##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546538_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1668085 Sequences flagged as poor quality 0 Sequence length 50 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 30.584222027054977 31.0 30.0 31.0 28.0 33.0 2 30.913564956222256 31.0 31.0 33.0 28.0 34.0 3 31.05937527164383 31.0 31.0 34.0 28.0 34.0 4 34.887122059127684 35.0 35.0 37.0 32.0 37.0 5 34.671205604030966 35.0 35.0 37.0 32.0 37.0 6 34.713064981700576 35.0 35.0 37.0 32.0 37.0 7 35.36299469151752 35.0 35.0 37.0 33.0 37.0 8 34.34242919275697 35.0 35.0 37.0 32.0 37.0 9 36.436595257435926 39.0 37.0 39.0 32.0 39.0 10 35.91035948407905 38.0 35.0 39.0 30.0 39.0 11 35.569895418998435 37.0 35.0 39.0 30.0 39.0 12 34.988792537550545 37.0 34.0 39.0 30.0 39.0 13 34.62669528231475 37.0 33.0 39.0 27.0 39.0 14 35.50997880803436 38.0 33.0 40.0 27.0 41.0 15 35.840721545964385 38.0 33.0 40.0 29.0 41.0 16 35.997549885047825 38.0 34.0 40.0 30.0 41.0 17 35.8581810878942 38.0 34.0 40.0 29.0 41.0 18 35.79926682393283 37.0 34.0 40.0 29.0 41.0 19 35.76432615843917 37.0 34.0 40.0 29.0 41.0 20 35.496798424540714 37.0 34.0 40.0 29.0 41.0 21 35.333086143691716 37.0 34.0 40.0 28.0 41.0 22 35.25828120269651 37.0 33.0 40.0 27.0 41.0 23 35.13745222815384 36.0 33.0 40.0 27.0 41.0 24 35.110025568241426 36.0 33.0 40.0 27.0 41.0 25 34.96404379872728 36.0 33.0 40.0 27.0 41.0 26 34.71520695887799 36.0 33.0 40.0 26.0 41.0 27 34.46911578246912 36.0 33.0 40.0 25.0 41.0 28 34.475783308404544 36.0 33.0 40.0 25.0 41.0 29 34.307675568091554 36.0 33.0 39.0 25.0 41.0 30 34.387438889505034 36.0 33.0 39.0 25.0 41.0 31 34.30997341262586 36.0 33.0 40.0 24.0 41.0 32 33.987519221142804 36.0 32.0 40.0 23.0 41.0 33 33.75631217833624 36.0 32.0 40.0 23.0 41.0 34 33.61788158277306 36.0 32.0 40.0 23.0 41.0 35 33.35312648935756 35.0 32.0 40.0 21.0 41.0 36 33.26848092273475 35.0 31.0 40.0 20.0 41.0 37 33.23811556365533 35.0 31.0 40.0 20.0 41.0 38 33.27885389533507 35.0 31.0 40.0 20.0 41.0 39 33.191293609138626 35.0 31.0 40.0 19.0 41.0 40 33.11526331092241 35.0 31.0 40.0 19.0 41.0 41 33.181071707976514 35.0 31.0 40.0 20.0 41.0 42 32.998267474379304 35.0 31.0 39.0 18.0 41.0 43 33.02904588195446 35.0 31.0 39.0 19.0 41.0 44 32.690750171603966 35.0 31.0 39.0 18.0 41.0 45 32.67097899687366 35.0 31.0 39.0 18.0 41.0 46 32.62813525689638 35.0 31.0 39.0 18.0 41.0 47 32.559686107122836 35.0 31.0 39.0 18.0 41.0 48 32.640093880108026 35.0 31.0 39.0 19.0 41.0 49 32.67095981319897 35.0 31.0 39.0 19.0 41.0 50 32.06363284844597 35.0 30.0 38.0 18.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 1.0 9 1.0 10 2.0 11 2.0 12 4.0 13 11.0 14 36.0 15 99.0 16 280.0 17 776.0 18 1702.0 19 3233.0 20 5769.0 21 9376.0 22 14179.0 23 19179.0 24 25973.0 25 32782.0 26 40563.0 27 46331.0 28 51412.0 29 57732.0 30 66072.0 31 78457.0 32 93114.0 33 114017.0 34 158958.0 35 172888.0 36 137260.0 37 160300.0 38 190245.0 39 187331.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 35.23027903254331 22.660415985995918 26.978241516469488 15.131063464991293 2 33.31808630855142 26.07517003030421 27.570117829726904 13.036625831417464 3 29.482670247619275 26.13062283996319 31.462965016770728 12.923741895646804 4 26.846593548889896 26.436842247247593 31.920495658194874 14.796068545667637 5 24.147150774690736 31.232341277572782 29.93894196039171 14.681565987344769 6 20.10598980267792 42.05013533483006 27.839828306111496 10.004046556380521 7 84.71444800474795 4.017481123563847 9.617855205220357 1.6502156664678358 8 83.15625402782231 7.353222407731021 7.7846752413695945 1.7058483230770614 9 80.82256000143877 5.240080691331677 9.566119232533115 4.371240074696433 10 46.825851200628264 27.52203874502798 14.706984356312777 10.945125698030976 11 38.88548844932962 23.008120089803576 24.344982419960616 13.761409040906189 12 34.0442483446587 21.99468252517108 26.63377465776624 17.327294472403985 13 24.345941603695255 31.44318185224374 27.111568055584694 17.099308488476307 14 17.488257492873565 35.55724078808933 29.790927920339787 17.16357379869731 15 17.607915663770132 23.943923720913503 40.82297964432268 17.625180970993686 16 20.440265334200593 21.000188839297756 39.01335963095406 19.546186195547588 17 20.438586762664972 22.103250134135852 29.990617984095536 27.467545119103644 18 22.49022082208041 23.650653294046766 32.31909644892197 21.54002943495086 19 28.059001789477158 24.50096967480674 27.07925555352395 20.360772982192156 20 30.831762170392995 24.504566613811647 25.91948252037516 18.744188695420196 21 24.948848529901056 27.439788739782443 28.391718647431034 19.219644082885466 22 22.88036880614597 23.99326173426414 29.68116133170672 23.44520812788317 23 23.258107350644604 27.474019609312478 27.634862731815225 21.6330103082277 24 21.625276889367147 25.04482685234865 34.18830575180522 19.141590506478988 25 20.675924788005407 26.040099875006366 32.453202324821575 20.830773012166645 26 19.68221043891648 30.442513421078658 29.043304148169906 20.831971991834948 27 21.693139138593057 28.595125548158517 29.2622378356019 20.44949747764652 28 18.671830272438157 28.60345845685322 34.06061441713102 18.664096853577604 29 19.76086350515711 25.928055225003522 34.57527643974977 19.73580483008959 30 21.242622528228477 27.95343162968314 30.758204767742654 20.04574107434573 31 26.576703225555054 25.10597481543207 26.857863957771936 21.459458001240943 32 29.059490373691986 25.960667471981342 26.769798901135132 18.210043253191536 33 27.98592397869413 26.26143152177497 25.982908544828355 19.769735954702547 34 21.275654418090205 27.208145867866445 28.630915091257343 22.88528462278601 35 22.21685345770749 25.87571976248213 30.062496815210256 21.844929964600126 36 26.840059109697645 27.79714462991994 25.92146083682786 19.441335423554555 37 22.756034614543026 30.837097629916943 26.546488937913836 19.860378817626202 38 22.449275666407885 31.197091275324702 24.5218319210352 21.831801137232215 39 22.847217018317412 29.483329686436843 25.914986346619028 21.754466948626717 40 23.895664789264337 25.424603662283396 26.792879259749952 23.886852288702315 41 20.459029366009528 25.740534804881047 26.87117263209009 26.92926319701934 42 22.239034581571083 26.90102722583082 25.3544034027043 25.5055347898938 43 22.294007799362742 27.0183473863742 25.870743996858675 24.816900817404388 44 21.812017972705227 28.692722493158325 28.136815569949974 21.358443964186478 45 20.618793406810802 31.445100219713023 25.597616428419418 22.338489945056754 46 22.526310110096308 30.527760875494952 26.135478707619814 20.810450306788923 47 22.176987383736442 27.610703291498933 27.25017010524044 22.962139219524186 48 22.62048996304145 25.03415593330076 29.770964908862556 22.57438919479523 49 21.98473099392417 25.013833227923037 30.625177973544517 22.37625780460828 50 20.549192637065858 30.221601417193966 27.014450702452216 22.21475524328796 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 647.0 1 1346.5 2 2046.0 3 11054.0 4 20062.0 5 15045.0 6 10028.0 7 9970.0 8 9912.0 9 9998.0 10 10084.0 11 10028.5 12 9973.0 13 9591.5 14 9210.0 15 8675.0 16 8140.0 17 7722.0 18 7304.0 19 7252.0 20 7200.0 21 7316.0 22 7432.0 23 8181.0 24 8930.0 25 10360.0 26 11790.0 27 14019.5 28 16249.0 29 19145.5 30 22042.0 31 25520.0 32 28998.0 33 33408.0 34 37818.0 35 42091.5 36 46365.0 37 51431.0 38 56497.0 39 65667.0 40 74837.0 41 93336.5 42 111836.0 43 124886.0 44 137936.0 45 138141.5 46 138347.0 47 132137.5 48 125928.0 49 123123.0 50 120318.0 51 113334.0 52 106350.0 53 101021.0 54 95692.0 55 90424.0 56 85156.0 57 82757.5 58 80359.0 59 77999.0 60 75639.0 61 67244.0 62 58849.0 63 49738.0 64 40627.0 65 34235.0 66 27843.0 67 22878.0 68 17913.0 69 16288.5 70 14664.0 71 12720.0 72 10776.0 73 8669.0 74 6562.0 75 5134.0 76 3706.0 77 2981.0 78 2256.0 79 1603.5 80 951.0 81 677.0 82 403.0 83 323.0 84 243.0 85 155.0 86 67.0 87 58.5 88 50.0 89 38.5 90 27.0 91 20.5 92 14.0 93 10.0 94 6.0 95 4.0 96 2.0 97 1.5 98 1.0 99 0.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 1668085.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 27.414799371544156 #Duplication Level Percentage of deduplicated Percentage of total 1 78.16489286059131 21.428748556713554 2 6.908732907954637 3.7880305316632246 3 2.6116952887052998 2.1479730707838876 4 1.3858962317995263 1.519762685782523 5 0.9216708030935961 1.263371007671046 6 0.7130112648794276 1.172823646579226 7 0.6012730178872706 1.1538645407031685 8 0.5106452659317456 1.1199390012438095 9 0.42530341382849246 1.0493646985926846 >10 6.70495702445036 43.86345493828884 >50 0.9729609693236309 17.40487710249859 >100 0.07701928955101961 3.047434081100151 >500 0.0010787011131407945 0.2038719504828604 >1k 6.472206678844768E-4 0.209372412158203 >5k 0.0 0.0 >10k+ 2.1574022262815895E-4 0.627111775738256 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 10603 0.6356390711504509 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.010191327180569336 0.0 2 0.0 0.0 0.0 0.048558676566242125 0.0 3 0.0 0.0 0.0 0.07643495385427002 0.0 4 0.0 0.0 0.0 0.12883036535907944 0.0 5 0.0 0.0 0.0 0.2540038427298369 0.0 6 0.0 0.0 0.0 0.38906890236408814 0.0 7 0.0 0.0 0.0 0.4997946747318032 0.0 8 0.0 0.0 0.0 0.7872500502072736 0.0 9 0.0 0.0 0.0 0.9490523564446656 0.0 10 0.0 0.0 0.0 1.2196021185970738 0.0 11 0.0 0.0 0.0 1.3278699826447693 0.0 12 0.0 0.0 0.0 1.4772628493152327 0.0 13 0.0 0.0 0.0 1.534334281526421 0.0 14 0.0 0.0 0.0 1.5608916811793163 0.0 15 0.0 0.0 0.0 1.5937437240907988 0.0 16 0.0 0.0 0.0 1.6468585233965896 0.0 17 0.0 0.0 0.0 1.7033904147570418 0.0 18 0.0 0.0 0.0 1.8027258802758852 0.0 19 0.0 0.0 0.0 1.8629746086080745 0.0 20 0.0 0.0 0.0 1.9124924689089584 0.0 21 0.0 0.0 0.0 1.9687246153523352 0.0 22 0.0 0.0 0.0 2.0257960475635235 0.0 23 0.0 0.0 0.0 2.0911404394859976 0.0 24 0.0 0.0 0.0 2.1423368713225046 0.0 25 0.0 0.0 0.0 2.1886174865189725 0.0 26 0.0 0.0 0.0 2.23232029542859 0.0 27 0.0 0.0 0.0 2.2847157069333996 0.0 28 0.0 0.0 0.0 2.3347131591016046 0.0 29 0.0 0.0 0.0 2.390225917744 0.0 30 0.0 0.0 0.0 2.4706774534870823 0.0 31 0.0 0.0 0.0 2.538359855762746 0.0 32 0.0 0.0 0.0 2.6056226151545037 0.0 33 0.0 0.0 0.0 2.671806292844789 0.0 34 0.0 0.0 0.0 2.7423062973409627 0.0 35 0.0 0.0 0.0 2.826894312939688 0.0 36 0.0 0.0 0.0 2.9008114094905237 0.0 37 0.0 0.0 0.0 2.98060350641604 0.0 38 5.9948983415113736E-5 0.0 0.0 3.068009124235276 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TCTAGCG 35 1.4466059E-7 44.0 1 CGTTTTT 8715 0.0 42.561104 1 CGATGAA 2180 0.0 40.669724 19 TTTAGCG 60 3.6379788E-12 40.333332 1 TAATGCG 60 3.6379788E-12 40.333332 1 CCGATGA 2190 0.0 39.378994 18 GTCGAAT 175 0.0 38.971428 43 CGAACCG 40 4.1260319E-7 38.5 37 CTAACCG 40 4.1260319E-7 38.5 1 TGCGTAG 160 0.0 37.125 1 TCGATAG 95 0.0 37.05263 1 CGTAAGG 280 0.0 36.928574 2 TAGGGCG 485 0.0 36.74227 5 ATAGCGC 30 1.3013474E-4 36.666664 41 CAATTCG 30 1.3013474E-4 36.666664 1 AACGGGA 420 0.0 36.666664 4 CGCAAGG 240 0.0 36.666664 2 GATGAAT 2495 0.0 36.593185 20 GCGATAC 145 0.0 36.41379 9 CGACCCG 715 0.0 36.307693 32 >>END_MODULE