##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546527_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1339296 Sequences flagged as poor quality 0 Sequence length 50 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.410662019449024 31.0 31.0 33.0 30.0 34.0 2 31.798929437555252 31.0 31.0 34.0 30.0 34.0 3 31.942115857883543 33.0 31.0 34.0 30.0 34.0 4 35.62138765440948 37.0 35.0 37.0 33.0 37.0 5 35.50433212672927 37.0 35.0 37.0 33.0 37.0 6 35.543708784316536 37.0 35.0 37.0 33.0 37.0 7 36.0101471220701 37.0 35.0 37.0 35.0 37.0 8 35.99521689006762 37.0 35.0 37.0 35.0 37.0 9 37.68849007239624 39.0 37.0 39.0 35.0 39.0 10 37.054029131722935 39.0 37.0 39.0 33.0 39.0 11 36.8104063627458 39.0 37.0 39.0 32.0 39.0 12 36.366800916302296 38.0 35.0 39.0 32.0 39.0 13 36.17889547941605 39.0 35.0 39.0 32.0 39.0 14 37.22906213413614 39.0 35.0 41.0 32.0 41.0 15 37.40789788067761 39.0 35.0 41.0 32.0 41.0 16 37.48432236040427 39.0 35.0 41.0 32.0 41.0 17 37.42946219506368 39.0 35.0 41.0 32.0 41.0 18 37.36595270948319 39.0 35.0 41.0 32.0 41.0 19 37.353297553341456 39.0 35.0 41.0 32.0 41.0 20 37.21049939669797 39.0 35.0 41.0 32.0 41.0 21 37.09128228561871 39.0 35.0 41.0 32.0 41.0 22 37.02303672974458 39.0 35.0 41.0 32.0 41.0 23 36.93220318734619 39.0 35.0 41.0 32.0 41.0 24 36.881340644637184 38.0 35.0 41.0 32.0 41.0 25 36.70313731990538 38.0 35.0 41.0 31.0 41.0 26 36.58889819726185 38.0 35.0 41.0 31.0 41.0 27 36.48608672018732 38.0 35.0 40.0 31.0 41.0 28 36.55598239672186 38.0 35.0 40.0 31.0 41.0 29 36.504208181014505 38.0 35.0 40.0 31.0 41.0 30 36.48491520918453 38.0 35.0 40.0 31.0 41.0 31 36.38546071966167 38.0 35.0 40.0 30.0 41.0 32 36.19379285833752 38.0 35.0 40.0 30.0 41.0 33 36.14299527512962 38.0 35.0 41.0 30.0 41.0 34 36.069055682985685 38.0 35.0 41.0 30.0 41.0 35 35.905373420065466 38.0 35.0 41.0 29.0 41.0 36 35.7457134195876 38.0 35.0 40.0 29.0 41.0 37 35.71558490430793 38.0 35.0 40.0 29.0 41.0 38 35.65141761044608 38.0 35.0 40.0 29.0 41.0 39 35.5608916923518 38.0 35.0 40.0 28.0 41.0 40 35.45984233507753 38.0 35.0 40.0 27.0 41.0 41 35.46611055360428 38.0 35.0 40.0 27.0 41.0 42 35.29339966669056 38.0 34.0 40.0 27.0 41.0 43 35.31545080400449 38.0 34.0 40.0 27.0 41.0 44 34.97267967648675 38.0 34.0 40.0 26.0 41.0 45 34.938949268869614 37.0 34.0 40.0 26.0 41.0 46 34.96066366210307 37.0 34.0 40.0 26.0 41.0 47 34.89615813083889 37.0 34.0 40.0 26.0 41.0 48 34.867623736649705 37.0 34.0 40.0 26.0 41.0 49 34.86084554870619 37.0 34.0 40.0 26.0 41.0 50 34.315167072850215 36.0 33.0 40.0 24.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 1.0 10 2.0 11 3.0 12 4.0 13 9.0 14 13.0 15 39.0 16 107.0 17 220.0 18 485.0 19 998.0 20 1715.0 21 2980.0 22 4240.0 23 6384.0 24 8988.0 25 12917.0 26 17739.0 27 21736.0 28 24348.0 29 27434.0 30 31764.0 31 38847.0 32 47756.0 33 61458.0 34 99683.0 35 156117.0 36 98751.0 37 125002.0 38 189873.0 39 359683.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 34.83785511193941 23.77331075430674 27.514604687835998 13.874229445917855 2 32.06669772776145 24.898603445392204 29.014198504288817 14.020500322557522 3 29.62100984397773 25.154260148615393 30.92146918978329 14.303260817623586 4 25.603451365493513 28.274705516928293 30.972615463646573 15.149227653931618 5 22.842373903901752 32.796260124722245 29.307113588034312 15.054252383341696 6 20.555799464793445 41.165059852340335 27.368408477289563 10.910732205576661 7 86.30743315891334 4.3812570186127635 7.147038444078083 2.164271378395814 8 86.16108761618044 3.7778056531192505 6.923712159223951 3.1373945714763574 9 80.38372398633312 5.812456693665926 9.901321291185818 3.9024980288151387 10 41.64740281461305 27.43874393711323 16.35934102692758 14.554512221346142 11 33.86801722696103 25.409020858719806 25.575526246625092 15.147435667694072 12 31.862560628867705 22.330164504336604 27.879945882015626 17.927328984780065 13 22.871941676821255 31.659991517931807 28.82379996654959 16.644266838697344 14 18.775759802164718 34.2771874178673 29.440840561011157 17.506212218956826 15 17.439983394260867 25.083028695672947 40.867963467373905 16.60902444269228 16 19.28505722409385 22.497939215826822 39.26368778821112 18.953315771868205 17 19.876114018111007 22.70715360906028 30.30151661768571 27.115215755143 18 22.837819272214656 23.68199412228514 32.93222708049603 20.54795952500418 19 26.213025350631973 26.27372888442883 27.166959357752134 20.34628640718706 20 27.511319379733827 24.703276945499724 26.84059386423912 20.94480981052732 21 23.54535517167228 28.434864286908944 28.206983370367716 19.81279717105106 22 22.890010871383172 25.190099873366307 27.78541860798509 24.13447064726543 23 20.867530404033165 29.483325568059637 27.123951688051033 22.52519233985616 24 20.868949059804553 25.711642534585334 33.30555754665138 20.113850858958738 25 20.07375516689365 26.639294076888152 32.22618450290302 21.060766253315176 26 19.2681080209304 29.94856999498244 28.861133013165123 21.922188970922036 27 20.046278044584618 29.37625439036628 29.2854604209973 21.2920071440518 28 19.15043425799823 27.858442047165077 33.497897402814615 19.49322629202208 29 19.54063926122381 26.18129226100877 32.895566028719564 21.38250244904786 30 20.785397701478985 27.54596444699305 30.243501063245166 21.4251367882828 31 25.141268248393185 26.71119752466968 25.90891035290182 22.238623874035316 32 25.25371538479918 27.399544238166918 26.741661290707953 20.60507908632595 33 23.829982319069124 27.687232695386232 25.90943301555444 22.573351969990206 34 20.041275416338138 28.351088930303682 28.868300958115306 22.739334695242874 35 21.06524621890904 27.18622320980575 28.663641196568946 23.08488937471627 36 24.819009390007885 26.687528373115427 26.75838649559171 21.735075741284973 37 22.265354335412038 28.957601605619672 27.353549924736576 21.423494134231717 38 21.758968891118915 30.45973406924235 25.27268057247987 22.508616467158866 39 21.02903316369197 29.011062528373117 28.018750149332188 21.94115415860273 40 23.242285499247366 26.13962858098583 27.42985867201873 23.18822724774807 41 19.50741284973598 25.404914223592094 29.03510501039352 26.052567916278402 42 22.77741440279072 27.074522734332067 26.356682914008555 23.79137994886866 43 22.169109741237186 27.30367297445822 27.403426875014937 23.123790409289658 44 21.411024896662127 29.2998709769909 27.924820204047503 21.364283922299478 45 20.082267101521996 30.084387618569757 26.432021002078702 23.401324277829545 46 22.153504527751895 28.82469595966836 27.65094497407593 21.37085453850381 47 22.286858170262587 26.95147301268726 28.021886125247892 22.73978269180226 48 22.89740281461305 24.9031580770793 29.04645425656464 23.152984851743007 49 21.59828745848565 24.891958163094642 29.75548347788689 23.754270900532816 50 20.218383389482238 28.49937579146059 28.533348863880725 22.74889195517645 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 1482.0 1 1662.5 2 1843.0 3 7201.0 4 12559.0 5 8898.5 6 5238.0 7 5448.5 8 5659.0 9 5956.0 10 6253.0 11 6227.0 12 6201.0 13 6204.0 14 6207.0 15 5897.5 16 5588.0 17 5382.5 18 5177.0 19 5325.5 20 5474.0 21 5961.5 22 6449.0 23 6390.5 24 6332.0 25 7710.5 26 9089.0 27 11193.5 28 13298.0 29 14838.0 30 16378.0 31 19753.0 32 23128.0 33 26547.5 34 29967.0 35 34346.5 36 38726.0 37 43662.5 38 48599.0 39 55832.5 40 63066.0 41 75882.0 42 88698.0 43 100066.5 44 111435.0 45 117266.5 46 123098.0 47 124339.0 48 125580.0 49 123214.5 50 120849.0 51 111715.5 52 102582.0 53 90872.5 54 79163.0 55 72235.0 56 65307.0 57 59781.0 58 54255.0 59 48343.5 60 42432.0 61 38289.5 62 34147.0 63 30709.5 64 27272.0 65 22117.5 66 16963.0 67 13964.5 68 10966.0 69 9424.5 70 7883.0 71 6380.5 72 4878.0 73 3895.0 74 2912.0 75 2302.0 76 1692.0 77 1601.0 78 1510.0 79 1049.5 80 589.0 81 403.0 82 217.0 83 145.0 84 73.0 85 58.5 86 44.0 87 30.5 88 17.0 89 12.5 90 8.0 91 9.5 92 11.0 93 6.0 94 1.0 95 0.5 96 0.0 97 0.5 98 1.0 99 0.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 1339296.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 24.82563942829376 #Duplication Level Percentage of deduplicated Percentage of total 1 78.68791010655193 19.534776836712506 2 6.257447946775578 3.1069029293593524 3 2.245591455053264 1.6724473129922959 4 1.393689533923645 1.3839693537670075 5 0.9373589167226628 1.1635267240726432 6 0.7337897355216968 1.093007963414681 7 0.5837126878466222 1.0143728502740301 8 0.48767127525518283 0.9685400991217091 9 0.43843791414512445 0.9796051411434068 >10 6.639227392657678 41.4825046931646 >50 1.5350083001078592 24.556477908678577 >100 0.05803873971992252 2.054185150556012 >500 0.0012091404107850367 0.17732946738125954 >1k 6.045702053925183E-4 0.24929686442680668 >5k 3.0228510269625917E-4 0.5630567049350784 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 7503 0.560219697512723 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATA 2163 0.16150275965880584 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.04517298640479774 0.0 2 0.0 0.0 0.0 0.18121460827180846 0.0 3 0.0 0.0 0.0 0.2994856999498244 0.0 4 0.0 0.0 0.0 0.4824922944591786 0.0 5 0.0 0.0 0.0 0.8150550737103672 0.0 6 0.0 0.0 0.0 1.495337849138652 0.0 7 0.0 0.0 0.0 1.8836015339402192 0.0 8 0.0 0.0 0.0 3.0919975867918668 0.0 9 0.0 0.0 0.0 3.766381740854897 0.0 10 0.0 0.0 0.0 4.6913453038014 0.0 11 0.0 0.0 0.0 5.17256827467565 0.0 12 0.0 0.0 0.0 5.637588703318759 0.0 13 0.0 0.0 0.0 5.877042864310802 0.0 14 0.0 0.0 0.0 5.982546054046305 0.0 15 0.0 0.0 0.0 6.081105297111318 0.0 16 0.0 0.0 0.0 6.2819570879028985 0.0 17 0.0 0.0 0.0 6.493560796119753 0.0 18 0.0 0.0 0.0 6.856139344849831 0.0 19 0.0 0.0 0.0 6.984863689580197 0.0 20 0.0 0.0 0.0 7.1545797194944205 0.0 21 0.0 0.0 0.0 7.324594413781568 0.0 22 0.0 0.0 0.0 7.504241034095525 0.0 23 0.0 0.0 0.0 7.701359520225552 0.0 24 0.0 0.0 0.0 7.845689078441211 0.0 25 0.0 0.0 0.0 7.9788933887654405 0.0 26 0.0 0.0 0.0 8.104556423673333 0.0 27 0.0 0.0 0.0 8.24029938116742 0.0 28 0.0 0.0 0.0 8.384703605476309 0.0 29 7.466609323107066E-5 0.0 0.0 8.530003822903973 0.0 30 7.466609323107066E-5 0.0 0.0 8.729660956203857 0.0 31 7.466609323107066E-5 0.0 0.0 8.893329032566363 0.0 32 1.493321864621413E-4 0.0 0.0 9.041914558096193 0.0 33 1.493321864621413E-4 0.0 0.0 9.197966692949132 0.0 34 1.493321864621413E-4 0.0 0.0 9.355661481853152 0.0 35 1.493321864621413E-4 0.0 0.0 9.533441449836332 0.0 36 1.493321864621413E-4 0.0 0.0 9.689717582968964 0.0 37 1.493321864621413E-4 0.0 0.0 9.85696963180656 0.0 38 1.493321864621413E-4 0.0 0.0 10.027506988746326 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position ACTACGC 20 7.8569475E-4 44.000004 33 CTATGCG 50 2.7284841E-11 44.0 1 CGACGGT 35 1.446333E-7 44.0 28 CTTACGT 25 4.4432345E-5 44.0 19 CGTTTTT 4885 0.0 41.748207 1 CGTTAGG 245 0.0 41.30612 2 GCGTAAG 105 0.0 39.809525 1 GTATGCG 45 2.3514076E-8 39.111107 1 GGTTACG 40 4.1252133E-7 38.500004 1 ACGGGAT 540 0.0 38.296295 5 TAGGGAC 965 0.0 38.07254 5 GCGCGAC 330 0.0 38.0 9 ACGGGTC 145 0.0 37.931034 5 TGATCGC 35 7.29111E-6 37.714287 43 GGCGATT 700 0.0 37.714287 8 TCGTTGA 100 0.0 37.4 24 AACGGGA 330 0.0 37.333332 4 TACGGGA 395 0.0 37.316456 4 ATCGTTG 95 0.0 37.052635 23 GGCGCGA 340 0.0 36.882355 8 >>END_MODULE