72 5227.0 73 4485.5 74 3744.0 75 2734.5 76 1725.0 77 1360.0 78 995.0 79 800.0 80 605.0 81 453.5 82 302.0 83 215.5 84 129.0 85 97.5 86 66.0 87 37.0 88 8.0 89 4.5 90 1.0 91 2.0 92 3.0 93 3.0 94 3.0 95 1.5 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 1136013.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 25.324749362064164 #Duplication Level Percentage of deduplicated Percentage of total 1 78.22279026446392 19.809725578488617 2 7.557395039243548 3.827782703978998 3 2.80540947447394 2.13138875397038 4 1.3898211627879244 1.4078749042278704 5 0.8310953768461335 1.0523641057299298 6 0.5905288069337996 0.8972996416006351 7 0.4411330197230589 0.7820108211871882 8 0.361799615996942 0.7329987675530892 9 0.3265969994176447 0.744388843738866 >10 5.843508598787653 37.89488237749233 >50 1.4768561840885093 24.962077116207475 >100 0.15237128282758458 5.221813792217897 >500 0.0 0.0 >1k 6.941744092372506E-4 0.5353925936067789 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 4368 0.38450264213525726 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATA 1723 0.15167079954190665 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.012147748309218293 0.0 2 0.0 0.0 0.0 0.042957254890569035 0.0 3 0.0 0.0 0.0 0.06505207246748057 0.0 4 0.0 0.0 0.0 0.09471722594723828 0.0 5 0.0 0.0 0.0 0.15959324409139683 0.0 6 0.0 0.0 0.0 0.24436340077094187 0.0 7 0.0 0.0 0.0 0.3069507127119144 0.0 8 0.0 0.0 0.0 0.47596286310103847 0.0 9 0.0 0.0 0.0 0.5630217259837695 0.0 10 0.0 0.0 0.0 0.6968230117084928 0.0 11 0.0 0.0 0.0 0.7981422747803062 0.0 12 0.0 0.0 0.0 0.8981411304272047 0.0 13 0.0 0.0 0.0 0.9445314446225528 0.0 14 0.0 0.0 0.0 0.9664502078761422 0.0 15 0.0 0.0 0.0 0.9922421662428159 0.0 16 0.0 0.0 0.0 1.0442662187844682 0.0 17 0.0 0.0 0.0 1.1028923084506956 0.0 18 0.0 0.0 0.0 1.208788983928881 0.0 19 0.0 0.0 0.0 1.2556194339325342 0.0 20 0.0 0.0 0.0 1.3007773678646284 0.0 21 0.0 0.0 0.0 1.3550901266094666 0.0 22 0.0 0.0 0.0 1.414860569377287 8.802716166100212E-5 23 0.0 0.0 0.0 1.4767436640249716 8.802716166100212E-5 24 0.0 0.0 0.0 1.5254226844235057 8.802716166100212E-5 25 0.0 0.0 0.0 1.5713728628105488 8.802716166100212E-5 26 0.0 0.0 0.0 1.617851204167558 1.7605432332200424E-4 27 0.0 0.0 0.0 1.6683787949609732 1.7605432332200424E-4 28 0.0 0.0 0.0 1.7188183585927275 1.7605432332200424E-4 29 0.0 0.0 0.0 1.7785888013605478 1.7605432332200424E-4 30 0.0 0.0 0.0 1.8591336542803647 1.7605432332200424E-4 31 0.0 0.0 0.0 1.9249779712027943 1.7605432332200424E-4 32 0.0 0.0 0.0 1.9868610658504788 1.7605432332200424E-4 33 0.0 0.0 0.0 2.0507687852163663 1.7605432332200424E-4 34 0.0 0.0 0.0 2.126208062759845 1.7605432332200424E-4 35 0.0 0.0 0.0 2.2139711429358644 1.7605432332200424E-4 36 0.0 0.0 0.0 2.288090013054428 1.7605432332200424E-4 37 0.0 0.0 0.0 2.367754594357635 1.7605432332200424E-4 38 0.0 0.0 0.0 2.454197267108739 1.7605432332200424E-4 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TTTACGT 25 4.4428078E-5 44.0 20 TATTACG 25 4.4428078E-5 44.0 1 TTACGCT 35 1.4460602E-7 44.0 40 TATCGCG 20 7.8564446E-4 44.0 1 CGTTTTT 3440 0.0 42.40116 1 ACGGGAC 120 0.0 42.166664 5 CGGGTAT 115 0.0 42.08696 6 TATACGG 165 0.0 41.33333 2 TACGGGA 240 0.0 41.25 4 AGTACGG 100 0.0 39.6 2 ACGGGCT 135 0.0 39.11111 5 ACGGGAT 315 0.0 39.11111 5 GTTGCGT 45 2.3508619E-8 39.11111 37 ACGATTG 85 0.0 38.823532 1 CGTTAGG 125 0.0 38.72 2 CTACGGG 195 0.0 38.358974 3 AAGTGCG 75 0.0 38.13333 1 GTAGGGC 425 0.0 37.788235 4 CTTAACG 35 7.290133E-6 37.714287 1 GACCGTT 35 7.290133E-6 37.714287 18 >>END_MODULE