##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546526_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1300318 Sequences flagged as poor quality 0 Sequence length 50 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.422518953056098 31.0 31.0 33.0 30.0 34.0 2 31.817726894498115 31.0 31.0 34.0 30.0 34.0 3 31.9474859226743 33.0 31.0 34.0 30.0 34.0 4 35.63099564875669 37.0 35.0 37.0 33.0 37.0 5 35.521673928992755 37.0 35.0 37.0 33.0 37.0 6 35.55777279096344 37.0 35.0 37.0 33.0 37.0 7 36.0282546269451 37.0 35.0 37.0 35.0 37.0 8 36.02099640241848 37.0 35.0 37.0 35.0 37.0 9 37.7057012207783 39.0 37.0 39.0 35.0 39.0 10 37.06059517748735 39.0 37.0 39.0 33.0 39.0 11 36.859369784929534 39.0 37.0 39.0 32.0 39.0 12 36.5566053842214 39.0 35.0 39.0 32.0 39.0 13 36.46025126161447 39.0 35.0 39.0 32.0 39.0 14 37.55960388151206 40.0 36.0 41.0 32.0 41.0 15 37.685311593010326 40.0 36.0 41.0 33.0 41.0 16 37.72252325969494 40.0 36.0 41.0 33.0 41.0 17 37.661449737679554 40.0 36.0 41.0 33.0 41.0 18 37.58599358003196 39.0 36.0 41.0 32.0 41.0 19 37.56956452190926 39.0 36.0 41.0 33.0 41.0 20 37.40738957701116 39.0 35.0 41.0 32.0 41.0 21 37.307633209722546 39.0 35.0 41.0 32.0 41.0 22 37.2349409913575 39.0 35.0 41.0 32.0 41.0 23 37.13016123748191 39.0 35.0 41.0 32.0 41.0 24 37.08728710976853 39.0 35.0 41.0 32.0 41.0 25 36.93382849426064 39.0 35.0 41.0 31.0 41.0 26 36.847029726574576 39.0 35.0 41.0 31.0 41.0 27 36.729033974766175 39.0 35.0 41.0 31.0 41.0 28 36.78868399883721 39.0 35.0 41.0 31.0 41.0 29 36.72904551040592 39.0 35.0 41.0 31.0 41.0 30 36.711332920101086 39.0 35.0 41.0 31.0 41.0 31 36.603966875794995 39.0 35.0 41.0 31.0 41.0 32 36.41476085080726 39.0 35.0 41.0 30.0 41.0 33 36.33927931475224 39.0 35.0 41.0 30.0 41.0 34 36.2345810793975 39.0 35.0 41.0 30.0 41.0 35 36.053058559521595 39.0 35.0 41.0 29.0 41.0 36 35.923596381808146 39.0 35.0 41.0 29.0 41.0 37 35.862523628835405 38.0 35.0 41.0 28.0 41.0 38 35.83237715697237 38.0 35.0 41.0 28.0 41.0 39 35.725461002616285 38.0 35.0 41.0 27.0 41.0 40 35.655423519477544 38.0 35.0 40.0 27.0 41.0 41 35.66213956893621 38.0 35.0 40.0 27.0 41.0 42 35.495069667573624 38.0 35.0 40.0 27.0 41.0 43 35.55036537216281 38.0 35.0 40.0 27.0 41.0 44 35.22374142325185 38.0 34.0 40.0 26.0 41.0 45 35.167102201153874 38.0 34.0 40.0 26.0 41.0 46 35.192424468476176 38.0 34.0 40.0 26.0 41.0 47 35.115358704563036 38.0 34.0 40.0 26.0 41.0 48 35.09809062090965 38.0 34.0 40.0 26.0 41.0 49 35.09767149266564 38.0 34.0 40.0 26.0 41.0 50 34.55751823784644 37.0 34.0 40.0 24.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 2.0 11 1.0 12 3.0 13 5.0 14 6.0 15 38.0 16 72.0 17 196.0 18 432.0 19 952.0 20 1609.0 21 2624.0 22 3964.0 23 5702.0 24 8583.0 25 12230.0 26 17196.0 27 20841.0 28 23153.0 29 25538.0 30 29551.0 31 35896.0 32 44539.0 33 56388.0 34 87539.0 35 129176.0 36 96516.0 37 124974.0 38 193263.0 39 379329.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 34.52047883671533 23.911996911524717 27.107599833271557 14.459924418488402 2 33.4556623841245 25.01341979423495 28.241091794468737 13.289826027171813 3 29.37412233007618 25.2518230156008 31.160839117815797 14.213215536507223 4 25.353874975198377 28.280312969596665 31.18467943995238 15.181132615252576 5 22.55978922079061 33.01923068049508 29.831625802303748 14.58935429641057 6 20.39378059828442 40.98905037075546 27.900790422035225 10.716378608924893 7 86.30965656093356 3.9129659052631744 7.867690826397851 1.9096867074054193 8 85.9968100110896 3.4939914697789307 7.611830336886823 2.8973681822446506 9 79.51478023068204 5.956850555018081 10.470900195183026 4.057469019116862 10 37.41077182658396 31.850901087272497 17.27062149412682 13.46770559201672 11 29.855619932970246 26.36678104894341 28.022991299051466 15.754607719034883 12 27.883948388009706 24.062114036720246 30.236603661565866 17.817333913704186 13 22.789271547421478 29.21600716132515 30.94719906976601 17.04752222148736 14 19.07956361443893 31.863974812315142 31.24458786235367 17.81187371089226 15 18.237769530222607 25.81899196965665 39.497030726330024 16.446207773790718 16 19.733865100690753 24.19592745774495 37.5221292022413 18.548078239322997 17 20.31180065184055 23.984363824848998 31.047174614209755 24.656660909100697 18 22.620620494371376 24.484318451332673 32.94424902216227 19.950812032133676 19 25.78592313572526 26.262652674192005 28.81625879208009 19.135165398002645 20 26.378239784421964 25.711095285922365 27.918786020035096 19.99187890962057 21 23.56600462348441 27.325315807364042 29.58491692032257 19.523762648828978 22 22.529104419072873 25.42139691983038 29.13287365090693 22.916625010189815 23 20.351560156823176 28.789419203610194 28.81295190868695 22.04606873087968 24 20.02410179663744 25.988335161091364 33.66553412319141 20.32202891907979 25 19.750937847511146 27.726140836318503 31.416391990266995 21.106529325903356 26 19.231910963318207 29.583609547818302 30.04326633946465 21.141213149398837 27 20.418313058805616 28.197179459178447 30.25406092971104 21.1304465523049 28 19.26021173282228 27.2567941072876 33.46358352341504 20.019410636475076 29 19.768625828451196 25.828451194246334 32.484515326250964 21.91840765105151 30 20.856052134939297 27.17512177790356 30.71894721137445 21.249878875782695 31 23.50940308447626 26.871426835589446 27.578715360396455 22.040454719537834 32 23.90069198457608 27.24818082961245 27.788048769608665 21.063078416202803 33 22.839643840968133 27.90748109308646 27.96339049371 21.289484572235406 34 20.69985957281219 27.867644683838876 28.84463646584912 22.58785927749981 35 20.51736575206988 27.79735418566843 30.144549256412663 21.54073080584903 36 24.11540869233526 27.302321432141984 27.618628673908997 20.963641201613758 37 21.299866648004564 29.68466175197144 28.852711413669578 20.162760186354415 38 21.363081953798993 30.178540941523536 27.29986049566337 21.158516609014104 39 21.155132821356005 29.382197277896637 27.319855604552117 22.142814296195237 40 22.443509972176038 27.178044139971913 28.4242008493307 21.954245038521346 41 19.307277142975796 26.76268420494064 28.989601005292553 24.94043764679102 42 22.056220093853966 27.94831725777848 27.15812593534812 22.83733671301943 43 21.602715643404153 27.471203197986956 28.477034079355974 22.44904707925292 44 21.314709171141214 28.75235134790105 28.70705473584154 21.225884745116193 45 19.79977205575867 29.669742324569835 28.3955924627668 22.134893156904695 46 21.83865792829139 29.13233532105223 28.066211495957145 20.962795254699234 47 21.09476297336498 27.27309781145843 29.387272959383782 22.244866255792815 48 22.03314881436695 25.921120833519183 29.731035023740347 22.31469532837352 49 21.354391771858882 25.27881641260061 29.94129128413204 23.42550053140847 50 20.01625756161185 28.228787112075658 29.640826320946108 22.11412900536638 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 1049.0 1 1267.5 2 1486.0 3 8008.5 4 14531.0 5 10240.0 6 5949.0 7 6019.0 8 6089.0 9 6345.0 10 6601.0 11 6482.5 12 6364.0 13 6209.0 14 6054.0 15 5796.0 16 5538.0 17 5457.0 18 5376.0 19 5454.0 20 5532.0 21 6100.5 22 6669.0 23 7154.5 24 7640.0 25 9194.5 26 10749.0 27 13864.0 28 16979.0 29 19623.5 30 22268.0 31 24912.0 32 27556.0 33 32706.5 34 37857.0 35 41519.5 36 45182.0 37 49990.5 38 54799.0 39 60812.0 40 66825.0 41 77870.5 42 88916.0 43 96468.5 44 104021.0 45 109197.5 46 114374.0 47 116400.0 48 118426.0 49 115550.5 50 112675.0 51 101920.5 52 91166.0 53 80802.0 54 70438.0 55 62310.0 56 54182.0 57 50993.0 58 47804.0 59 44226.5 60 40649.0 61 36160.5 62 31672.0 63 26925.0 64 22178.0 65 18494.5 66 14811.0 67 12479.0 68 10147.0 69 8704.0 70 7261.0 71 5919.5 72 4578.0 73 3547.5 74 2517.0 75 2116.0 76 1715.0 77 1229.0 78 743.0 79 603.0 80 463.0 81 358.5 82 254.0 83 193.0 84 132.0 85 107.0 86 82.0 87 46.5 88 11.0 89 7.5 90 4.0 91 4.5 92 5.0 93 3.0 94 1.0 95 0.5 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 1300318.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 27.131644687845146 #Duplication Level Percentage of deduplicated Percentage of total 1 77.15826198513565 20.934305489123695 2 6.046322021501361 3.28093321511337 3 2.477154051373892 2.0162779067679755 4 1.522631762162032 1.6524601584563112 5 1.0878504144310985 1.4757585458934828 6 0.9023401912195818 1.468918407343916 7 0.7379276479566428 1.4014833524787835 8 0.6515969936638081 1.4143118489403619 9 0.5849179273151356 1.4282806837918582 >10 8.219502843356148 53.298170144739075 >50 0.5850686871227374 9.515205199445084 >100 0.025004750312944853 1.141441651482356 >500 8.524346693536825E-4 0.15842648879425836 >1k 2.841448897845608E-4 0.14524355469021058 >5k 2.841448897845608E-4 0.6687833529392658 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 8675 0.6671444984995978 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATA 1884 0.14488763517847172 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.04521970779455487 0.0 2 0.0 0.0 0.0 0.18449333163118561 0.0 3 0.0 0.0 0.0 0.3130772626388314 0.0 4 0.0 0.0 0.0 0.48495829481711394 0.0 5 0.0 0.0 0.0 0.8352572216950007 0.0 6 0.0 0.0 0.0 1.475946653049485 0.0 7 0.0 0.0 0.0 1.8496244764742162 0.0 8 0.0 0.0 0.0 2.9415112303298114 0.0 9 0.0 0.0 0.0 3.561744127205807 0.0 10 0.0 0.0 0.0 4.3960784977213265 0.0 11 0.0 0.0 0.0 4.832279488555876 0.0 12 0.0 0.0 0.0 5.269018809245123 0.0 13 0.0 0.0 0.0 5.489964762465797 0.0 14 0.0 0.0 0.0 5.601783563712877 0.0 15 0.0 0.0 0.0 5.704450757430106 0.0 16 0.0 0.0 0.0 5.90986204912952 0.0 17 0.0 0.0 0.0 6.118887841281902 0.0 18 0.0 0.0 0.0 6.4523447341342655 0.0 19 0.0 0.0 0.0 6.593079539005074 0.0 20 0.0 0.0 0.0 6.768267454576496 0.0 21 0.0 0.0 0.0 6.937841358806077 0.0 22 0.0 0.0 0.0 7.118797094249253 0.0 23 0.0 0.0 0.0 7.327284556546937 0.0 24 0.0 0.0 0.0 7.478170724392033 0.0 25 0.0 0.0 0.0 7.606908463929592 0.0 26 0.0 0.0 0.0 7.742644491578214 0.0 27 0.0 0.0 0.0 7.896760638551493 0.0 28 0.0 0.0 0.0 8.031343102225764 0.0 29 0.0 0.0 0.0 8.183921163899907 0.0 30 0.0 0.0 0.0 8.39617693518047 0.0 31 0.0 0.0 0.0 8.554599720991327 0.0 32 0.0 0.0 0.0 8.731710243186667 0.0 33 0.0 0.0 0.0 8.898823210937632 0.0 34 0.0 0.0 0.0 9.066935934133035 0.0 35 0.0 0.0 0.0 9.249275946345433 0.0 36 7.690426495672597E-5 0.0 0.0 9.415542967181874 0.0 37 7.690426495672597E-5 0.0 0.0 9.589961840103728 0.0 38 7.690426495672597E-5 0.0 0.0 9.772071139521255 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CTATGCG 30 2.527975E-6 44.0 1 TCTAGCG 45 4.802132E-10 44.0 1 CCGAACC 20 7.856863E-4 44.0 25 TCGACGG 25 4.4431632E-5 44.0 2 CGTTTCG 20 7.856863E-4 44.0 42 CGTTTTT 5665 0.0 41.941746 1 AATGCGG 115 0.0 40.173916 2 TACGGGA 535 0.0 39.88785 4 CGTATGG 200 0.0 39.600002 2 CGACAAT 50 1.3478711E-9 39.600002 20 ACGGGAT 555 0.0 38.45045 5 AAGGGCG 670 0.0 38.089554 5 TTACGGG 400 0.0 37.95 3 TAACGGG 250 0.0 37.84 3 CGGGTAT 70 0.0 37.714287 6 CGAAAGG 170 0.0 37.52941 2 GCGATCG 65 1.0913936E-11 37.230766 9 GCGATAC 65 1.0913936E-11 37.230766 9 TAAGGGA 1675 0.0 37.17015 4 TCCGCTA 30 1.3011895E-4 36.666664 41 >>END_MODULE