##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546525_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 2083929 Sequences flagged as poor quality 0 Sequence length 50 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.433918334069922 31.0 31.0 33.0 30.0 34.0 2 31.830280686146217 31.0 31.0 34.0 30.0 34.0 3 31.96073618630961 33.0 31.0 34.0 30.0 34.0 4 35.64122434113638 37.0 35.0 37.0 33.0 37.0 5 35.534111766763644 37.0 35.0 37.0 33.0 37.0 6 35.56546024360715 37.0 35.0 37.0 33.0 37.0 7 36.02668948894132 37.0 35.0 37.0 35.0 37.0 8 36.01852366371407 37.0 35.0 37.0 35.0 37.0 9 37.70389634195791 39.0 37.0 39.0 35.0 39.0 10 37.108262325635856 39.0 37.0 39.0 33.0 39.0 11 36.86772246079401 39.0 37.0 39.0 32.0 39.0 12 36.58918753949871 39.0 35.0 39.0 32.0 39.0 13 36.50475376080471 39.0 35.0 39.0 32.0 39.0 14 37.61489522915608 40.0 36.0 41.0 32.0 41.0 15 37.734960740025215 40.0 36.0 41.0 33.0 41.0 16 37.76888032173841 40.0 36.0 41.0 33.0 41.0 17 37.69700263300717 40.0 36.0 41.0 33.0 41.0 18 37.621493342623474 39.0 36.0 41.0 33.0 41.0 19 37.590986545127016 39.0 36.0 41.0 33.0 41.0 20 37.44180152010937 39.0 35.0 41.0 32.0 41.0 21 37.34019057271145 39.0 35.0 41.0 32.0 41.0 22 37.266221641908146 39.0 35.0 41.0 32.0 41.0 23 37.1662345502174 39.0 35.0 41.0 32.0 41.0 24 37.112140096903495 39.0 35.0 41.0 32.0 41.0 25 36.95585070316695 39.0 35.0 41.0 31.0 41.0 26 36.84609888340726 39.0 35.0 41.0 31.0 41.0 27 36.75619898758547 39.0 35.0 41.0 31.0 41.0 28 36.79864813052652 39.0 35.0 41.0 31.0 41.0 29 36.72921918165158 39.0 35.0 41.0 31.0 41.0 30 36.696403284372934 39.0 35.0 41.0 31.0 41.0 31 36.58537694902274 39.0 35.0 41.0 31.0 41.0 32 36.39633547975963 39.0 35.0 41.0 30.0 41.0 33 36.30513419603067 39.0 35.0 41.0 30.0 41.0 34 36.18913216333186 39.0 35.0 41.0 30.0 41.0 35 36.008642328985296 39.0 35.0 41.0 29.0 41.0 36 35.8918283684329 39.0 35.0 41.0 29.0 41.0 37 35.850314957947226 38.0 35.0 41.0 28.0 41.0 38 35.81473601067982 38.0 35.0 41.0 28.0 41.0 39 35.70591272543354 38.0 35.0 41.0 28.0 41.0 40 35.607363782547296 38.0 35.0 40.0 27.0 41.0 41 35.6038823779505 38.0 35.0 40.0 27.0 41.0 42 35.41664999143445 38.0 35.0 40.0 27.0 41.0 43 35.45449389110666 38.0 35.0 40.0 27.0 41.0 44 35.20647488470097 38.0 34.0 40.0 26.0 41.0 45 35.12669817445796 38.0 34.0 40.0 26.0 41.0 46 35.120726761804264 38.0 34.0 40.0 26.0 41.0 47 35.039096341574016 38.0 34.0 40.0 26.0 41.0 48 34.98600336191876 38.0 34.0 40.0 26.0 41.0 49 34.97472898548847 37.0 34.0 40.0 26.0 41.0 50 34.4415932596552 37.0 33.0 40.0 24.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 2.0 10 3.0 11 1.0 12 3.0 13 10.0 14 17.0 15 52.0 16 99.0 17 297.0 18 746.0 19 1478.0 20 2521.0 21 4222.0 22 6287.0 23 9264.0 24 13284.0 25 19517.0 26 27776.0 27 34293.0 28 37531.0 29 40926.0 30 47751.0 31 56608.0 32 70711.0 33 90606.0 34 139287.0 35 205525.0 36 159714.0 37 205867.0 38 311936.0 39 597595.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 33.70633068593028 23.7305109723028 27.418880393717828 15.144277948049092 2 33.340483289018 25.397026482188213 27.603147708007324 13.659342520786458 3 29.708593718883897 25.223700039684655 31.404572804543722 13.663133436887726 4 25.419340102277953 28.386043862338877 30.68223533527294 15.512380700110223 5 23.015467417555975 32.280802273014096 29.79468110477852 14.909049204651406 6 20.488030062444544 40.66961974232328 27.856131374917283 10.986218820314896 7 85.63962591815748 3.9118415262708086 8.250329065913474 2.198203489658237 8 84.9675780700782 3.5119238707268816 8.213715534454389 3.3067825247405267 9 78.12497450728888 6.277277200902717 11.359456104310656 4.23829218749775 10 38.4329312562952 31.851373055415994 16.512174838970044 13.203520849318762 11 29.18962210324824 25.77856539258295 29.314818307149622 15.716994197019188 12 27.675990880687394 22.79895332326581 30.86160804902662 18.66344774702017 13 22.293417865963765 28.19496249632305 31.68303718600778 17.828582451705408 14 18.978669618782597 31.18230035668202 30.95599706132023 18.883032963215157 15 18.087804334984543 24.85175838524249 39.50278536360884 17.55765191616413 16 20.510919517891445 23.70099941024862 36.90624776563885 18.881833306221086 17 20.59086465997642 23.58276121691286 31.021882223434677 24.804491899676044 18 22.29946413721389 24.045588885225936 33.08836337514378 20.566583602416397 19 25.405711998825296 26.48482745813317 28.393961598499757 19.715498944541775 20 26.766698865460388 25.17264263801694 27.762846047058225 20.297812449464452 21 24.0977499713282 27.35385898463911 29.117834628722957 19.430556415309734 22 23.095604504759997 24.94518767194084 28.6128270204983 23.346380802800862 23 20.57694863884518 28.806643604460614 28.21458888474607 22.40181887194813 24 20.432893826996985 25.20220218635088 33.21571896163449 21.149185025017648 25 20.843560409207797 26.677012508583548 31.083496606650225 21.395930475558426 26 19.85182796534815 28.706448252315695 29.94986873353171 21.491855048804446 27 20.7080471551574 28.17927098284059 29.36395625762682 21.748725604375196 28 19.833689151597774 27.679062002592218 32.57150315581769 19.915745689992317 29 20.734583567866274 25.397266413587026 31.903198237559916 21.96495178098678 30 21.517239790799014 26.901780242992924 30.655890867683112 20.92508909852495 31 23.958205869777714 26.43213852295352 27.4552539937781 22.15440161349067 32 24.197129556717144 27.399541922973388 27.30481700672144 21.098511513588033 33 23.11067219660555 26.550856579086908 27.947401279026302 22.391069945281245 34 20.289606795624994 27.64820682470468 29.065337638662353 22.996848741007973 35 20.152414021782892 26.83445549248559 29.33924332354893 23.673887162182588 36 22.98341258267436 26.722503501798766 27.172758764813963 23.121325150712906 37 20.675176553519815 28.81537710737746 28.518438008204694 21.99100833089803 38 20.908677790846042 28.62923832817721 26.77768772352609 23.684396157450664 39 20.74638819268795 27.819661802297485 28.577269187194 22.856680817820568 40 22.471159046205507 25.580861919959847 29.1312228007768 22.816756233057845 41 19.604938555968076 25.94685327571141 29.54097764367212 24.907230524648394 42 21.968022902891605 26.753886528763697 27.91395484203157 23.364135726313133 43 21.889517349199515 25.655480584991142 29.24106339515406 23.21393867065529 44 21.644547391009965 27.77124364601673 28.78322629993632 21.800982663036987 45 19.823564046567803 28.56863165683668 28.572422572937946 23.035381723657572 46 22.124554147478154 28.012710605783592 27.863569248280534 21.99916599845772 47 21.522902171811037 26.700093909149498 28.940765256397892 22.836238662641577 48 21.831933813484046 24.805019748753438 29.643428350965888 23.719618086796622 49 21.801462525834616 24.817976044289416 29.89761167486992 23.48294975500605 50 20.331882708096103 27.272810158119594 29.299318738786205 23.095988394998102 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 1664.0 1 2065.0 2 2466.0 3 14016.0 4 25566.0 5 17910.5 6 10255.0 7 10383.0 8 10511.0 9 10835.5 10 11160.0 11 11116.0 12 11072.0 13 10727.0 14 10382.0 15 10177.0 16 9972.0 17 9788.0 18 9604.0 19 9251.0 20 8898.0 21 9947.0 22 10996.0 23 11458.0 24 11920.0 25 14427.5 26 16935.0 27 20283.5 28 23632.0 29 27610.0 30 31588.0 31 36707.5 32 41827.0 33 47690.0 34 53553.0 35 59329.0 36 65105.0 37 72411.5 38 79718.0 39 89002.5 40 98287.0 41 114494.5 42 130702.0 43 144365.0 44 158028.0 45 165376.0 46 172724.0 47 182211.0 48 191698.0 49 186138.0 50 180578.0 51 163478.5 52 146379.0 53 131486.5 54 116594.0 55 104094.0 56 91594.0 57 88200.5 58 84807.0 59 78630.0 60 72453.0 61 65633.5 62 58814.0 63 51089.0 64 43364.0 65 36374.5 66 29385.0 67 25389.0 68 21393.0 69 18383.0 70 15373.0 71 12779.5 72 10186.0 73 8321.0 74 6456.0 75 5069.0 76 3682.0 77 3053.0 78 2424.0 79 1877.5 80 1331.0 81 894.5 82 458.0 83 360.0 84 262.0 85 164.0 86 66.0 87 50.0 88 34.0 89 29.5 90 25.0 91 14.0 92 3.0 93 2.0 94 1.0 95 2.0 96 3.0 97 2.0 98 1.0 99 0.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 2083929.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 25.093936025156427 #Duplication Level Percentage of deduplicated Percentage of total 1 77.76798524926075 19.515048466502577 2 6.693022104033207 3.359085369871343 3 2.44922000512498 1.8438171036041864 4 1.3704611305267127 1.375610557376035 5 0.9433621759655848 1.1836335046116373 6 0.7446511789343664 1.121173742714178 7 0.6068383025176366 1.0659573078694466 8 0.5461090719279721 1.0963220890974466 9 0.4591687983746595 1.037011720604549 >10 7.091337546765916 44.93472072533602 >50 1.2732398532926297 20.022337253710603 >100 0.050566946617724734 1.9151059607850285 >500 0.0028840261841462968 0.45724357016108913 >1k 9.613420613820989E-4 0.34506763889333225 >5k 0.0 0.0 >10k+ 1.922684122764198E-4 0.7278649888625294 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 15086 0.7239210165029615 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATA 2171 0.10417821336523461 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.06924420169785055 0.0 2 4.798627976289019E-5 0.0 0.0 0.2432424521180904 0.0 3 4.798627976289019E-5 0.0 0.0 0.411674294085835 0.0 4 4.798627976289019E-5 0.0 0.0 0.6371138364118931 0.0 5 4.798627976289019E-5 0.0 0.0 1.07023799755174 0.0 6 4.798627976289019E-5 0.0 0.0 1.87515985429446 0.0 7 4.798627976289019E-5 0.0 0.0 2.349936106268496 0.0 8 4.798627976289019E-5 0.0 0.0 3.6791560557005543 0.0 9 4.798627976289019E-5 0.0 0.0 4.412914259554908 0.0 10 4.798627976289019E-5 0.0 0.0 5.423985174159005 0.0 11 4.798627976289019E-5 0.0 0.0 5.960951644705745 0.0 12 9.597255952578039E-5 0.0 0.0 6.475940399121083 0.0 13 9.597255952578039E-5 0.0 0.0 6.749750111448135 0.0 14 9.597255952578039E-5 0.0 0.0 6.879888902165093 0.0 15 9.597255952578039E-5 0.0 0.0 6.998750917137772 0.0 16 9.597255952578039E-5 0.0 0.0 7.218624051011335 0.0 17 9.597255952578039E-5 0.0 0.0 7.448526317355341 0.0 18 9.597255952578039E-5 0.0 0.0 7.815477398702163 0.0 19 9.597255952578039E-5 0.0 0.0 7.965770426919535 0.0 20 9.597255952578039E-5 0.0 0.0 8.151765247280498 0.0 21 9.597255952578039E-5 0.0 0.0 8.334832904575924 0.0 22 9.597255952578039E-5 0.0 0.0 8.5316726241633 0.0 23 9.597255952578039E-5 0.0 0.0 8.741612598125943 0.0 24 9.597255952578039E-5 0.0 0.0 8.910956179409183 0.0 25 9.597255952578039E-5 0.0 0.0 9.056882456168132 0.0 26 9.597255952578039E-5 0.0 0.0 9.201992966171112 0.0 27 9.597255952578039E-5 0.0 0.0 9.356412814448094 0.0 28 9.597255952578039E-5 0.0 0.0 9.513040031594167 0.0 29 9.597255952578039E-5 0.0 0.0 9.670435029216446 0.0 30 9.597255952578039E-5 0.0 0.0 9.895778598982979 0.0 31 9.597255952578039E-5 0.0 0.0 10.075967079492631 0.0 32 9.597255952578039E-5 0.0 0.0 10.256299518841573 0.0 33 9.597255952578039E-5 0.0 0.0 10.437783628904823 0.0 34 9.597255952578039E-5 0.0 0.0 10.614181193313208 0.0 35 9.597255952578039E-5 0.0 0.0 10.806942079120738 0.0 36 9.597255952578039E-5 0.0 0.0 10.981516164898132 0.0 37 9.597255952578039E-5 0.0 0.0 11.162712357282805 0.0 38 9.597255952578039E-5 0.0 0.0 11.353985668417685 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGTTTTT 9675 0.0 41.771576 1 CGACGGT 100 0.0 39.6 28 GCGTAAG 100 0.0 39.6 1 TACGGGA 755 0.0 39.33775 4 GTACGAG 185 0.0 39.24324 1 TTACGGG 550 0.0 38.4 3 ACGGGAC 500 0.0 37.84 5 CGTAAGG 250 0.0 37.84 2 TACGGGT 105 0.0 37.714287 4 GGGCGAT 4365 0.0 36.23826 7 TAGGGAT 2920 0.0 36.164383 5 CTATACG 55 3.426976E-9 36.0 1 AGGGCGA 2285 0.0 35.71991 6 CGGGATC 555 0.0 35.675674 6 TAGGGCG 975 0.0 35.65128 5 GTCGACA 25 0.002353183 35.2 33 CTACGGG 370 0.0 35.08108 3 TAAGGGA 2565 0.0 35.07992 4 AAGGGAT 2870 0.0 35.03136 5 AAGGGAC 2070 0.0 34.8599 5 >>END_MODULE