##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546533_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 2115417 Sequences flagged as poor quality 0 Sequence length 50 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.45028852467386 31.0 31.0 33.0 30.0 34.0 2 31.843049857309456 31.0 31.0 34.0 30.0 34.0 3 31.960557658371847 33.0 31.0 34.0 30.0 34.0 4 35.63834317300088 37.0 35.0 37.0 33.0 37.0 5 35.53097001678629 37.0 35.0 37.0 33.0 37.0 6 35.56077785136453 37.0 35.0 37.0 33.0 37.0 7 36.02400425069856 37.0 35.0 37.0 35.0 37.0 8 36.013496157022466 37.0 35.0 37.0 35.0 37.0 9 37.701495733465315 39.0 37.0 39.0 35.0 39.0 10 37.09759068779347 39.0 37.0 39.0 33.0 39.0 11 36.88268554143226 39.0 37.0 39.0 32.0 39.0 12 36.52962607372447 39.0 35.0 39.0 32.0 39.0 13 36.42071752283356 39.0 35.0 39.0 32.0 39.0 14 37.51206026991369 40.0 36.0 41.0 32.0 41.0 15 37.658191269144574 40.0 36.0 41.0 33.0 41.0 16 37.69790495207328 40.0 36.0 41.0 33.0 41.0 17 37.63511165883606 40.0 35.0 41.0 33.0 41.0 18 37.53111655999739 39.0 36.0 41.0 32.0 41.0 19 37.48795958432782 39.0 36.0 41.0 33.0 41.0 20 37.31378115993206 39.0 35.0 41.0 32.0 41.0 21 37.21097306110332 39.0 35.0 41.0 32.0 41.0 22 37.14980923382955 39.0 35.0 41.0 32.0 41.0 23 37.03425991187553 39.0 35.0 41.0 32.0 41.0 24 36.989523578566306 39.0 35.0 41.0 32.0 41.0 25 36.84386766297141 38.0 35.0 41.0 31.0 41.0 26 36.745722474575935 38.0 35.0 41.0 31.0 41.0 27 36.63277405825896 38.0 35.0 41.0 31.0 41.0 28 36.68965693288841 38.0 35.0 41.0 31.0 41.0 29 36.610513671772516 38.0 35.0 41.0 31.0 41.0 30 36.58634964170185 38.0 35.0 41.0 31.0 41.0 31 36.44495624266988 38.0 35.0 41.0 31.0 41.0 32 36.19302624494367 38.0 35.0 41.0 30.0 41.0 33 36.06779467121613 38.0 35.0 41.0 30.0 41.0 34 35.925684628609865 38.0 35.0 41.0 29.0 41.0 35 35.72642935175429 38.0 35.0 41.0 28.0 41.0 36 35.575456281196566 38.0 35.0 41.0 27.0 41.0 37 35.53074216572902 38.0 35.0 41.0 27.0 41.0 38 35.474816549172104 38.0 35.0 41.0 27.0 41.0 39 35.37065741648101 38.0 35.0 40.0 26.0 41.0 40 35.2638846147119 38.0 35.0 40.0 25.0 41.0 41 35.249078077750156 38.0 35.0 40.0 25.0 41.0 42 35.05227054524001 38.0 34.0 40.0 24.0 41.0 43 35.08229724919484 38.0 34.0 40.0 25.0 41.0 44 34.75009040770685 38.0 34.0 40.0 23.0 41.0 45 34.69841501699192 38.0 34.0 40.0 23.0 41.0 46 34.72086260061255 38.0 34.0 40.0 23.0 41.0 47 34.64952914720833 37.0 34.0 40.0 23.0 41.0 48 34.61941120828659 37.0 34.0 40.0 23.0 41.0 49 34.59928231644163 37.0 34.0 40.0 24.0 41.0 50 34.065123803013776 37.0 33.0 40.0 23.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 1.0 9 2.0 10 1.0 11 3.0 12 3.0 13 10.0 14 19.0 15 56.0 16 161.0 17 365.0 18 853.0 19 1798.0 20 3043.0 21 4810.0 22 7527.0 23 11323.0 24 16278.0 25 23582.0 26 32602.0 27 38574.0 28 41441.0 29 43109.0 30 48779.0 31 58661.0 32 71783.0 33 92506.0 34 145475.0 35 223113.0 36 154425.0 37 197221.0 38 301943.0 39 595950.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 34.57578340346135 24.03086483657832 24.970159547739286 16.423192212221043 2 33.206786179746125 26.087433352383947 27.099810581081652 13.60596988678828 3 28.77692672413997 25.845589782061886 32.494066181750455 12.883417312047696 4 25.29118372406008 28.578904301137793 31.367810696425337 14.762101278376793 5 23.03555280117348 31.75047756541618 30.916363062223667 14.297606571186675 6 20.302758274136966 40.18498480441445 28.74246543352918 10.769791487919402 7 84.26461543988727 4.3801293078385966 9.163157902200842 2.192097350073295 8 84.10667967592205 3.941634202618207 8.847522734288322 3.1041633871714183 9 77.72325740031398 6.360353537860385 11.708991655073207 4.207397406752428 10 37.684437630972994 29.953337805264873 17.942561679328474 14.41966288443366 11 30.753889185914645 26.18268643960032 28.137289243681035 14.926135130803997 12 28.500527319199946 23.568213737527874 29.992951744266023 17.938307199006154 13 22.504924560973087 30.035543819492798 30.888425308107102 16.571106311427013 14 18.53658167633143 32.74191329652735 31.10738922869581 17.61411579844541 15 17.550251321607043 24.6898838385056 40.966012847585134 16.793851992302226 16 19.400288453765853 23.784908601944675 38.36699809068377 18.447804853605696 17 19.98939216239635 23.278341811567177 31.29609906699247 25.43616695904401 18 21.65445394454143 24.171688135247095 34.0217555214882 20.15210239872328 19 25.599822635442564 26.357923756876307 29.15179371253989 18.89045989514124 20 26.944994769352803 25.3903603875737 28.271730821866324 19.392914021207165 21 23.415619709967352 27.75462237469019 29.89557141688849 18.93418649845397 22 22.487197559630086 25.72651160504052 29.022977502780776 22.76331333254862 23 19.802951380271598 29.494941186536742 28.796402789615478 21.905704643576186 24 19.395750341422048 26.220740402483294 34.29980944655357 20.0836998095411 25 19.66671346595021 26.794669797964183 32.39758402244097 21.141032713644638 26 18.77459621436341 29.697974441918547 30.356284363792103 21.171144979925945 27 19.68018598697089 29.13799028749414 30.364462420411677 20.817361305123292 28 18.87117291768006 28.196710152182764 34.078954645821604 18.853162284315577 29 19.50031601334394 25.937675645038304 33.54374102127382 21.018267320343934 30 20.444621556884528 27.81683233140322 31.559593214954784 20.178952896757473 31 23.56249382509453 27.026349887516265 27.914354474791498 21.496801812597706 32 24.541733379281723 27.923714331500598 28.57403528476891 18.960517004448768 33 23.464215329648955 28.401917919729303 27.305491068664 20.82837568195774 34 20.393756881031024 28.264356389307636 29.8851715761006 21.45671515356074 35 20.06488555211573 27.798679882027987 29.99474808040212 22.14168648545417 36 24.482312470779995 27.00748835808732 28.569875348453756 19.94032382267893 37 22.04662248625212 28.648205058388015 28.63411800132078 20.671054454039087 38 21.62202535008464 29.34121263089027 28.063828550115648 20.972933468909442 39 21.677049962253307 27.853751766200237 28.289883271241557 22.179315000304907 40 23.406827117301223 25.68760674609309 29.298856915681398 21.60670922092429 41 20.326252459916887 25.594197267016384 29.172498850108514 24.907051422958215 42 22.471692342455412 27.50237896358023 27.414925756954776 22.611002937009584 43 22.04307708598352 27.174689434754473 28.61312923173067 22.169104247531337 44 21.669628257691038 28.716607647570196 28.995512468700024 20.618251626038745 45 20.07911442519371 29.7461918855715 28.119231338312968 22.05546235092183 46 21.842312886773623 29.040326328095123 28.4247030254555 20.69265775967575 47 21.39686879702678 27.359381152746714 29.196229395906336 22.047520654320166 48 22.25967740639316 25.59334637095192 29.68970184129181 22.457274381363106 49 21.529703127090308 25.21313764614731 30.102197344542468 23.15496188221991 50 19.95200000756352 28.406314216062366 29.485534057824058 22.156151718550056 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 2308.0 1 2585.5 2 2863.0 3 15184.5 4 27506.0 5 19841.0 6 12176.0 7 12599.0 8 13022.0 9 13529.5 10 14037.0 11 14160.0 12 14283.0 13 13841.5 14 13400.0 15 12975.5 16 12551.0 17 12315.0 18 12079.0 19 11962.5 20 11846.0 21 11525.0 22 11204.0 23 12604.0 24 14004.0 25 16056.0 26 18108.0 27 21213.5 28 24319.0 29 28527.0 30 32735.0 31 38549.5 32 44364.0 33 50719.0 34 57074.0 35 62544.0 36 68014.0 37 71659.0 38 75304.0 39 88633.5 40 101963.0 41 121261.0 42 140559.0 43 154202.0 44 167845.0 45 177760.0 46 187675.0 47 188049.5 48 188424.0 49 185889.0 50 183354.0 51 168400.0 52 153446.0 53 136114.0 54 118782.0 55 105521.0 56 92260.0 57 83690.5 58 75121.0 59 71052.5 60 66984.0 61 58761.0 62 50538.0 63 44072.0 64 37606.0 65 30291.5 66 22977.0 67 19602.5 68 16228.0 69 13710.0 70 11192.0 71 9225.0 72 7258.0 73 6035.5 74 4813.0 75 4005.0 76 3197.0 77 2586.5 78 1976.0 79 1529.5 80 1083.0 81 822.0 82 561.0 83 369.0 84 177.0 85 141.5 86 106.0 87 82.0 88 58.0 89 34.5 90 11.0 91 13.0 92 15.0 93 13.0 94 11.0 95 5.5 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 2115417.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 24.568806698126462 #Duplication Level Percentage of deduplicated Percentage of total 1 79.21876472441232 19.46310517378446 2 6.570698928750621 3.2286846370412126 3 2.319767363677249 1.7098174782842628 4 1.379770014564036 1.3559721110277974 5 0.8903286390220785 1.093715611496973 6 0.6968806412500833 1.0272915459923826 7 0.566257490850928 0.9738589583857794 8 0.447090566865101 0.8787585371091561 9 0.3963791042332315 0.8764705431974505 >10 5.612041726040724 34.477858150176885 >50 1.770244564865649 29.14097259443179 >100 0.1282931753740618 4.226495511512564 >500 0.0021285367240790726 0.37015781692982863 >1k 0.0011610200313158577 0.4203140584994368 >5k 0.0 0.0 >10k+ 1.9350333855264296E-4 0.7565272721300236 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 15913 0.7522393929896564 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATA 2381 0.11255464052713957 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.05833365241935751 0.0 2 0.0 0.0 0.0 0.19584791083743772 0.0 3 0.0 0.0 0.0 0.35137280262000353 0.0 4 0.0 0.0 0.0 0.5338427364439257 0.0 5 0.0 0.0 0.0 0.8241873824404361 0.0 6 0.0 0.0 0.0 1.4906753609335655 0.0 7 0.0 0.0 0.0 1.881945734576209 0.0 8 0.0 0.0 0.0 3.030560877595292 0.0 9 0.0 0.0 0.0 3.743517235608866 0.0 10 0.0 0.0 0.0 4.710276980850584 0.0 11 0.0 0.0 0.0 5.2064912024437735 0.0 12 0.0 0.0 0.0 5.702752696040545 0.0 13 4.727200358132699E-5 0.0 0.0 5.974141268600943 0.0 14 4.727200358132699E-5 0.0 0.0 6.095488501794209 0.0 15 4.727200358132699E-5 0.0 0.0 6.202985037938147 0.0 16 4.727200358132699E-5 0.0 0.0 6.389520364070063 0.0 17 4.727200358132699E-5 0.0 0.0 6.578324746373883 0.0 18 4.727200358132699E-5 0.0 0.0 6.905494283160247 0.0 19 4.727200358132699E-5 0.0 0.0 7.051422958215803 0.0 20 4.727200358132699E-5 0.0 0.0 7.233798348032563 0.0 21 4.727200358132699E-5 0.0 0.0 7.399770352606602 0.0 22 4.727200358132699E-5 0.0 0.0 7.569004125427752 0.0 23 4.727200358132699E-5 0.0 0.0 7.757855779735154 0.0 24 4.727200358132699E-5 0.0 0.0 7.907093495041403 0.0 25 4.727200358132699E-5 0.0 0.0 8.035011536732474 0.0 26 4.727200358132699E-5 0.0 0.0 8.151631569567607 0.0 27 4.727200358132699E-5 0.0 0.0 8.302854709024272 0.0 28 4.727200358132699E-5 0.0 0.0 8.427369166457488 0.0 29 4.727200358132699E-5 0.0 0.0 8.571265145359048 0.0 30 4.727200358132699E-5 0.0 0.0 8.793018114159052 0.0 31 4.727200358132699E-5 0.0 0.0 8.946179405762551 0.0 32 4.727200358132699E-5 0.0 0.0 9.110591434218406 0.0 33 9.454400716265398E-5 0.0 0.0 9.252596532976714 0.0 34 9.454400716265398E-5 0.0 0.0 9.395168895777996 0.0 35 9.454400716265398E-5 0.0 0.0 9.549133811442378 0.0 36 9.454400716265398E-5 0.0 0.0 9.697567902687744 0.0 37 9.454400716265398E-5 0.0 0.0 9.85063465028408 0.0 38 9.454400716265398E-5 0.0 0.0 9.998170573461403 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGTTTTT 11185 0.0 42.583817 1 TATAGCG 120 0.0 42.166664 1 TTAGCGG 465 0.0 39.268814 2 CGAATAT 180 0.0 37.88889 14 CGACGGT 70 0.0 37.714283 28 CGTTCGA 65 1.0913936E-11 37.230766 14 TAGGGCG 980 0.0 36.816326 5 GGGCGAT 4595 0.0 36.291622 7 TACACGC 590 0.0 36.16949 35 TACGGGA 785 0.0 36.152866 4 AGGGCGA 2450 0.0 36.09796 6 TAGGGAT 2475 0.0 36.08889 5 TATCGTG 55 3.426976E-9 36.0 1 GTTTTTT 13805 0.0 35.90438 2 GACCGAT 1210 0.0 35.636364 9 ACACGCG 595 0.0 35.4958 36 ACGTAGG 360 0.0 35.444447 2 TAGCGCG 75 1.8189894E-12 35.2 1 AAGCGAC 50 5.9497324E-8 35.2 15 TAACGCG 25 0.0023531907 35.2 1 >>END_MODULE