##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546529_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 2013695 Sequences flagged as poor quality 0 Sequence length 50 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.405086172434256 31.0 31.0 33.0 30.0 34.0 2 31.79677955201756 31.0 31.0 34.0 30.0 34.0 3 31.93455712011998 33.0 31.0 34.0 30.0 34.0 4 35.60558674476522 37.0 35.0 37.0 33.0 37.0 5 35.486206699624326 37.0 35.0 37.0 33.0 37.0 6 35.52023121674335 37.0 35.0 37.0 33.0 37.0 7 36.00693054310608 37.0 35.0 37.0 35.0 37.0 8 36.00194120758109 37.0 35.0 37.0 35.0 37.0 9 37.70032204479824 39.0 37.0 39.0 35.0 39.0 10 37.03321903267376 39.0 37.0 39.0 33.0 39.0 11 36.807765326923885 39.0 37.0 39.0 32.0 39.0 12 36.30327283923335 38.0 35.0 39.0 32.0 39.0 13 36.13558855735352 38.0 35.0 39.0 32.0 39.0 14 37.1613342636298 39.0 35.0 41.0 32.0 41.0 15 37.328519959576795 39.0 35.0 41.0 32.0 41.0 16 37.3769011692436 39.0 35.0 41.0 32.0 41.0 17 37.27980503502268 39.0 35.0 41.0 32.0 41.0 18 37.2447346792836 39.0 35.0 41.0 32.0 41.0 19 37.253419708545735 39.0 35.0 41.0 32.0 41.0 20 37.11754957925604 39.0 35.0 41.0 32.0 41.0 21 37.01207332788729 39.0 35.0 41.0 32.0 41.0 22 36.93040952080628 39.0 35.0 41.0 31.0 41.0 23 36.845492986773074 38.0 35.0 41.0 31.0 41.0 24 36.782833547284966 38.0 35.0 41.0 31.0 41.0 25 36.63287389599716 38.0 35.0 41.0 31.0 41.0 26 36.53532535960014 38.0 35.0 41.0 31.0 41.0 27 36.44470190371432 38.0 35.0 40.0 31.0 41.0 28 36.51683248952796 38.0 35.0 40.0 31.0 41.0 29 36.4758739531061 38.0 35.0 40.0 31.0 41.0 30 36.44300303670615 38.0 35.0 40.0 31.0 41.0 31 36.34472002959733 38.0 35.0 40.0 30.0 41.0 32 36.15400892389364 38.0 35.0 40.0 30.0 41.0 33 36.121073449554174 38.0 35.0 41.0 30.0 41.0 34 36.01900933358826 38.0 35.0 41.0 30.0 41.0 35 35.85551337218397 38.0 35.0 41.0 29.0 41.0 36 35.73374865607751 38.0 35.0 40.0 29.0 41.0 37 35.71486843836827 38.0 35.0 40.0 29.0 41.0 38 35.643233955489784 38.0 35.0 40.0 29.0 41.0 39 35.559016137001876 38.0 35.0 40.0 28.0 41.0 40 35.43644295685295 38.0 34.0 40.0 27.0 41.0 41 35.448591767869516 38.0 34.0 40.0 28.0 41.0 42 35.26890616503492 38.0 34.0 40.0 27.0 41.0 43 35.30519815562933 38.0 34.0 40.0 27.0 41.0 44 35.06255068419001 37.0 34.0 40.0 27.0 41.0 45 34.94636377405715 37.0 34.0 40.0 26.0 41.0 46 34.941507030607916 37.0 34.0 40.0 26.0 41.0 47 34.85192345414772 37.0 34.0 40.0 26.0 41.0 48 34.82418588713782 37.0 34.0 40.0 26.0 41.0 49 34.82584403298414 37.0 34.0 40.0 26.0 41.0 50 34.28967594397364 36.0 33.0 40.0 24.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 1.0 10 1.0 11 3.0 12 6.0 13 5.0 14 25.0 15 63.0 16 141.0 17 371.0 18 736.0 19 1531.0 20 2694.0 21 4348.0 22 6549.0 23 9763.0 24 13804.0 25 19375.0 26 26308.0 27 31944.0 28 36184.0 29 41218.0 30 49078.0 31 59512.0 32 73449.0 33 94163.0 34 155338.0 35 241018.0 36 147661.0 37 186821.0 38 281323.0 39 530262.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 33.935973421992905 23.837671544101763 28.6101420522969 13.616212981608436 2 32.56173352965568 25.592207360101703 27.898812878812336 13.947246231430283 3 29.65389495430043 25.54870524086319 30.712347202530673 14.085052602305712 4 25.824615942334862 28.961982822622094 29.781322394900915 15.432078840142127 5 23.733484961724592 32.21371657574757 28.755298096285685 15.297500366242156 6 20.74256528421633 41.21488110165641 26.750575434710814 11.291978179416445 7 87.093725713179 4.157580964346637 6.707023655518834 2.041669666955522 8 86.74690059815414 3.4849368946141297 6.571054702921743 3.197107804309987 9 80.88955874648346 5.45017989318144 9.538981821974032 4.1212795383610725 10 40.56373979177582 28.955427708764237 15.86565989387668 14.615172605583268 11 35.749356282853164 24.989136885178738 24.532463953081276 14.729042878886823 12 32.490769456149025 22.546115474289802 26.669778690417367 18.293336379143813 13 23.584803061039533 31.685036711120603 27.166080265382792 17.564079962457075 14 18.9408525124212 33.56486458972188 28.321717042551132 19.17256585530579 15 19.159157667869266 23.687499844812645 39.85573783517365 17.29760465214444 16 21.24224373601762 22.135328339197347 37.022538169881734 19.599889754903298 17 20.397180307842053 22.777729497267458 29.458780997122208 27.36630919776828 18 23.46204365606509 22.84347927565992 32.50090008665662 21.193576981618367 19 26.57085606310787 27.62593143450224 26.270413344622696 19.53279915776719 20 28.36030282639625 25.672457844906997 25.463488760711034 20.50375056798572 21 24.31798261405029 29.499253859199133 26.67082154944021 19.511941977310368 22 23.434184422169196 25.235698554150453 26.646835791914864 24.683281231765484 23 20.868254626445413 29.795376161732534 26.655526283771874 22.680842928050176 24 21.27690638353872 25.692570126061792 33.19186867921905 19.838654811180444 25 20.824156587765277 26.821291208450138 30.483762436714596 21.870789767069986 26 19.320453196735354 29.433951020387894 28.372072235368318 22.873523547508437 27 20.060386503417845 27.980950441849433 28.642967281539654 23.31569577319306 28 18.355212681165717 28.404152565309047 32.53571171403812 20.70492303948711 29 19.947509429183665 25.626472727995054 30.97931911237799 23.446698730443288 30 22.04966491946397 27.033438529668096 30.680167552683002 20.236728998184926 31 25.992565904965748 26.014614924305818 26.257203797000045 21.735615373728397 32 26.112494692592474 26.850590580996624 25.842841145257843 21.194073581153056 33 24.642212450246934 26.804158524503464 26.76870131772687 21.78492770752274 34 19.834880654716827 28.79716143705973 28.727438862389786 22.640519045833653 35 20.061131402719877 27.4902107816725 31.29182919955604 21.156828616051587 36 24.585798743106576 29.677533092151492 26.074256528421635 19.662411636320297 37 22.752998840440085 30.161717638470577 27.555960560064957 19.529322961024388 38 21.738197691308763 31.407089951556717 25.96818286781265 20.886529489321866 39 23.43696537956344 29.02589518273621 25.67444424304575 21.862695194654602 40 24.726783351004002 25.612418961163435 26.31570322218608 23.345094465646486 41 20.115211092047204 25.981591055249183 26.806889821944235 27.096308030759374 42 22.473661602179078 27.036318806969277 25.189415477517695 25.300604113333947 43 21.622092720099122 25.910478001882115 27.419643987793584 25.047785290225182 44 21.56255043589024 28.266296534480144 27.77267659700203 22.398476432627582 45 20.51482473760922 29.69953245153809 26.272797022389188 23.512845788463498 46 23.01013807950062 29.350522298560605 26.268774566158232 21.370565055780546 47 21.746292263724147 26.76750947884362 27.901146896625356 23.585051360806876 48 22.46775206771631 24.760502459409196 29.428041485925128 23.343703986949365 49 22.764917229272555 24.096151601905948 29.57299889010004 23.565932278721455 50 20.866367548213606 27.816029736380138 28.583424997330773 22.73417771807548 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 1578.0 1 1949.0 2 2320.0 3 9693.5 4 17067.0 5 12075.5 6 7084.0 7 7216.0 8 7348.0 9 7856.0 10 8364.0 11 8382.5 12 8401.0 13 8205.5 14 8010.0 15 7675.5 16 7341.0 17 7393.5 18 7446.0 19 7293.5 20 7141.0 21 7759.0 22 8377.0 23 9414.5 24 10452.0 25 11743.5 26 13035.0 27 15909.5 28 18784.0 29 21877.0 30 24970.0 31 29331.0 32 33692.0 33 38224.0 34 42756.0 35 50856.0 36 58956.0 37 62991.5 38 67027.0 39 78089.0 40 89151.0 41 110543.5 42 131936.0 43 144196.0 44 156456.0 45 169013.5 46 181571.0 47 186173.5 48 190776.0 49 188747.0 50 186718.0 51 172555.5 52 158393.0 53 141153.5 54 123914.0 55 109586.0 56 95258.0 57 88388.0 58 81518.0 59 75070.5 60 68623.0 61 64073.5 62 59524.0 63 52013.5 64 44503.0 65 36370.0 66 28237.0 67 24335.5 68 20434.0 69 16257.0 70 12080.0 71 10736.5 72 9393.0 73 7681.5 74 5970.0 75 5027.0 76 4084.0 77 3481.0 78 2878.0 79 2156.5 80 1435.0 81 964.5 82 494.0 83 299.0 84 104.0 85 73.0 86 42.0 87 33.0 88 24.0 89 17.5 90 11.0 91 11.0 92 11.0 93 7.5 94 4.0 95 4.0 96 4.0 97 2.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 2013695.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 22.400704550444512 #Duplication Level Percentage of deduplicated Percentage of total 1 78.56867962902034 17.59993779288213 2 7.0506485966731365 3.158789922061623 3 2.4515147973463676 1.6474697602919652 4 1.2782925614288096 1.1453861599039086 5 0.947244839449456 1.0609475892720257 6 0.6492391315949936 0.872604838166797 7 0.5369957666064621 0.8420358458813572 8 0.478458615399475 0.857424806654272 9 0.3901978102370365 0.7866635277015241 >10 5.287154363647165 28.794687608692954 >50 2.0135690916681366 32.01758425589154 >100 0.343551761510015 9.819602932917672 >500 0.003117124793061206 0.4925212081573336 >1k 0.0011132588546647164 0.45072548436636184 >5k 2.2265177093294328E-4 0.4536182671585771 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 9095 0.4516572767971317 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATA 3303 0.16402682630686374 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.04896471412006287 0.0 2 0.0 0.0 0.0 0.19198538010969884 0.0 3 0.0 0.0 0.0 0.3272590933582295 0.0 4 0.0 0.0 0.0 0.549636364990726 0.0 5 0.0 0.0 0.0 0.9238737743302734 0.0 6 0.0 0.0 0.0 1.7042302831362246 0.0 7 0.0 0.0 0.0 2.1790787582032034 0.0 8 0.0 0.0 0.0 3.573530251602154 0.0 9 0.0 0.0 0.0 4.401758955551859 0.0 10 0.0 0.0 0.0 5.535942632821753 0.0 11 0.0 0.0 0.0 6.1124450326390045 0.0 12 0.0 0.0 0.0 6.655923563399621 0.0 13 0.0 0.0 0.0 6.927116569291774 0.0 14 4.96599534686236E-5 0.0 0.0 7.048833115243371 0.0 15 4.96599534686236E-5 0.0 0.0 7.1592271918041215 0.0 16 4.96599534686236E-5 0.0 0.0 7.377433027345253 0.0 17 4.96599534686236E-5 0.0 0.0 7.598469480234097 0.0 18 4.96599534686236E-5 0.0 0.0 7.960142921346082 0.0 19 4.96599534686236E-5 0.0 0.0 8.103958146591216 0.0 20 4.96599534686236E-5 0.0 0.0 8.288593853587559 0.0 21 4.96599534686236E-5 0.0 0.0 8.470647243003533 0.0 22 4.96599534686236E-5 0.0 0.0 8.647486337305303 0.0 23 4.96599534686236E-5 0.0 0.0 8.85427038354865 0.0 24 4.96599534686236E-5 0.0 0.0 9.01814822999511 0.0 25 4.96599534686236E-5 0.0 0.0 9.151137585384083 0.0 26 4.96599534686236E-5 0.0 0.0 9.28507047988896 0.0 27 4.96599534686236E-5 0.0 0.0 9.428637405366752 0.0 28 4.96599534686236E-5 0.0 0.0 9.56718867554421 0.0 29 4.96599534686236E-5 0.0 0.0 9.727093725713178 0.0 30 4.96599534686236E-5 0.0 0.0 9.947534259160399 0.0 31 4.96599534686236E-5 0.0 0.0 10.104062432493501 0.0 32 4.96599534686236E-5 0.0 0.0 10.271962735170916 0.0 33 4.96599534686236E-5 0.0 0.0 10.436088881384718 0.0 34 4.96599534686236E-5 0.0 0.0 10.594454472996159 0.0 35 4.96599534686236E-5 0.0 0.0 10.789022170686225 0.0 36 4.96599534686236E-5 0.0 0.0 10.94078298848634 0.0 37 4.96599534686236E-5 0.0 0.0 11.106150633536856 0.0 38 4.96599534686236E-5 0.0 0.0 11.294461177089877 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CACTACG 25 4.4440374E-5 44.0 1 CCGAATT 25 4.4440374E-5 44.0 30 TCCGTCG 35 1.446806E-7 43.999996 16 CGTTTTT 6420 0.0 41.66978 1 CACGACG 160 0.0 39.875 26 CGGTCTA 175 0.0 38.971428 31 TCGATAG 80 0.0 38.5 1 TCGAAAT 40 4.1265957E-7 38.5 10 GACCGAT 1155 0.0 38.47619 9 TAGCACG 150 0.0 38.13333 1 AGGGCGA 2615 0.0 37.690247 6 AACGCCG 100 0.0 37.399998 13 AGGGCGC 365 0.0 37.369865 6 GGGCGAT 4790 0.0 37.110645 7 ACGGGTC 155 0.0 36.903225 5 GCGCGAC 585 0.0 36.854702 9 CGTAATC 30 1.3014427E-4 36.666668 34 TTACGAG 60 1.9826984E-10 36.666668 1 ACGGGAT 530 0.0 36.5283 5 CGAATAT 230 0.0 36.347828 14 >>END_MODULE