##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546520_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1463309 Sequences flagged as poor quality 0 Sequence length 50 %GC 49 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.392560969692664 31.0 31.0 33.0 30.0 34.0 2 31.793051911797168 31.0 31.0 34.0 30.0 34.0 3 31.934247653776474 33.0 31.0 34.0 30.0 34.0 4 35.628232997951905 37.0 35.0 37.0 33.0 37.0 5 35.515307429941316 37.0 35.0 37.0 33.0 37.0 6 35.55027612076465 37.0 35.0 37.0 33.0 37.0 7 35.9895346779115 37.0 35.0 37.0 35.0 37.0 8 35.97609322432924 37.0 35.0 37.0 35.0 37.0 9 37.67096354905218 39.0 37.0 39.0 35.0 39.0 10 37.06903736668058 39.0 37.0 39.0 33.0 39.0 11 36.816442733557984 39.0 37.0 39.0 32.0 39.0 12 36.33504816822694 38.0 35.0 39.0 32.0 39.0 13 36.14630539414437 38.0 35.0 39.0 32.0 39.0 14 37.17209010537077 39.0 35.0 41.0 32.0 41.0 15 37.35892009138193 39.0 35.0 41.0 32.0 41.0 16 37.43061718338369 39.0 35.0 41.0 32.0 41.0 17 37.35348924936565 39.0 35.0 41.0 32.0 41.0 18 37.3278227633398 39.0 35.0 41.0 32.0 41.0 19 37.292550650614466 39.0 35.0 41.0 32.0 41.0 20 37.14204245309774 39.0 35.0 41.0 32.0 41.0 21 37.03465091788542 39.0 35.0 41.0 32.0 41.0 22 36.959864936250646 39.0 35.0 41.0 32.0 41.0 23 36.87363024487651 38.0 35.0 41.0 31.0 41.0 24 36.79553600777416 38.0 35.0 41.0 31.0 41.0 25 36.5986309111746 38.0 35.0 41.0 31.0 41.0 26 36.4932136684733 38.0 35.0 40.0 31.0 41.0 27 36.404605589113444 38.0 35.0 40.0 31.0 41.0 28 36.45480892962457 38.0 35.0 40.0 31.0 41.0 29 36.354705670504316 38.0 35.0 40.0 30.0 41.0 30 36.332975468612574 38.0 35.0 40.0 30.0 41.0 31 36.2298140720791 38.0 35.0 40.0 30.0 41.0 32 36.07213035660958 38.0 35.0 40.0 30.0 41.0 33 36.01283324301293 38.0 35.0 40.0 30.0 41.0 34 35.91896311715434 38.0 35.0 40.0 30.0 41.0 35 35.73377119938441 38.0 35.0 40.0 29.0 41.0 36 35.568550456533785 38.0 35.0 40.0 28.0 41.0 37 35.52879467016194 38.0 34.0 40.0 28.0 41.0 38 35.474272351225885 38.0 34.0 40.0 28.0 41.0 39 35.37165219376085 38.0 34.0 40.0 28.0 41.0 40 35.236768857432025 37.0 34.0 40.0 27.0 41.0 41 35.203059640855074 37.0 34.0 40.0 27.0 41.0 42 35.02459835892488 37.0 34.0 40.0 27.0 41.0 43 35.02505485854321 37.0 34.0 40.0 27.0 41.0 44 34.67711125948108 36.0 34.0 40.0 26.0 41.0 45 34.59244014763799 36.0 34.0 40.0 25.0 41.0 46 34.607378892633065 36.0 34.0 40.0 26.0 41.0 47 34.512610801956384 36.0 33.0 40.0 26.0 41.0 48 34.467428957246895 36.0 34.0 40.0 26.0 41.0 49 34.4609723578547 36.0 34.0 40.0 26.0 41.0 50 33.95214954599473 35.0 33.0 39.0 24.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 1.0 10 2.0 11 1.0 12 6.0 13 8.0 14 12.0 15 37.0 16 85.0 17 267.0 18 588.0 19 1094.0 20 1909.0 21 3093.0 22 4757.0 23 6829.0 24 9927.0 25 13718.0 26 19113.0 27 23419.0 28 27110.0 29 30450.0 30 36112.0 31 43889.0 32 55403.0 33 70783.0 34 116363.0 35 176172.0 36 117742.0 37 150500.0 38 211837.0 39 342082.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 33.59187977385501 24.226052050523847 27.936136523454717 14.245931652166425 2 31.974654703825372 25.54914922275473 28.984035497629 13.492160575790896 3 29.699195453591827 26.056970879014617 30.43396849195898 13.80986517543458 4 26.424357398198197 27.997094256920445 29.652178726434403 15.926369618446959 5 23.42458086432872 32.187801756156766 28.801367312030475 15.586250067484036 6 21.110852185013552 40.874893819418865 26.420393778757596 11.593860216809983 7 86.08373214406527 4.466589079955089 7.155973208666112 2.293705567313534 8 86.06405072339471 3.5855038136169464 7.010276025091078 3.3401694378972593 9 79.87861757154504 5.600047563433288 10.060896229026133 4.4604386359955415 10 44.97669323430663 25.186273029141486 15.46850323479183 14.368530501760052 11 36.55810221901184 24.126414858379196 22.593655885393993 16.72182703721497 12 32.66507620741757 20.31259289733064 27.54524164069243 19.477089254559356 13 24.83446763465543 28.526237452240093 28.31623396015469 18.32306095294979 14 20.297626817029077 31.472846814992593 29.2524682073301 18.97705816064823 15 19.046968206988407 22.206314592475 39.191243954626124 19.555473245910466 16 21.78418912205146 20.036574640079436 36.50015136925967 21.679084868609433 17 21.47290831943219 20.181110073128778 29.108821171741578 29.23716043569745 18 24.547378578277044 21.521086797115306 31.688180691842938 22.243353932764716 19 28.21311151643296 24.8550374527868 25.26117176891552 21.67067926186472 20 28.99941160752787 23.652899011760333 24.914696759194403 22.432992621517396 21 25.926649805338446 26.07754069714599 26.718963663860468 21.27684583365509 22 24.940118594227194 22.81568691233362 25.77883413551068 26.465360357928503 23 22.805231157602392 26.988079756223737 24.9675905772465 25.23909850892737 24 22.996236611679418 23.220317786605563 31.78522102987134 21.99822457184368 25 22.95892391832484 24.007642951693732 29.595936333337665 23.43749679664377 26 21.511451101578682 27.18113535828728 26.689919900718166 24.617493639415873 27 22.460942972400225 25.781567666159365 27.028330995025655 24.72915836641475 28 21.144132920661324 26.203351445251823 31.151725302038052 21.5007903320488 29 22.043191151014586 24.662733571651646 30.02079533440989 23.27327994292388 30 23.17118257319541 25.655346888456233 28.998591548333263 22.174878990015095 31 27.675631052634813 25.02014270396751 24.21361448607232 23.090611757325348 32 27.70877511175015 25.713707767805705 24.53992970725937 22.037587413184774 33 26.902110217322523 25.19447362108755 24.218329826441305 23.685086335148625 34 22.46975860874224 26.553106691751367 27.291023290364507 23.686111409141883 35 23.568569591248327 24.718702611683522 28.453047169121493 23.25968062794666 36 28.10014836237596 24.67038745746797 24.936975033981206 22.29248914617487 37 23.84902983580365 27.238744516708362 26.359162692227002 22.553062955260987 38 24.830435676948614 27.287674715319866 24.554349081431194 23.32754052630032 39 23.95932779747818 25.040234154235367 25.38561575169701 25.61482229658944 40 25.710017501429977 22.309095344865643 27.36236844029525 24.61851871340913 41 21.649904428934697 22.913410633024196 27.566631518018408 27.8700534200227 42 24.727791601090406 25.21907539692573 24.472343161970574 25.580789840013285 43 23.419865523959736 23.96787008075533 27.155781861520705 25.45648253376423 44 23.520391113565214 25.60928689702585 27.35990826271143 23.510413726697504 45 21.84603525297801 27.55221214384658 26.33756780010237 24.264184803073036 46 24.372364278494835 25.563021890796815 26.794819139361543 23.269794691346803 47 23.199952983272844 25.536643320036983 27.339748474177362 23.923655222512814 48 24.25113219422555 23.61387786175032 27.784698925517443 24.350291018506688 49 23.5270882636545 22.459917898406967 28.686285671720736 25.3267081662178 50 22.45745772082315 25.273404318568392 27.900805639820437 24.36833232078802 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 1055.0 1 1390.5 2 1726.0 3 7756.0 4 13786.0 5 9455.5 6 5125.0 7 5292.5 8 5460.0 9 5665.5 10 5871.0 11 5874.0 12 5877.0 13 5745.5 14 5614.0 15 5430.0 16 5246.0 17 4983.5 18 4721.0 19 4540.5 20 4360.0 21 4515.5 22 4671.0 23 4930.5 24 5190.0 25 5633.5 26 6077.0 27 7822.0 28 9567.0 29 11403.0 30 13239.0 31 14632.5 32 16026.0 33 18428.5 34 20831.0 35 24372.5 36 27914.0 37 31297.5 38 34681.0 39 42572.5 40 50464.0 41 63522.5 42 76581.0 43 87528.0 44 98475.0 45 107657.0 46 116839.0 47 121252.5 48 125666.0 49 127021.0 50 128376.0 51 117278.5 52 106181.0 53 98979.5 54 91778.0 55 85768.5 56 79759.0 57 78512.5 58 77266.0 59 74490.0 60 71714.0 61 68854.5 62 65995.0 63 59297.5 64 52600.0 65 44976.0 66 37352.0 67 32984.5 68 28617.0 69 25166.5 70 21716.0 71 18336.0 72 14956.0 73 12306.5 74 9657.0 75 7727.0 76 5797.0 77 4512.5 78 3228.0 79 2591.5 80 1955.0 81 1340.0 82 725.0 83 527.0 84 329.0 85 237.5 86 146.0 87 95.0 88 44.0 89 34.5 90 25.0 91 17.5 92 10.0 93 8.5 94 7.0 95 6.5 96 6.0 97 7.0 98 8.0 99 4.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 1463309.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 25.644268041933937 #Duplication Level Percentage of deduplicated Percentage of total 1 77.55711158927491 19.888953581535468 2 6.476438500716994 3.321670497389747 3 2.5318493206260193 1.9478226785976593 4 1.500235029477444 1.5388971688727293 5 1.0560434600297897 1.3540730776467638 6 0.7965543792233298 1.225623240646762 7 0.6534897637037083 1.1730786664154578 8 0.567149822405201 1.1635313652555364 9 0.4889229101675043 1.128426314416008 >10 7.210470314022263 45.676772108476335 >50 1.0960997741534706 17.525407808404033 >100 0.06163299375882078 2.6808166183190796 >500 0.003201713952449569 0.5443601995391352 >1k 5.336189920749282E-4 0.2443326134432192 >5k 2.668094960374641E-4 0.5862340610421456 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 8568 0.5855222649488249 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATA 2187 0.14945578821697947 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.06116274826437888 0.0 2 0.0 0.0 0.0 0.22066426161528427 0.0 3 0.0 0.0 0.0 0.3619194578862018 0.0 4 0.0 0.0 0.0 0.5596220620525125 0.0 5 0.0 0.0 0.0 0.9559840061121745 0.0 6 0.0 0.0 0.0 1.6818730698710935 0.0 7 0.0 0.0 0.0 2.094089491693142 0.0 8 0.0 0.0 0.0 3.2045179794561505 0.0 9 0.0 0.0 0.0 3.842250679794903 0.0 10 0.0 0.0 0.0 4.773222880471589 0.0 11 0.0 0.0 0.0 5.28726331895724 0.0 12 0.0 0.0 0.0 5.776223613741185 0.0 13 0.0 0.0 0.0 6.026751697693379 0.0 14 0.0 0.0 0.0 6.136571291504392 0.0 15 0.0 0.0 0.0 6.249329430762744 0.0 16 0.0 0.0 0.0 6.462886512691441 0.0 17 0.0 0.0 0.0 6.693596499440651 0.0 18 0.0 0.0 0.0 7.078067585178523 0.0 19 0.0 0.0 0.0 7.2199378258453955 0.0 20 0.0 0.0 0.0 7.3976856562762885 0.0 21 0.0 0.0 0.0 7.575775178038268 0.0 22 0.0 0.0 0.0 7.752156243144817 0.0 23 0.0 0.0 0.0 7.963731515353216 0.0 24 0.0 0.0 0.0 8.129315134397451 0.0 25 0.0 0.0 0.0 8.267290093889944 0.0 26 0.0 0.0 0.0 8.399729653818845 0.0 27 0.0 0.0 0.0 8.546656926185788 0.0 28 0.0 0.0 0.0 8.690440638306741 0.0 29 0.0 0.0 0.0 8.840443132653458 0.0 30 0.0 0.0 0.0 9.062337483060652 0.0 31 0.0 0.0 0.0 9.222932408671033 0.0 32 0.0 0.0 0.0 9.405600594269563 0.0 33 0.0 0.0 0.0 9.578974775662557 0.0 34 0.0 0.0 0.0 9.743259967648665 0.0 35 0.0 0.0 0.0 9.944106132060966 0.0 36 0.0 0.0 0.0 10.108391324047075 0.0 37 0.0 0.0 0.0 10.283132270764412 0.0 38 0.0 0.0 0.0 10.474479416172525 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GACGTAA 20 7.8571873E-4 44.000004 38 CGTTGAC 20 7.8571873E-4 44.000004 37 AAATGCG 40 8.314601E-9 44.000004 1 TATACGA 25 4.4434375E-5 44.0 34 CGTTTTT 4815 0.0 41.806854 1 TTAGGCG 45 2.3517714E-8 39.11111 1 ATTGGGC 360 0.0 38.5 4 ACTACGG 75 0.0 38.13333 2 CGTTAGG 220 0.0 38.0 2 TTAGTAG 220 0.0 38.0 1 TAGCCGT 170 0.0 37.52941 44 CGCATCG 135 0.0 37.481483 21 TAAGGGA 1305 0.0 37.425285 4 TAAGGGC 765 0.0 37.38562 4 CCAGTAG 1175 0.0 37.259575 26 TGATCCT 1200 0.0 36.85 18 TATTAGG 430 0.0 36.837208 2 TTCGAAT 215 0.0 36.837208 16 GCGCGAC 890 0.0 36.831463 9 ACGGGAT 480 0.0 36.666664 5 >>END_MODULE