##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546530_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1625917 Sequences flagged as poor quality 0 Sequence length 50 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.450364932527307 31.0 31.0 33.0 30.0 34.0 2 31.83702858140975 31.0 31.0 34.0 30.0 34.0 3 31.967017996613603 33.0 31.0 34.0 30.0 34.0 4 35.641771381934014 37.0 35.0 37.0 33.0 37.0 5 35.53376156347464 37.0 35.0 37.0 33.0 37.0 6 35.56167258230278 37.0 35.0 37.0 33.0 37.0 7 36.02410701161252 37.0 35.0 37.0 35.0 37.0 8 36.01356280794161 37.0 35.0 37.0 35.0 37.0 9 37.7106076140418 39.0 37.0 39.0 35.0 39.0 10 37.08903160493432 39.0 37.0 39.0 33.0 39.0 11 36.882224000364104 39.0 37.0 39.0 32.0 39.0 12 36.48800400020419 39.0 35.0 39.0 32.0 39.0 13 36.34611422354278 39.0 35.0 39.0 32.0 39.0 14 37.42171525360766 40.0 35.0 41.0 32.0 41.0 15 37.5617014890674 40.0 35.0 41.0 32.0 41.0 16 37.62324337589188 40.0 35.0 41.0 33.0 41.0 17 37.56185094319083 39.0 35.0 41.0 33.0 41.0 18 37.49285480132135 39.0 36.0 41.0 32.0 41.0 19 37.474050028383985 39.0 36.0 41.0 32.0 41.0 20 37.323860935090785 39.0 35.0 41.0 32.0 41.0 21 37.22152975828409 39.0 35.0 41.0 32.0 41.0 22 37.14418694189187 39.0 35.0 41.0 32.0 41.0 23 37.043392743910054 39.0 35.0 41.0 32.0 41.0 24 37.00821813167585 39.0 35.0 41.0 32.0 41.0 25 36.846511230278054 38.0 35.0 41.0 31.0 41.0 26 36.73843252761365 38.0 35.0 41.0 31.0 41.0 27 36.647163416090734 38.0 35.0 41.0 31.0 41.0 28 36.71310036121155 38.0 35.0 41.0 31.0 41.0 29 36.63721887402617 38.0 35.0 41.0 31.0 41.0 30 36.60874140561911 38.0 35.0 40.0 31.0 41.0 31 36.49083440298613 38.0 35.0 40.0 31.0 41.0 32 36.30250375634181 38.0 35.0 41.0 30.0 41.0 33 36.235893345109254 38.0 35.0 41.0 30.0 41.0 34 36.13918853176392 38.0 35.0 41.0 30.0 41.0 35 35.95839517023317 38.0 35.0 41.0 29.0 41.0 36 35.83185673069413 38.0 35.0 41.0 29.0 41.0 37 35.78549704566715 38.0 35.0 41.0 29.0 41.0 38 35.74542919472519 38.0 35.0 40.0 29.0 41.0 39 35.64416941332183 38.0 35.0 40.0 28.0 41.0 40 35.54414278219614 38.0 35.0 40.0 27.0 41.0 41 35.5375059120484 38.0 35.0 40.0 28.0 41.0 42 35.34815307300434 38.0 34.0 40.0 27.0 41.0 43 35.37239662295185 38.0 35.0 40.0 27.0 41.0 44 35.11753798010599 38.0 34.0 40.0 26.0 41.0 45 35.038188296204545 38.0 34.0 40.0 26.0 41.0 46 35.027865506049814 37.0 34.0 40.0 26.0 41.0 47 34.938321574840536 37.0 34.0 40.0 26.0 41.0 48 34.89567610154762 37.0 34.0 40.0 26.0 41.0 49 34.899346645615985 37.0 34.0 40.0 26.0 41.0 50 34.3765512015681 36.0 34.0 40.0 24.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 1.0 10 1.0 11 3.0 12 3.0 13 4.0 14 10.0 15 40.0 16 107.0 17 248.0 18 607.0 19 1147.0 20 2078.0 21 3272.0 22 5021.0 23 7449.0 24 10783.0 25 15349.0 26 20793.0 27 25457.0 28 28592.0 29 31688.0 30 37497.0 31 45587.0 32 56734.0 33 72921.0 34 117883.0 35 180310.0 36 123037.0 37 156485.0 38 234398.0 39 448412.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 33.3023149398155 24.49079504058325 27.673552832032634 14.533337187568614 2 31.69602138362536 26.32348391707572 28.16662843183262 13.813866267466299 3 29.41743028703187 25.493429246388345 30.842226263702265 14.246914202877514 4 25.484142179459347 29.005047613131545 30.005283172511266 15.505527034897845 5 23.377023550402633 32.37274719435248 29.258197066639934 14.992032188604954 6 20.49249746450772 41.17774769560808 27.352257218541904 10.977497621342295 7 85.60154054604263 4.427101752426477 7.616501949361498 2.3548557521693914 8 85.08896825606719 3.8941717197126295 7.413908582049392 3.6029514421707876 9 78.91638995102456 6.07773951560873 10.526121567091062 4.479748966275646 10 39.60466616684615 29.236055715021124 16.24123494618729 14.918043171945431 11 32.34623907616441 25.281179789620257 26.492065708151152 15.880515426064184 12 29.699855527680686 22.85479517097121 28.750053046988256 18.695296254359846 13 22.711860445520895 29.62402139838626 30.24773097273723 17.41638718335561 14 18.912712026505655 33.43774620721722 29.797954016102913 17.851587750174208 15 17.398612598306062 25.22631844060921 40.03193274933468 17.343136211750046 16 18.86972090211247 23.022884932010673 38.15287004195171 19.954524123925143 17 19.569633628284837 23.372164753797396 30.71128477037881 26.34691684753896 18 21.78665946662714 24.288570695798125 33.15981074064666 20.76495909692807 19 26.208656407430393 26.44323172708078 27.401706237157246 19.946405628331583 20 26.197278212848502 26.100471303270705 26.803459217167912 20.898791266712877 21 23.305187165150496 28.452313371469764 28.56910900125898 19.67339046212076 22 22.38386092279003 25.64355991111477 27.626440956088167 24.34613821000703 23 19.98976577525175 29.57426486099844 26.884705676858044 23.551263686891765 24 20.37963807500629 25.411198726626267 33.27180907758514 20.937354120782302 25 20.41703235774028 26.488313979126854 30.94801272143658 22.146640941696287 26 18.785706773469986 29.28236804215713 29.411033896564216 22.520891287808663 27 19.857778718101844 28.5836853910747 29.083833922641805 22.47470196818165 28 19.561269117673287 27.22383737915281 33.32365674262585 19.891236760548047 29 20.099180954501367 25.81946064897532 32.39162884698296 21.689729549540353 30 21.184168687577536 26.553015928857377 30.99020429702131 21.272611086543776 31 24.778878626645763 25.82524200189801 27.03895709313575 22.35692227832048 32 26.029372963072532 25.549090144207852 28.21066512005225 20.210871772667364 33 24.04858304575203 25.45498939982791 28.744456205329055 21.751971349091008 34 21.423602803833163 25.640054197108462 30.217040599243383 22.719302399814996 35 20.938645699626733 24.76055050780575 31.46304516159189 22.837758630975628 36 24.819594112122576 24.771190657333676 28.42691232086263 21.98230290968112 37 21.24388883319382 27.367879172184068 29.6290032025005 21.759228792121615 38 21.24690251716416 27.67527493715854 26.660339980454108 24.417482565223196 39 20.706530530156215 26.44452330592521 28.587560127607993 24.261386036310586 40 22.257470707299326 24.36563490018248 28.90768716976328 24.469207222754914 41 19.11536689757226 24.30560723579371 29.73528169027078 26.843744176363245 42 22.203593418360224 26.13891114983114 27.68105629008123 23.976439141727408 43 22.177761841471614 24.924888539820913 29.26939074995833 23.627958868749143 44 22.181390562986916 27.361359774207415 28.874106119808086 21.583143542997583 45 20.064062310683756 27.98912859635517 28.619972606227744 23.32683648673333 46 22.26097642130564 27.65836140467195 28.114903774300902 21.965758399721512 47 21.674415114670676 25.874198990477375 29.270190298766792 23.181195596085164 48 21.92559644803517 24.28955475587007 29.71941372161064 24.06543507448412 49 21.961822159433723 23.06187831236158 30.515456816061338 24.460842712143364 50 20.42644243217827 26.4186302252821 29.877539874421633 23.27738746811799 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 1869.0 1 2048.0 2 2227.0 3 9571.5 4 16916.0 5 11922.5 6 6929.0 7 7296.5 8 7664.0 9 8023.0 10 8382.0 11 8352.5 12 8323.0 13 8258.5 14 8194.0 15 7993.5 16 7793.0 17 7745.0 18 7697.0 19 7333.5 20 6970.0 21 7424.5 22 7879.0 23 8686.5 24 9494.0 25 10756.0 26 12018.0 27 14196.5 28 16375.0 29 18028.5 30 19682.0 31 23247.5 32 26813.0 33 31576.0 34 36339.0 35 42305.5 36 48272.0 37 52098.5 38 55925.0 39 64586.0 40 73247.0 41 87055.0 42 100863.0 43 111111.0 44 121359.0 45 135181.5 46 149004.0 47 152939.5 48 156875.0 49 154619.5 50 152364.0 51 135950.0 52 119536.0 53 106040.0 54 92544.0 55 83012.5 56 73481.0 57 68950.5 58 64420.0 59 59801.0 60 55182.0 61 50870.0 62 46558.0 63 40850.0 64 35142.0 65 29314.5 66 23487.0 67 19324.0 68 15161.0 69 13295.5 70 11430.0 71 9388.5 72 7347.0 73 6581.0 74 5815.0 75 4459.5 76 3104.0 77 2229.5 78 1355.0 79 1219.5 80 1084.0 81 740.0 82 396.0 83 319.5 84 243.0 85 169.5 86 96.0 87 72.0 88 48.0 89 30.0 90 12.0 91 7.0 92 2.0 93 1.5 94 1.0 95 0.5 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 1625917.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 25.583810115585454 #Duplication Level Percentage of deduplicated Percentage of total 1 78.64850690248201 20.121284664674118 2 6.763289508762655 3.4606142909782998 3 2.4062009918823484 1.8467936782875414 4 1.3866629562800972 1.4190448707114554 5 0.9111228613838557 1.1654997138806724 6 0.7086689333340812 1.0878270855140173 7 0.5834077854038838 1.0448055801209035 8 0.4899987675478591 1.002882834065226 9 0.43612345688623033 1.0041929737137032 >10 6.103949553761135 39.09294307248849 >50 1.4878286859240866 24.56232315027819 >100 0.07062403168703177 2.7310910177594163 >500 0.002169338798807393 0.3408313713102998 >1k 0.0012051882215596628 0.48371291415921686 >5k 0.0 0.0 >10k+ 2.4103764431193255E-4 0.6361527820584499 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 10316 0.6344727313878875 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATA 2501 0.1538208899962298 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.09397773687094729 0.0 2 0.0 0.0 0.0 0.3182819295203876 0.0 3 0.0 0.0 0.0 0.4967043213152947 0.0 4 0.0 0.0 0.0 0.74807016594328 0.0 5 0.0 0.0 0.0 1.2148221588186852 0.0 6 0.0 0.0 0.0 2.0958019382293194 0.0 7 0.0 0.0 0.0 2.603945957880999 0.0 8 0.0 0.0 0.0 4.132744783405303 0.0 9 0.0 0.0 0.0 5.044107417537304 0.0 10 0.0 0.0 0.0 6.302904760821124 0.0 11 0.0 0.0 0.0 7.013703651539408 0.0 12 6.150375449669326E-5 0.0 0.0 7.675115027396847 0.0 13 6.150375449669326E-5 0.0 0.0 8.02734702939941 0.0 14 6.150375449669326E-5 0.0 0.0 8.180245363078189 0.0 15 6.150375449669326E-5 0.0 0.0 8.32717783257079 0.0 16 6.150375449669326E-5 0.0 0.0 8.611509689609003 0.0 17 6.150375449669326E-5 0.0 0.0 8.902545455887354 0.0 18 6.150375449669326E-5 0.0 0.0 9.39143880038157 0.0 19 6.150375449669326E-5 0.0 0.0 9.581054875494875 0.0 20 6.150375449669326E-5 0.0 0.0 9.822088089367416 0.0 21 6.150375449669326E-5 0.0 0.0 10.044055139345982 0.0 22 6.150375449669326E-5 0.0 0.0 10.279799030331807 0.0 23 6.150375449669326E-5 0.0 0.0 10.53325600261268 0.0 24 6.150375449669326E-5 0.0 0.0 10.731236588337534 0.0 25 6.150375449669326E-5 0.0 0.0 10.899449356885992 0.0 26 6.150375449669326E-5 0.0 0.0 11.064340922691626 0.0 27 6.150375449669326E-5 0.0 0.0 11.25229639643352 0.0 28 6.150375449669326E-5 0.0 0.0 11.42733608173111 0.0 29 6.150375449669326E-5 0.0 0.0 11.608772157496354 0.0 30 6.150375449669326E-5 0.0 0.0 11.850727927686346 0.0 31 6.150375449669326E-5 0.0 0.0 12.040097987781664 0.0 32 6.150375449669326E-5 0.0 0.0 12.230021581667453 0.0 33 6.150375449669326E-5 0.0 0.0 12.412995251295115 0.0 34 6.150375449669326E-5 0.0 0.0 12.603164860198891 0.0 35 6.150375449669326E-5 0.0 0.0 12.804897174948044 0.0 36 6.150375449669326E-5 0.0 0.0 12.983996108042415 0.0 37 6.150375449669326E-5 0.0 0.0 13.178778498533443 0.0 38 6.150375449669326E-5 0.0 0.0 13.381986903390517 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGTTTTT 6435 0.0 41.94872 1 GCGTAAG 165 0.0 41.333332 1 TAATACG 55 7.8216544E-11 40.0 1 TATCGCG 55 7.8216544E-11 40.0 1 CGTAAGG 285 0.0 39.368423 2 TACGGGA 415 0.0 39.228912 4 TAACGGG 320 0.0 39.187504 3 CGGGTAT 90 0.0 39.111107 6 ATTGCGG 315 0.0 38.4127 2 TAAACGG 115 0.0 38.260868 2 TGCGTAG 150 0.0 38.13333 1 CATACGA 145 0.0 37.931034 18 TAGGGCG 570 0.0 37.824562 5 ACGGGAT 490 0.0 37.265305 5 ATTGGGC 440 0.0 37.0 4 ACGGGAC 435 0.0 36.91954 5 GTACGGG 590 0.0 36.915253 3 TCGTTGA 60 1.9826984E-10 36.666664 24 CGCATAA 30 1.301333E-4 36.666664 35 ATTCGCG 30 1.301333E-4 36.666664 1 >>END_MODULE