##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546522_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 2012692 Sequences flagged as poor quality 0 Sequence length 50 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.357473473338196 31.0 31.0 33.0 30.0 34.0 2 31.75207831103815 31.0 31.0 34.0 30.0 34.0 3 31.8981707086827 31.0 31.0 34.0 30.0 34.0 4 35.588275801762016 37.0 35.0 37.0 33.0 37.0 5 35.478867606171235 37.0 35.0 37.0 33.0 37.0 6 35.512929449712125 37.0 35.0 37.0 33.0 37.0 7 35.968557533889935 37.0 35.0 37.0 35.0 37.0 8 35.95124937148854 37.0 35.0 37.0 35.0 37.0 9 37.63574555868459 39.0 37.0 39.0 35.0 39.0 10 37.0030655460448 39.0 37.0 39.0 33.0 39.0 11 36.80993664206943 39.0 37.0 39.0 32.0 39.0 12 36.45267035393393 39.0 35.0 39.0 32.0 39.0 13 36.33924862820541 39.0 35.0 39.0 32.0 39.0 14 37.41474155012292 40.0 36.0 41.0 32.0 41.0 15 37.561757586356975 40.0 36.0 41.0 32.0 41.0 16 37.59882585114861 40.0 35.0 41.0 32.0 41.0 17 37.52361911310822 39.0 35.0 41.0 32.0 41.0 18 37.45643645426126 39.0 36.0 41.0 32.0 41.0 19 37.431436106468354 39.0 36.0 41.0 32.0 41.0 20 37.27150602277944 39.0 35.0 41.0 32.0 41.0 21 37.16448269283129 39.0 35.0 41.0 32.0 41.0 22 37.08780926242068 39.0 35.0 41.0 32.0 41.0 23 36.984204239893636 39.0 35.0 41.0 31.0 41.0 24 36.90748162162914 39.0 35.0 41.0 31.0 41.0 25 36.71822116846492 38.0 35.0 41.0 31.0 41.0 26 36.6037426491485 38.0 35.0 41.0 31.0 41.0 27 36.52245351002538 38.0 35.0 41.0 30.0 41.0 28 36.53693411609923 38.0 35.0 40.0 31.0 41.0 29 36.4329435402933 38.0 35.0 40.0 30.0 41.0 30 36.36979031068837 38.0 35.0 40.0 30.0 41.0 31 36.27429283765226 38.0 35.0 40.0 30.0 41.0 32 36.088908784851334 38.0 35.0 40.0 30.0 41.0 33 36.022376498739 38.0 35.0 41.0 30.0 41.0 34 35.92386614544103 38.0 35.0 41.0 29.0 41.0 35 35.75715211269285 38.0 35.0 41.0 28.0 41.0 36 35.60733336248169 38.0 35.0 40.0 27.0 41.0 37 35.570753995146795 38.0 35.0 40.0 27.0 41.0 38 35.513566407577514 38.0 35.0 40.0 27.0 41.0 39 35.41303885542348 38.0 34.0 40.0 27.0 41.0 40 35.28818865479666 38.0 34.0 40.0 26.0 41.0 41 35.26681181223953 38.0 34.0 40.0 26.0 41.0 42 35.07682844667738 38.0 34.0 40.0 26.0 41.0 43 35.09457532498763 38.0 34.0 40.0 26.0 41.0 44 34.74869975137776 37.0 34.0 40.0 25.0 41.0 45 34.67528762473344 37.0 34.0 40.0 24.0 41.0 46 34.682832743410316 37.0 34.0 40.0 24.0 41.0 47 34.59843284516459 37.0 34.0 40.0 24.0 41.0 48 34.55174910021007 36.0 34.0 40.0 24.0 41.0 49 34.53522545923569 36.0 34.0 40.0 25.0 41.0 50 34.01269245368889 36.0 33.0 40.0 24.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 1.0 9 1.0 10 3.0 11 4.0 12 4.0 13 14.0 14 17.0 15 45.0 16 146.0 17 382.0 18 803.0 19 1583.0 20 2858.0 21 4560.0 22 7078.0 23 9863.0 24 14110.0 25 20319.0 26 28159.0 27 34406.0 28 38658.0 29 42716.0 30 49899.0 31 59227.0 32 73637.0 33 93389.0 34 144571.0 35 208306.0 36 161616.0 37 207032.0 38 302164.0 39 507121.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 35.44282980207603 23.02324449046352 26.449799571916614 15.084126135543837 2 33.68334548952349 25.00919166966431 27.899400405029684 13.408062435782526 3 30.075789042734808 25.288817166262895 30.798453017153143 13.836940773849154 4 26.10280162091368 27.95708434276084 30.249784865245154 15.690329171080325 5 23.272761058323876 31.479133419320988 29.42218680255101 15.825918719804122 6 20.157729051439567 41.117021382307875 27.640940591009453 11.084308975243108 7 85.55566375779304 4.135853871332524 7.91313325635517 2.3953491145192607 8 85.04450755505562 3.596725181995059 7.9315165956837905 3.427250667265533 9 78.73996617465563 5.494233593614919 11.21085590840526 4.554944323324184 10 40.421634308677135 24.817508093637773 18.138145329737487 16.622712267947605 11 32.73993238905903 25.87872361990806 25.104238502463367 16.27710548856954 12 29.527866161340132 21.76512849457344 28.92300461272763 19.784000731358798 13 23.599388281962668 26.684460414211415 30.407782214069517 19.308369089756404 14 20.14505945271308 29.981586849850846 30.635884675847073 19.237469021588996 15 19.13785119630823 23.290101018933846 38.088887917276956 19.483159867480964 16 20.996307433029994 21.305942488965027 36.7093921971171 20.988357880887886 17 21.390555534577572 21.656964900739904 30.72745357958396 26.225025985098565 18 23.12440254147182 23.097175325385106 32.130251424460376 21.6481707086827 19 27.561097276682172 25.89030015521501 26.26939442299169 20.279208145111124 20 27.59716836952698 25.24678390931151 25.797588503357694 21.358459217803816 21 25.19232947713808 26.991263442195823 27.715815435247915 20.100591645418177 22 23.835887458190324 23.90802964387994 27.36608482569613 24.889998072233606 23 22.412569831847097 27.718001562086997 25.925824716350043 23.943603889715863 24 22.38598851687193 24.76245744505369 31.501541219421554 21.35001281865283 25 22.934805722882587 24.856759007339424 29.388500575348836 22.819934694429154 26 20.78589272476862 27.658727713927416 28.17569702666876 23.379682534635204 27 22.133739290462724 25.77716809129266 28.194229420100047 23.894863198144574 28 21.969779777531784 26.18184998002675 31.25053411053455 20.59783613190692 29 22.167673941169337 24.894718118817984 30.479278498647584 22.458329441365095 30 23.030796564998518 25.381926295727315 29.2568361179952 22.33044102127896 31 25.668209542244913 25.664781297883632 25.49913250512249 23.167876654748962 32 25.92115435446656 25.547525403787564 26.029765110608082 22.5015551311378 33 24.679782102775786 26.50489990520159 25.45789420338532 23.35742378863731 34 21.270566981932657 27.663596814614454 27.990869939364792 23.074966264088097 35 21.50259453508038 26.792325899839618 28.17539891846343 23.529680646616573 36 24.502854882913034 27.09724090919028 25.387441297525903 23.012462910370786 37 21.856697398310324 28.73658761499524 25.93695408934899 23.469760897345445 38 22.780932204231945 28.249131014581465 24.800118448326916 24.16981833285967 39 21.96123400897902 26.34710129518078 25.125751977947942 26.565912717892253 40 23.364628070266093 24.488496004356357 27.531634249055493 24.61524167632206 41 21.044302854087956 24.096434029647853 27.832574482335104 27.026688633929087 42 23.462655985118438 26.37562031349059 25.671389363101753 24.490334338289216 43 23.033877016453587 25.561139011830917 27.461578820803183 23.943405150912312 44 23.12017934189633 27.062262879765008 27.618781214413335 22.19877656392533 45 21.01772153911279 27.74438413825861 27.640046266393465 23.597848056235133 46 23.687032094329386 26.650078601196803 27.13470317365995 22.528186130813854 47 22.59088822333472 26.101609188092368 27.25787154716171 24.049631041411203 48 22.746301967712895 24.979778326738515 27.917336582050307 24.35658312349828 49 23.168423186458735 23.97371281845409 28.043187929400027 24.81467606568715 50 21.48962682814857 25.90510619607968 28.550766833673507 24.054500142098245 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 1610.0 1 1983.0 2 2356.0 3 13294.5 4 24233.0 5 16605.5 6 8978.0 7 9076.0 8 9174.0 9 9458.0 10 9742.0 11 9704.5 12 9667.0 13 9319.0 14 8971.0 15 8650.5 16 8330.0 17 8106.5 18 7883.0 19 7513.5 20 7144.0 21 7721.5 22 8299.0 23 8888.0 24 9477.0 25 10335.0 26 11193.0 27 13325.0 28 15457.0 29 18306.0 30 21155.0 31 24831.5 32 28508.0 33 33552.5 34 38597.0 35 43931.0 36 49265.0 37 54990.5 38 60716.0 39 70420.0 40 80124.0 41 92410.5 42 104697.0 43 119996.0 44 135295.0 45 145640.0 46 155985.0 47 166385.0 48 176785.0 49 176662.0 50 176539.0 51 162171.0 52 147803.0 53 131704.5 54 115606.0 55 107487.0 56 99368.0 57 98740.5 58 98113.0 59 94933.0 60 91753.0 61 84082.0 62 76411.0 63 68748.5 64 61086.0 65 53197.5 66 45309.0 67 39724.5 68 34140.0 69 30992.0 70 27844.0 71 23771.0 72 19698.0 73 16273.0 74 12848.0 75 9450.0 76 6052.0 77 4565.5 78 3079.0 79 2517.0 80 1955.0 81 1428.5 82 902.0 83 611.0 84 320.0 85 221.0 86 122.0 87 89.5 88 57.0 89 40.5 90 24.0 91 19.5 92 15.0 93 11.0 94 7.0 95 3.5 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 2012692.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 27.709493724844382 #Duplication Level Percentage of deduplicated Percentage of total 1 74.89109576163683 20.751943480537957 2 7.624200629720675 4.2252547901239925 3 3.535887895573695 2.9393299036245755 4 2.1879513745889945 2.4250809953775354 5 1.4464164166934341 2.0039733310939307 6 1.0371769845982017 1.7243789487766135 7 0.7357883993301036 1.427182682383556 8 0.6188868427464734 1.3719232868377724 9 0.4979392835742255 1.2417880908198158 >10 6.554091965387858 44.019781036835646 >50 0.8246700661224862 14.172921878954895 >100 0.0421000100123623 2.0722277273344263 >500 0.003071632868989804 0.602602813294755 >1k 5.420528592334949E-4 0.26079744553442824 >5k 0.0 0.0 >10k+ 1.8068428641116493E-4 0.7608135884701808 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 15196 0.7550087146965357 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATA 2350 0.11675904708718472 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.046256456526880416 0.0 2 0.0 0.0 0.0 0.16733807259133537 0.0 3 0.0 0.0 0.0 0.2997478004582917 0.0 4 0.0 0.0 0.0 0.47503542519173325 0.0 5 0.0 0.0 0.0 0.8029047663527256 0.0 6 0.0 0.0 0.0 1.603573721165484 0.0 7 0.0 0.0 0.0 2.077317344134125 0.0 8 0.0 0.0 0.0 3.4613840567757013 0.0 9 0.0 0.0 0.0 4.217833627797994 0.0 10 4.968470088816371E-5 0.0 0.0 5.244717025754562 0.0 11 4.968470088816371E-5 0.0 0.0 5.75125255130939 0.0 12 4.968470088816371E-5 0.0 0.0 6.211978782645333 0.0 13 4.968470088816371E-5 0.0 0.0 6.472425984701087 0.0 14 4.968470088816371E-5 0.0 0.0 6.595246565296628 0.0 15 4.968470088816371E-5 0.0 0.0 6.701273716991969 0.0 16 9.936940177632742E-5 0.0 0.0 6.893205716522945 0.0 17 9.936940177632742E-5 0.0 0.0 7.084293076138823 0.0 18 9.936940177632742E-5 0.0 0.0 7.412559894906921 0.0 19 9.936940177632742E-5 0.0 0.0 7.542634441832133 0.0 20 1.4905410266449114E-4 0.0 0.0 7.701774538776922 0.0 21 1.4905410266449114E-4 0.0 0.0 7.865634682306085 0.0 22 1.4905410266449114E-4 0.0 0.0 8.028501131817487 0.0 23 1.4905410266449114E-4 0.0 0.0 8.211489885188593 0.0 24 1.4905410266449114E-4 0.0 0.0 8.362779799393051 0.0 25 1.4905410266449114E-4 0.0 0.0 8.492953715720041 0.0 26 1.9873880355265484E-4 0.0 0.0 8.620643397002622 0.0 27 1.9873880355265484E-4 0.0 0.0 8.763635966158757 0.0 28 1.9873880355265484E-4 0.0 0.0 8.899821731293214 0.0 29 1.9873880355265484E-4 0.0 0.0 9.04629222951152 0.0 30 1.9873880355265484E-4 0.0 0.0 9.255464820250689 0.0 31 1.9873880355265484E-4 0.0 0.0 9.417933792154985 0.0 32 1.9873880355265484E-4 0.0 0.0 9.59635155304438 0.0 33 1.9873880355265484E-4 0.0 0.0 9.763192778626834 0.0 34 1.9873880355265484E-4 0.0 0.0 9.920742965143202 0.0 35 1.9873880355265484E-4 0.0 0.0 10.100899690563683 0.0 36 1.9873880355265484E-4 0.0 0.0 10.262325283749327 0.0 37 1.9873880355265484E-4 0.0 0.0 10.430657050358425 0.0 38 1.9873880355265484E-4 0.0 0.0 10.620055130144106 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGTTTTT 8040 0.0 41.975124 1 TACGGGT 190 0.0 39.36842 4 TTACGGG 395 0.0 38.430378 3 CGGTCTA 115 0.0 38.260868 31 TAGCATA 1730 0.0 38.150288 30 GTAGCAT 1780 0.0 37.325844 29 GCGATCG 155 0.0 36.903225 9 GGTACCT 1955 0.0 36.79795 8 CATATGC 1790 0.0 36.7486 33 GCGTAAG 120 0.0 36.666664 1 GCGCGAC 1830 0.0 36.546448 9 AGGGTAC 1265 0.0 36.521744 6 GTTGATC 1870 0.0 36.35294 16 TTCGAAT 345 0.0 36.347824 16 TTGATCC 1885 0.0 36.18037 17 ACCCGCT 1710 0.0 36.02339 34 GCCAGTA 1870 0.0 35.882355 25 GGGTACC 2105 0.0 35.84798 7 ATAGGGC 1480 0.0 35.82432 4 TCGTAAG 80 0.0 35.75 1 >>END_MODULE