##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546524_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 2124749 Sequences flagged as poor quality 0 Sequence length 50 %GC 47 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.383519182736407 31.0 31.0 33.0 30.0 34.0 2 31.774459947975032 31.0 31.0 34.0 30.0 34.0 3 31.914131504474174 31.0 31.0 34.0 30.0 34.0 4 35.601371738497114 37.0 35.0 37.0 33.0 37.0 5 35.49091116174193 37.0 35.0 37.0 33.0 37.0 6 35.52658455186942 37.0 35.0 37.0 33.0 37.0 7 35.98883868165134 37.0 35.0 37.0 35.0 37.0 8 35.9668285524549 37.0 35.0 37.0 35.0 37.0 9 37.64732587237363 39.0 37.0 39.0 35.0 39.0 10 37.035555258527005 39.0 37.0 39.0 33.0 39.0 11 36.80597049345593 39.0 37.0 39.0 32.0 39.0 12 36.41364885922996 39.0 35.0 39.0 32.0 39.0 13 36.295663158330704 39.0 35.0 39.0 32.0 39.0 14 37.3549558088979 39.0 35.0 41.0 32.0 41.0 15 37.49707989037764 39.0 35.0 41.0 32.0 41.0 16 37.546032025429824 39.0 35.0 41.0 32.0 41.0 17 37.46740909161505 39.0 35.0 41.0 32.0 41.0 18 37.39996065417609 39.0 36.0 41.0 32.0 41.0 19 37.383204792660216 39.0 36.0 41.0 32.0 41.0 20 37.22718824670584 39.0 35.0 41.0 32.0 41.0 21 37.12422220224601 39.0 35.0 41.0 32.0 41.0 22 37.057938608277965 39.0 35.0 41.0 32.0 41.0 23 36.962842669887124 39.0 35.0 41.0 31.0 41.0 24 36.878890636023364 39.0 35.0 41.0 31.0 41.0 25 36.69319670229284 38.0 35.0 41.0 31.0 41.0 26 36.58775977774316 38.0 35.0 41.0 31.0 41.0 27 36.512614901807225 38.0 35.0 40.0 31.0 41.0 28 36.547865183134576 38.0 35.0 40.0 31.0 41.0 29 36.474627826627994 38.0 35.0 40.0 30.0 41.0 30 36.42995855039819 38.0 35.0 40.0 30.0 41.0 31 36.33925042440307 38.0 35.0 40.0 30.0 41.0 32 36.16232882095721 38.0 35.0 40.0 30.0 41.0 33 36.090586699887844 38.0 35.0 41.0 30.0 41.0 34 35.9895837108289 38.0 35.0 41.0 29.0 41.0 35 35.82144196796892 38.0 35.0 41.0 29.0 41.0 36 35.70490302619274 38.0 35.0 40.0 28.0 41.0 37 35.67901149735804 38.0 35.0 40.0 28.0 41.0 38 35.61631609192427 38.0 35.0 40.0 28.0 41.0 39 35.512710913147856 38.0 35.0 40.0 27.0 41.0 40 35.38593029106026 38.0 34.0 40.0 27.0 41.0 41 35.37080897555429 38.0 34.0 40.0 27.0 41.0 42 35.170852180657576 38.0 34.0 40.0 26.0 41.0 43 35.18979700661114 38.0 34.0 40.0 27.0 41.0 44 34.84197474619355 37.0 34.0 40.0 25.0 41.0 45 34.774833168529554 37.0 34.0 40.0 25.0 41.0 46 34.80057079683294 37.0 34.0 40.0 25.0 41.0 47 34.71984643833225 37.0 34.0 40.0 25.0 41.0 48 34.685337421031846 37.0 34.0 40.0 25.0 41.0 49 34.66818574805777 36.0 34.0 40.0 26.0 41.0 50 34.11539010019536 36.0 33.0 40.0 24.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 4.0 10 1.0 11 6.0 12 3.0 13 10.0 14 27.0 15 65.0 16 154.0 17 367.0 18 842.0 19 1657.0 20 2889.0 21 4617.0 22 7097.0 23 10315.0 24 14637.0 25 20677.0 26 28754.0 27 35616.0 28 39939.0 29 44512.0 30 51856.0 31 62336.0 32 77038.0 33 98090.0 34 156031.0 35 226283.0 36 167407.0 37 213454.0 38 312459.0 39 547606.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 35.751893517775514 23.07962022808341 26.763631845455627 14.40485440868545 2 33.360222783961774 24.983562764354755 27.757396285396535 13.898818166286937 3 30.334453622522002 25.321437967496397 30.213027515250033 14.131080894731566 4 25.931815946260006 27.989000112483875 30.247572772125086 15.831611169131035 5 23.21605987342505 32.409616382923346 29.111250317096278 15.263073426555323 6 20.662864178310002 40.79851314202289 27.268350285139565 11.270272394527542 7 85.50487610536585 4.269963181533442 7.851986281673741 2.373174431426959 8 84.85096357263846 3.780587730597826 7.821394432942433 3.5470542638212796 9 78.68600008753975 5.729382623547535 11.027184858070296 4.55743243084242 10 41.32229265668557 28.269739155071967 16.38814749412754 14.019820694114928 11 33.012134609782144 25.156524370643307 25.63728703955149 16.194053980023053 12 29.67992925281998 22.214623939109984 29.317439377545302 18.788007430524733 13 23.610600593293608 28.019262510536542 30.198155170328356 18.171981725841498 14 19.92978935394251 30.168739931163636 30.923181985260378 18.978288729633476 15 19.03909591203479 23.135862165366355 39.31509086485039 18.50995105774847 16 21.272394998185668 22.54369810269354 36.172978549466315 20.010928349654478 17 21.707599344675536 22.34640421056793 29.976623121131013 25.969373323625522 18 24.304706108815676 22.572642698031625 32.04519686795946 21.077454325193234 19 26.848865442459317 25.747605952514864 26.883740150013015 20.519788455012804 20 28.038370649897942 24.056535619030768 26.84547680690755 21.05961692416375 21 25.11915525080845 27.3181444019976 27.330004626428817 20.232695720765133 22 24.092681064916373 23.841733776554314 27.609002286858352 24.45658287167096 23 22.63166143389172 27.244771029425124 26.621403281046373 23.502164255636785 24 22.503175669220223 24.343298902599788 31.835007334984038 21.318518093195948 25 22.5312260412877 25.122967465804198 29.697437203170825 22.648369289737282 26 20.587325844135 27.55765504537242 28.57735196016094 23.277667150331638 27 21.514776568902963 26.573350546346887 28.323910259517714 23.58796262523244 28 21.032366646601552 26.440346600939684 31.801544558910255 20.72574219354851 29 21.916753461232364 24.3336036397711 30.975517578782245 22.774125320214296 30 22.602434452257654 25.959678060796826 29.624628603190306 21.81325888375521 31 25.97958629466351 25.006247796798586 26.545582560575394 22.46858334796251 32 26.14930045854828 25.17064368544237 26.633451763008242 22.0466040930011 33 24.950241181428957 26.36631432700992 26.385751917049966 22.297692574511156 34 21.404410591556932 25.922356005344632 29.700919967487927 22.972313435610513 35 21.66142918528259 26.24215848554347 30.520404998425697 21.576007330748244 36 24.96308975789611 25.602271138849815 27.267408997486292 22.16723010576779 37 22.659523548428545 27.33348739074592 28.4903769809987 21.516612079826842 38 22.58370282795756 27.854066527387474 26.489481816440435 23.072748828214532 39 22.981302732699252 26.111507759269447 27.24632415405302 23.66086535397828 40 24.076114402218803 24.634721560052505 27.68246978819616 23.606694249532534 41 21.526072020742216 24.40933023147675 28.011402758631725 26.053194989149308 42 23.87750270737861 25.807942491089538 26.145252921639216 24.16930187989264 43 23.204999743499112 25.02827392788513 27.833358199015507 23.93336812960025 44 22.381043596208304 27.05232476871386 28.11179108685308 22.454840548224755 45 21.066535388415293 27.641429646513544 27.82803992377453 23.46399504129664 46 23.258559010970238 27.096235837738952 27.20919035613148 22.436014795159334 47 22.30931747702905 25.74633521418295 28.425851712366967 23.518495596421037 48 23.159959129290094 24.31995496879867 28.560079331723422 23.96000657018782 49 23.01773056488084 23.867195607575294 29.254278976010813 23.86079485153305 50 21.11670602033464 26.451312602100295 29.4046026142382 23.02737876332687 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 1397.0 1 1846.0 2 2295.0 3 13246.5 4 24198.0 5 16550.5 6 8903.0 7 8993.5 8 9084.0 9 9373.0 10 9662.0 11 9755.5 12 9849.0 13 9415.0 14 8981.0 15 8965.5 16 8950.0 17 8612.0 18 8274.0 19 8105.5 20 7937.0 21 8410.5 22 8884.0 23 10024.0 24 11164.0 25 12392.0 26 13620.0 27 15384.5 28 17149.0 29 20370.5 30 23592.0 31 28412.5 32 33233.0 33 39428.0 34 45623.0 35 49626.5 36 53630.0 37 60407.5 38 67185.0 39 74917.0 40 82649.0 41 100088.5 42 117528.0 43 131396.5 44 145265.0 45 160685.5 46 176106.0 47 182358.0 48 188610.0 49 187361.0 50 186112.0 51 171602.5 52 157093.0 53 142341.5 54 127590.0 55 116676.5 56 105763.0 57 102802.0 58 99841.0 59 95281.5 60 90722.0 61 84856.0 62 78990.0 63 70325.0 64 61660.0 65 52818.0 66 43976.0 67 37077.5 68 30179.0 69 26281.0 70 22383.0 71 18896.5 72 15410.0 73 12777.0 74 10144.0 75 7721.5 76 5299.0 77 4036.0 78 2773.0 79 2184.5 80 1596.0 81 1198.5 82 801.0 83 563.5 84 326.0 85 284.0 86 242.0 87 144.5 88 47.0 89 32.5 90 18.0 91 13.0 92 8.0 93 7.5 94 7.0 95 4.0 96 1.0 97 0.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 2124749.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 24.30744795600501 #Duplication Level Percentage of deduplicated Percentage of total 1 78.37510574448989 19.050988039305768 2 6.592447485210523 3.204911482989018 3 2.377670308089245 1.7338529181125315 4 1.3508206578882131 1.3134001135805675 5 0.945687067687311 1.149361959023815 6 0.6736143811776176 0.9824307907734877 7 0.5718606168142089 0.9730330526910214 8 0.47892905206296393 0.9313234406111447 9 0.4305627651219444 0.9419293804495746 >10 6.48965497601964 39.585421669782114 >50 1.6196148890230553 25.532773481735592 >100 0.09109967644352868 3.2512208614754416 >500 0.0019549199812280544 0.3208965883346283 >1k 7.819679924912218E-4 0.32740670718578246 >5k 0.0 0.0 >10k+ 1.9549199812280544E-4 0.7010495139494701 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 14753 0.6943408374353864 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATA 3121 0.1468879382929466 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.04866457167411303 0.0 2 0.0 0.0 0.0 0.1747971172124331 0.0 3 0.0 0.0 0.0 0.3006943408374354 0.0 4 0.0 0.0 0.0 0.48556323593986866 0.0 5 0.0 0.0 0.0 0.8192967734071177 0.0 6 0.0 0.0 0.0 1.5476651595082525 0.0 7 0.0 0.0 0.0 1.9771747156958304 0.0 8 0.0 0.0 0.0 3.3215217420975374 0.0 9 0.0 0.0 0.0 4.088341728834794 0.0 10 0.0 0.0 0.0 5.1147217859615415 0.0 11 0.0 0.0 0.0 5.618216551696224 0.0 12 0.0 0.0 0.0 6.118510939409784 0.0 13 0.0 0.0 0.0 6.376235498875396 0.0 14 0.0 0.0 0.0 6.496155545902128 0.0 15 0.0 0.0 0.0 6.604874269854934 0.0 16 0.0 0.0 0.0 6.796520436060918 0.0 17 9.412876532710452E-5 0.0 0.0 6.990425692634753 0.0 18 9.412876532710452E-5 0.0 0.0 7.318793890478358 0.0 19 9.412876532710452E-5 0.0 0.0 7.460222360382332 0.0 20 9.412876532710452E-5 0.0 0.0 7.632148550252289 0.0 21 9.412876532710452E-5 0.0 0.0 7.804968963392852 0.0 22 9.412876532710452E-5 0.0 0.0 7.981507462763837 0.0 23 9.412876532710452E-5 0.0 0.0 8.178001260384168 0.0 24 9.412876532710452E-5 0.0 0.0 8.334113817679171 0.0 25 9.412876532710452E-5 0.0 0.0 8.467070698703706 0.0 26 9.412876532710452E-5 0.0 0.0 8.600121708493567 0.0 27 9.412876532710452E-5 0.0 0.0 8.746256616663898 0.0 28 9.412876532710452E-5 0.0 0.0 8.8872615071239 0.0 29 9.412876532710452E-5 0.0 0.0 9.03499660430479 0.0 30 9.412876532710452E-5 0.0 0.0 9.259776095905917 0.0 31 9.412876532710452E-5 0.0 0.0 9.424454370845686 0.0 32 9.412876532710452E-5 0.0 0.0 9.624619190313773 0.0 33 9.412876532710452E-5 0.0 0.0 9.802710814312656 0.0 34 1.8825753065420905E-4 0.0 0.0 9.97355452338135 0.0 35 1.8825753065420905E-4 0.0 0.0 10.160305993790326 0.0 36 2.353219133177613E-4 0.0 0.0 10.323760594780842 0.0 37 2.353219133177613E-4 0.0 0.0 10.502793506432996 0.0 38 2.353219133177613E-4 0.0 0.0 10.706958798427484 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGACCGT 25 4.44412E-5 44.0 42 CGTACGT 25 4.44412E-5 44.0 31 TATCGCG 55 1.8189894E-12 44.0 1 CGTTTTT 8555 0.0 41.634132 1 ACGGGAT 590 0.0 38.77966 5 GCGATAA 195 0.0 38.358974 9 TACGGGA 640 0.0 38.156254 4 GGCGATA 840 0.0 37.714287 8 CGCATCG 95 0.0 37.05263 21 TCGTAAG 125 0.0 36.96 1 AGGGCGA 2420 0.0 36.818184 6 TCATACG 30 1.3014674E-4 36.666664 1 GTACGTA 30 1.3014674E-4 36.666664 15 CTAATCC 920 0.0 36.586952 11 ATGGGAC 1330 0.0 36.556393 5 CGTTAGG 320 0.0 36.4375 2 TATACTA 840 0.0 35.880955 44 GGGCGAT 4620 0.0 35.52381 7 AAGGGCG 1140 0.0 35.508774 5 GTTTTTT 10625 0.0 35.365646 2 >>END_MODULE